Wall clock time and date at job start Tue Mar 31 2020 20:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 119.99879 * 2 1 4 4 H 1.48497 * 109.47363 * 270.00234 * 3 2 1 5 5 H 1.48509 * 109.47365 * 30.00433 * 3 2 1 6 6 H 1.48507 * 109.47359 * 150.00062 * 3 2 1 7 7 C 1.37880 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99923 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99992 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47186 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99704 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99497 * 180.02562 * 11 10 9 14 14 O 1.45208 * 109.46858 * 180.02562 * 13 11 10 15 15 C 1.34748 * 116.99706 * 180.02562 * 14 13 11 16 16 O 1.21517 * 120.00074 * 359.97438 * 15 14 13 17 17 C 1.47389 * 120.00008 * 179.97438 * 15 14 13 18 18 C 1.36663 * 125.78412 * 179.97438 * 17 15 14 19 19 N 1.34784 * 106.83574 * 179.97438 * 18 17 15 20 20 C 1.46505 * 126.58353 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.46657 * 124.99977 * 20 19 18 22 22 H 1.08999 * 110.46157 * 52.39744 * 21 20 19 23 23 C 1.54509 * 110.50997 * 175.00004 * 21 20 19 24 24 C 1.54479 * 104.06273 * 118.64596 * 23 21 20 25 25 O 1.44427 * 104.80408 * 23.97825 * 24 23 21 26 26 C 1.44421 * 105.27305 * 319.49041 * 25 24 23 27 27 N 1.40203 * 106.83002 * 0.02562 * 19 18 17 28 28 N 1.28762 * 108.38402 * 359.97438 * 27 19 18 29 29 H 0.96998 * 120.00424 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47110 * 59.99678 * 9 7 2 31 31 H 1.08997 * 109.47005 * 300.00382 * 9 7 2 32 32 H 0.97002 * 119.99605 * 0.02562 * 10 9 7 33 33 H 1.08998 * 109.47623 * 60.00347 * 13 11 10 34 34 H 1.09005 * 109.47381 * 299.99737 * 13 11 10 35 35 H 1.08001 * 126.58118 * 0.23970 * 18 17 15 36 36 H 1.08994 * 109.47017 * 245.00215 * 20 19 18 37 37 H 1.08999 * 109.46683 * 5.00242 * 20 19 18 38 38 H 1.09000 * 110.51123 * 237.29247 * 23 21 20 39 39 H 1.09004 * 110.50899 * 0.02562 * 23 21 20 40 40 H 1.09002 * 110.37175 * 142.81242 * 24 23 21 41 41 H 1.09002 * 110.37328 * 265.14743 * 24 23 21 42 42 H 1.09001 * 110.37141 * 281.68005 * 26 25 24 43 43 H 1.09000 * 110.37054 * 159.34560 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 5.3249 -2.8215 -0.0020 12 8 6.1130 -1.8996 -0.0025 13 6 5.8273 -4.2423 -0.0024 14 8 7.2793 -4.2422 -0.0029 15 6 7.8910 -5.4429 -0.0039 16 8 7.2292 -6.4620 -0.0039 17 6 9.3629 -5.5201 -0.0049 18 6 10.1029 -6.6690 -0.0055 19 7 11.3989 -6.2987 -0.0070 20 6 12.5616 -7.1900 -0.0076 21 6 13.4685 -6.8442 -1.1903 22 1 13.7040 -5.7800 -1.1916 23 6 14.7638 -7.6852 -1.1433 24 6 14.7267 -8.5052 -2.4519 25 8 13.8867 -7.7399 -3.3433 26 6 12.8021 -7.2557 -2.5218 27 7 11.4205 -4.8968 -0.0068 28 7 10.2050 -4.4720 -0.0057 29 1 -0.4851 0.8400 0.0004 30 1 3.8752 -0.6804 0.8888 31 1 3.8745 -0.6800 -0.8911 32 1 3.3695 -3.3125 -0.0010 33 1 5.4634 -4.7561 -0.8922 34 1 5.4646 -4.7562 0.8878 35 1 9.7223 -7.6797 -0.0089 36 1 13.1151 -7.0657 0.9232 37 1 12.2270 -8.2235 -0.0962 38 1 15.6397 -7.0367 -1.1236 39 1 14.7579 -8.3475 -0.2776 40 1 15.7299 -8.6035 -2.8667 41 1 14.2919 -9.4884 -2.2714 42 1 12.0721 -8.0472 -2.3521 43 1 12.3267 -6.3940 -2.9904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261812143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:38 Heat of formation + Delta-G solvation = -62.435886 kcal Electronic energy + Delta-G solvation = -27629.910778 eV Core-core repulsion = 23292.179137 eV Total energy + Delta-G solvation = -4337.731641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.70985 -40.44150 -40.10604 -38.78401 -36.44988 -35.90872 -34.33224 -32.94613 -32.40571 -31.55654 -30.14985 -29.44278 -27.46475 -26.95330 -24.40279 -23.78853 -22.66283 -22.14001 -21.55983 -20.70120 -20.08369 -18.74998 -17.59805 -17.40992 -17.02733 -16.94306 -16.55847 -16.32171 -16.15350 -15.79750 -15.64544 -15.19585 -15.01417 -14.84897 -14.46489 -14.13763 -13.78439 -13.51903 -13.18849 -13.14162 -12.71354 -12.64032 -12.39674 -12.31637 -12.16129 -12.04527 -11.92823 -11.64867 -11.37638 -11.05386 -10.95462 -10.83308 -10.82823 -10.72328 -10.48583 -9.97059 -9.79256 -9.51493 -9.29853 -8.78982 -8.22663 -6.21827 -4.24685 0.58755 1.21760 1.41086 2.27044 2.73435 3.08277 3.19518 3.28385 3.35029 3.43846 3.51625 3.65810 3.76016 3.94538 3.97947 4.12271 4.27014 4.30520 4.33903 4.46962 4.51356 4.54456 4.56992 4.85172 4.94022 5.00617 5.07319 5.09194 5.12932 5.18618 5.21660 5.25435 5.28413 5.37175 5.78840 6.07771 6.13718 6.77240 7.04823 7.13287 7.34815 7.36778 7.65594 8.08170 8.44469 8.71588 8.83782 9.37589 10.89909 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029964 B = 0.001647 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.243350 B =16999.628797 C =17278.342690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.700 5.700 11 C 0.501 3.499 12 O -0.531 6.531 13 C 0.049 3.951 14 O -0.309 6.309 15 C 0.557 3.443 16 O -0.507 6.507 17 C -0.082 4.082 18 C 0.103 3.897 19 N -0.363 5.363 20 C 0.130 3.870 21 C -0.140 4.140 22 H 0.106 0.894 23 C -0.146 4.146 24 C 0.042 3.958 25 O -0.370 6.370 26 C 0.049 3.951 27 N -0.057 5.057 28 N -0.170 5.170 29 H 0.268 0.732 30 H 0.028 0.972 31 H 0.024 0.976 32 H 0.399 0.601 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.210 0.790 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.908 -23.284 -0.512 37.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.099 0.901 9 C 0.100 3.900 10 N -0.351 5.351 11 C 0.284 3.716 12 O -0.408 6.408 13 C -0.028 4.028 14 O -0.222 6.222 15 C 0.399 3.601 16 O -0.395 6.395 17 C -0.219 4.219 18 C -0.054 4.054 19 N -0.147 5.147 20 C 0.009 3.991 21 C -0.159 4.159 22 H 0.125 0.875 23 C -0.185 4.185 24 C -0.035 4.035 25 O -0.288 6.288 26 C -0.028 4.028 27 N -0.038 5.038 28 N -0.045 5.045 29 H 0.078 0.922 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.233 0.767 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.226 0.774 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.114 0.886 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 31.006 -21.497 -0.736 37.736 hybrid contribution -0.743 -0.600 0.282 0.996 sum 30.263 -22.097 -0.454 37.474 Atomic orbital electron populations 1.69874 1.06215 1.27487 1.49260 1.24780 0.94791 0.99175 0.93783 0.86825 0.80617 0.83190 0.79130 1.19788 1.20864 1.18411 1.21073 0.88362 0.95326 1.53585 0.90120 1.19554 0.95306 0.77995 0.97113 1.46045 1.04789 1.11492 1.72744 1.19887 0.83721 0.89389 0.78604 1.90731 1.55249 1.45564 1.49244 1.22910 0.77234 0.97635 1.05047 1.86701 1.21924 1.30721 1.82851 1.19421 0.86133 0.81920 0.72647 1.90885 1.65543 1.36003 1.47023 1.20221 0.92708 0.89587 1.19403 1.23322 0.83576 1.01299 0.97238 1.50614 1.06132 1.08402 1.49546 1.22217 0.83897 0.92024 1.00937 1.22944 0.95140 1.03544 0.94275 0.87543 1.22962 0.97294 0.99009 0.99206 1.23477 0.96214 0.94565 0.89263 1.89202 1.37425 1.69709 1.32467 1.23518 0.90129 0.99329 0.89867 1.82125 1.13803 0.85701 1.22153 1.74932 0.96401 1.25424 1.07718 0.92213 0.95405 0.95850 0.76739 0.88008 0.88026 0.77362 0.87476 0.87230 0.89517 0.89743 0.88628 0.91932 0.92011 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.55 -14.88 9.83 -34.44 -0.34 -15.21 16 8 H 0.08 2.27 7.84 -52.48 -0.41 1.86 16 9 C 0.22 5.45 4.50 -5.19 -0.02 5.42 16 10 N -0.70 -14.02 5.55 -61.47 -0.34 -14.36 16 11 C 0.50 9.77 7.91 -10.99 -0.09 9.68 16 12 O -0.53 -12.72 16.50 -14.10 -0.23 -12.96 16 13 C 0.05 0.73 5.95 36.01 0.21 0.94 16 14 O -0.31 -5.05 9.76 -47.30 -0.46 -5.51 16 15 C 0.56 7.65 7.96 34.46 0.27 7.93 16 16 O -0.51 -6.97 16.65 -19.28 -0.32 -7.29 16 17 C -0.08 -0.97 7.02 -83.57 -0.59 -1.56 16 18 C 0.10 0.73 11.27 -16.82 -0.19 0.54 16 19 N -0.36 -2.43 3.58 -61.05 -0.22 -2.65 16 20 C 0.13 0.31 5.69 -4.04 -0.02 0.29 16 21 C -0.14 -0.50 3.24 -89.05 -0.29 -0.79 16 22 H 0.11 0.57 8.06 -51.93 -0.42 0.15 16 23 C -0.15 -0.28 6.74 -25.16 -0.17 -0.45 16 24 C 0.04 0.14 7.63 37.93 0.29 0.43 16 25 O -0.37 -2.66 11.65 -35.23 -0.41 -3.07 16 26 C 0.05 0.26 7.08 37.93 0.27 0.53 16 27 N -0.06 -0.63 13.57 60.35 0.82 0.19 16 28 N -0.17 -2.36 12.39 32.83 0.41 -1.95 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 31 H 0.02 0.60 7.57 -51.93 -0.39 0.21 16 32 H 0.40 6.81 8.32 -40.82 -0.34 6.47 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 37 H 0.11 -0.05 7.90 -51.93 -0.41 -0.46 16 38 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.08 -0.01 7.73 -51.93 -0.40 -0.42 16 40 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 42 H 0.06 0.25 7.74 -51.93 -0.40 -0.16 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -37.78 377.86 -5.42 -43.19 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -5.70 Total: -2.37 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -0.76 Total: 9.88 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 1.44 Total: -44.38 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -1.43 Total: -28.83 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.78 -5.42 -43.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261812143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.242 kcal (2) G-P(sol) polarization free energy of solvation -37.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds