Wall clock time and date at job start Tue Mar 31 2020 20:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46798 * 304.99621 * 11 10 9 13 13 N 1.46903 * 109.47057 * 64.99341 * 11 10 9 14 14 C 1.50697 * 109.47656 * 184.99593 * 11 10 9 15 15 O 1.21270 * 120.00171 * 260.00024 * 14 11 10 16 16 N 1.34777 * 119.99859 * 79.99629 * 14 11 10 17 17 C 1.47135 * 125.59398 * 0.02562 * 16 14 11 18 18 C 1.54582 * 107.36036 * 180.89968 * 17 16 14 19 19 C 1.53748 * 102.75020 * 20.84961 * 18 17 16 20 20 C 1.52311 * 116.25504 * 94.99734 * 19 18 17 21 21 C 1.54053 * 86.60917 * 143.40486 * 20 19 18 22 22 F 1.39900 * 113.56833 * 90.29700 * 21 20 19 23 23 F 1.39894 * 113.56702 * 220.97830 * 21 20 19 24 24 C 1.52302 * 116.26559 * 197.34213 * 19 18 17 25 25 F 1.39907 * 113.69007 * 331.03136 * 24 19 18 26 26 F 1.39899 * 113.69067 * 102.17146 * 24 19 18 27 27 C 1.47704 * 125.59421 * 179.72192 * 16 14 11 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 30 30 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 31 31 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 32 32 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 33 33 H 1.00904 * 110.99804 * 60.00831 * 13 11 10 34 34 H 1.00906 * 110.99874 * 183.95505 * 13 11 10 35 35 H 1.09000 * 109.86651 * 300.34728 * 17 16 14 36 36 H 1.09003 * 109.86268 * 61.45792 * 17 16 14 37 37 H 1.09003 * 110.75199 * 139.16633 * 18 17 16 38 38 H 1.08999 * 110.75463 * 262.34649 * 18 17 16 39 39 H 1.09006 * 113.68885 * 257.82405 * 20 19 18 40 40 H 1.08992 * 113.69185 * 28.97343 * 20 19 18 41 41 H 1.08995 * 110.39436 * 276.27419 * 27 16 14 42 42 H 1.09002 * 110.39461 * 38.67313 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 1 5.9148 -2.0465 -0.8427 13 7 6.0413 -2.0524 1.2543 14 6 6.0539 -4.0519 -0.1265 15 8 6.4280 -4.6519 0.8587 16 7 6.0873 -4.6509 -1.3334 17 6 5.6657 -4.0408 -2.6042 18 6 5.8596 -5.1016 -3.7118 19 6 5.8804 -6.4192 -2.9199 20 6 4.5545 -7.1610 -2.8112 21 6 5.3765 -8.4592 -2.9213 22 9 5.7913 -8.9653 -1.6848 23 9 4.7813 -9.4308 -3.7331 24 6 6.4570 -7.6302 -3.6414 25 9 6.2981 -7.5851 -5.0307 26 9 7.7624 -7.9480 -3.2512 27 6 6.5592 -6.0252 -1.5983 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6797 -0.8895 30 1 3.8746 -0.6808 0.8905 31 1 3.6579 -3.1514 0.8880 32 1 3.6585 -3.1495 -0.8920 33 1 5.7178 -2.5821 2.0499 34 1 7.0478 -1.9819 1.2520 35 1 4.6159 -3.7530 -2.5466 36 1 6.2804 -3.1662 -2.8171 37 1 5.0249 -5.0852 -4.4127 38 1 6.8037 -4.9465 -4.2341 39 1 4.0605 -7.0360 -1.8476 40 1 3.8875 -6.9918 -3.6564 41 1 7.6437 -6.0403 -1.7063 42 1 6.2470 -6.6951 -0.7971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263188905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:54 Heat of formation + Delta-G solvation = -201.077429 kcal Electronic energy + Delta-G solvation = -30848.076194 eV Core-core repulsion = 25942.555902 eV Total energy + Delta-G solvation = -4905.520292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.13863 -48.99222 -48.31227 -47.53621 -40.78908 -38.98095 -35.63166 -35.44816 -32.81585 -30.96063 -30.55315 -28.95331 -26.68679 -26.28989 -24.70856 -22.91413 -22.63254 -20.35651 -20.12329 -19.53756 -18.81029 -18.45857 -18.06528 -17.32369 -17.12036 -16.75291 -16.29901 -15.98954 -15.73276 -15.39589 -15.06726 -14.71821 -14.62135 -14.49575 -14.27799 -14.20090 -14.15277 -14.11801 -13.92968 -13.79956 -13.22990 -13.09626 -12.70861 -12.61052 -12.56045 -12.34990 -11.89590 -11.78951 -11.68552 -11.36735 -11.14398 -11.00188 -10.91780 -10.46110 -10.04849 -9.76790 -9.66500 -9.17220 -8.90875 -8.58553 -8.47307 -6.03925 -4.01895 1.96338 2.33980 2.55901 2.76936 3.00726 3.14243 3.26227 3.34023 3.35797 3.40993 3.45373 3.97520 4.02177 4.32564 4.43794 4.47095 4.59319 4.65998 4.76937 4.83333 5.01691 5.09377 5.15773 5.23802 5.28658 5.32079 5.35087 5.41829 5.55487 5.60706 5.91831 6.23034 6.40373 6.79615 7.13649 7.31192 7.32929 7.50570 7.58517 7.81272 8.03339 8.52788 9.00327 9.59037 11.09459 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017007 B = 0.002955 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.021307 B = 9472.565642 C =10053.678963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.067 3.933 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.264 1.264 6 H -0.291 1.291 7 C -0.522 4.522 8 H 0.069 0.931 9 C -0.003 4.003 10 C -0.087 4.087 11 C 0.080 3.920 12 H 0.099 0.901 13 N -0.810 5.810 14 C 0.502 3.498 15 O -0.545 6.545 16 N -0.617 5.617 17 C 0.096 3.904 18 C -0.109 4.109 19 C -0.128 4.128 20 C -0.142 4.142 21 C 0.241 3.759 22 F -0.152 7.152 23 F -0.168 7.168 24 C 0.260 3.740 25 F -0.149 7.149 26 F -0.165 7.165 27 C 0.131 3.869 28 H 0.262 0.738 29 H 0.013 0.987 30 H 0.029 0.971 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.351 0.649 34 H 0.336 0.664 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.085 0.915 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.766 -14.779 -10.391 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.189 1.189 6 H -0.217 1.217 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.041 4.041 10 C -0.125 4.125 11 C -0.036 4.036 12 H 0.117 0.883 13 N -0.338 5.338 14 C 0.290 3.710 15 O -0.422 6.422 16 N -0.353 5.353 17 C -0.027 4.027 18 C -0.147 4.147 19 C -0.130 4.130 20 C -0.180 4.180 21 C 0.203 3.797 22 F -0.133 7.133 23 F -0.149 7.149 24 C 0.221 3.779 25 F -0.129 7.129 26 F -0.145 7.145 27 C 0.007 3.993 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.165 0.835 34 H 0.148 0.852 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.143 0.857 40 H 0.154 0.846 41 H 0.103 0.897 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.414 -14.308 -9.970 22.625 hybrid contribution 1.050 -0.502 -0.128 1.171 sum 15.464 -14.810 -10.098 23.673 Atomic orbital electron populations 1.69922 1.06364 1.26869 1.51309 1.25012 0.94684 0.99212 0.94531 0.86745 0.80228 0.83445 0.78628 1.20276 1.18899 1.21699 1.21155 0.89670 0.94313 1.50873 0.91325 1.19479 0.96387 0.91026 