Wall clock time and date at job start Tue Mar 31 2020 20:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47535 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46798 * 304.99621 * 11 10 9 13 13 N 1.46903 * 109.47057 * 64.99341 * 11 10 9 14 14 C 1.50697 * 109.47656 * 184.99593 * 11 10 9 15 15 O 1.21270 * 120.00171 * 260.00024 * 14 11 10 16 16 N 1.34777 * 119.99859 * 79.99629 * 14 11 10 17 17 C 1.47135 * 125.59398 * 0.02562 * 16 14 11 18 18 C 1.54582 * 107.36036 * 180.89968 * 17 16 14 19 19 C 1.53748 * 102.75020 * 20.84961 * 18 17 16 20 20 C 1.52311 * 116.25504 * 94.99734 * 19 18 17 21 21 C 1.54053 * 86.60917 * 143.40486 * 20 19 18 22 22 F 1.39900 * 113.56833 * 90.29700 * 21 20 19 23 23 F 1.39894 * 113.56702 * 220.97830 * 21 20 19 24 24 C 1.52302 * 116.26559 * 197.34213 * 19 18 17 25 25 F 1.39907 * 113.69007 * 331.03136 * 24 19 18 26 26 F 1.39899 * 113.69067 * 102.17146 * 24 19 18 27 27 C 1.47704 * 125.59421 * 179.72192 * 16 14 11 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 30 30 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 31 31 H 1.09005 * 109.46767 * 299.99649 * 10 9 7 32 32 H 1.09002 * 109.47113 * 59.99309 * 10 9 7 33 33 H 1.00904 * 110.99804 * 60.00831 * 13 11 10 34 34 H 1.00906 * 110.99874 * 183.95505 * 13 11 10 35 35 H 1.09000 * 109.86651 * 300.34728 * 17 16 14 36 36 H 1.09003 * 109.86268 * 61.45792 * 17 16 14 37 37 H 1.09003 * 110.75199 * 139.16633 * 18 17 16 38 38 H 1.08999 * 110.75463 * 262.34649 * 18 17 16 39 39 H 1.09006 * 113.68885 * 257.82405 * 20 19 18 40 40 H 1.08992 * 113.69185 * 28.97343 * 20 19 18 41 41 H 1.08995 * 110.39436 * 276.27419 * 27 16 14 42 42 H 1.09002 * 110.39461 * 38.67313 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5515 -2.6367 -0.0014 12 1 5.9148 -2.0465 -0.8427 13 7 6.0413 -2.0524 1.2543 14 6 6.0539 -4.0519 -0.1265 15 8 6.4280 -4.6519 0.8587 16 7 6.0873 -4.6509 -1.3334 17 6 5.6657 -4.0408 -2.6042 18 6 5.8596 -5.1016 -3.7118 19 6 5.8804 -6.4192 -2.9199 20 6 4.5545 -7.1610 -2.8112 21 6 5.3765 -8.4592 -2.9213 22 9 5.7913 -8.9653 -1.6848 23 9 4.7813 -9.4308 -3.7331 24 6 6.4570 -7.6302 -3.6414 25 9 6.2981 -7.5851 -5.0307 26 9 7.7624 -7.9480 -3.2512 27 6 6.5592 -6.0252 -1.5983 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6797 -0.8895 30 1 3.8746 -0.6808 0.8905 31 1 3.6579 -3.1514 0.8880 32 1 3.6585 -3.1495 -0.8920 33 1 5.7178 -2.5821 2.0499 34 1 7.0478 -1.9819 1.2520 35 1 4.6159 -3.7530 -2.5466 36 1 6.2804 -3.1662 -2.8171 37 1 5.0249 -5.0852 -4.4127 38 1 6.8037 -4.9465 -4.2341 39 1 4.0605 -7.0360 -1.8476 40 1 3.8875 -6.9918 -3.6564 41 1 7.6437 -6.0403 -1.7063 42 1 6.2470 -6.6951 -0.7971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263188905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:53 Heat of formation + Delta-G solvation = -223.454713 kcal Electronic energy + Delta-G solvation = -30849.046546 eV Core-core repulsion = 25942.555902 eV Total energy + Delta-G solvation = -4906.490644 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.85984 -49.72093 -49.04652 -48.27268 -41.67281 -39.92465 -36.86028 -36.45338 -34.75987 -32.27681 -31.68493 -29.83605 -28.11172 -26.96021 -25.84615 -24.17965 -23.34206 -21.95608 -20.86704 -20.51016 -19.52839 -19.25784 -18.98723 -18.68724 -18.05858 -17.97973 -17.10321 -17.05678 -16.84672 -16.39586 -16.08801 -15.80090 -15.45919 -15.34716 -15.28550 -15.25086 -14.97856 -14.90659 -14.89278 -14.73422 -14.63651 -14.20232 -13.84406 -13.80419 -13.53570 -13.33874 -13.29203 -12.78124 -12.54221 -12.51092 -12.32018 -11.99557 -11.91006 -11.80331 -11.71911 -11.55456 -11.26020 -11.13702 -10.67965 -9.81906 -9.70925 -8.21681 -6.24489 1.26768 1.41366 1.44549 1.45734 1.57693 1.60186 2.01241 2.31045 2.44129 2.46190 2.56378 2.71543 3.15553 3.24497 3.36699 3.51102 3.66966 3.74112 3.82203 4.02185 4.11085 4.15734 4.26000 4.39620 4.45062 4.49105 4.55792 4.69245 4.74467 4.82227 4.87190 5.00765 5.12569 5.20901 5.54222 5.68478 5.76337 6.04444 6.31115 6.35986 6.48543 6.84324 6.96133 7.40200 8.95011 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017007 B = 0.002955 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.021307 B = 9472.565642 C =10053.678963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.004 3.996 3 Si 0.950 3.050 4 H -0.276 1.276 5 H -0.238 1.238 6 H -0.289 1.289 7 C -0.528 4.528 8 H 0.030 0.970 9 C 0.003 3.997 10 C -0.078 4.078 11 C 0.090 3.910 12 H 0.121 0.879 13 N -0.819 5.819 14 C 0.502 3.498 15 O -0.581 6.581 16 N -0.611 5.611 17 C 0.087 3.913 18 C -0.101 4.101 19 C -0.120 4.120 20 C -0.135 4.135 21 C 0.230 3.770 22 F -0.165 7.165 23 F -0.175 7.175 24 C 0.264 3.736 25 F -0.146 7.146 26 F -0.174 7.174 27 C 0.128 3.872 28 H 0.264 0.736 29 H 0.027 0.973 30 H 0.024 0.976 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.346 0.