0.97196 1.21480 0.87833 1.01681 1.01521 1.21871 0.99459 0.87179 0.95093 0.88344 1.59055 1.15480 1.55910 1.03398 1.22506 0.76908 0.90813 0.80759 1.90681 1.48832 1.66503 1.36203 1.48667 1.65076 1.13843 1.07683 1.22259 1.02331 0.96118 0.81947 1.22443 1.04976 0.90144 0.97142 1.23012 0.96044 0.95301 0.98648 1.23950 0.96700 0.88471 1.08869 1.23345 0.92770 0.85726 0.77857 1.93120 1.90431 1.88618 1.41108 1.93099 1.83948 1.66136 1.71684 1.22716 0.79962 0.96533 0.78642 1.93110 1.95167 1.96636 1.28005 1.93097 1.38203 1.93310 1.89924 1.21694 0.98876 0.85368 0.93317 0.92800 0.96907 0.95232 0.92183 0.92162 0.83506 0.85215 0.89188 0.90149 0.88001 0.88995 0.85679 0.84592 0.89720 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.44 13.96 55.43 0.77 -26.67 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.52 -14.32 9.66 -34.44 -0.33 -14.65 16 8 H 0.07 2.03 7.99 -52.49 -0.42 1.61 16 9 C 0.00 -0.08 3.93 -27.88 -0.11 -0.19 16 10 C -0.09 -1.57 4.77 -26.73 -0.13 -1.69 16 11 C 0.08 1.18 2.56 -68.87 -0.18 1.00 16 12 H 0.10 1.32 7.51 -51.93 -0.39 0.93 16 13 N -0.81 -12.07 8.44 -5.65 -0.05 -12.12 16 14 C 0.50 7.19 7.09 -10.99 -0.08 7.11 16 15 O -0.55 -9.40 16.53 5.57 0.09 -9.31 16 16 N -0.62 -6.92 3.34 -170.80 -0.57 -7.49 16 17 C 0.10 0.82 6.20 -2.86 -0.02 0.80 16 18 C -0.11 -0.70 5.91 -25.51 -0.15 -0.85 16 19 C -0.13 -1.00 0.89 -154.51 -0.14 -1.14 16 20 C -0.14 -1.01 7.18 -26.53 -0.19 -1.20 16 21 C 0.24 2.16 3.18 -25.68 -0.08 2.08 16 22 F -0.15 -1.58 16.27 2.25 0.04 -1.55 16 23 F -0.17 -1.66 17.20 2.25 0.04 -1.62 16 24 C 0.26 2.25 2.97 -26.54 -0.08 2.17 16 25 F -0.15 -1.30 16.71 2.25 0.04 -1.26 16 26 F -0.16 -1.64 16.27 2.25 0.04 -1.60 16 27 C 0.13 1.31 5.70 -3.02 -0.02 1.29 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 29 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 30 H 0.03 0.69 7.18 -51.93 -0.37 0.31 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.01 6.61 -51.93 -0.34 0.67 16 33 H 0.35 5.37 8.58 -39.29 -0.34 5.03 16 34 H 0.34 4.29 9.06 -39.29 -0.36 3.93 16 35 H 0.09 0.82 6.68 -51.93 -0.35 0.48 16 36 H 0.08 0.61 7.93 -51.93 -0.41 0.19 16 37 H 0.10 0.50 7.99 -51.93 -0.42 0.08 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.12 0.92 8.13 -51.93 -0.42 0.50 16 40 H 0.14 0.70 8.05 -51.93 -0.42 0.28 16 41 H 0.08 0.83 7.68 -51.93 -0.40 0.43 16 42 H 0.09 1.05 7.32 -51.93 -0.38 0.67 16 LS Contribution 354.94 15.07 5.35 5.35 Total: -1.00 -32.76 354.94 -5.92 -38.68 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -5.40 Total: 4.34 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.60 Total: -3.48 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.16 Total: -46.28 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.15 Total: -6.03 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.76 -5.92 -38.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263188905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.399 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds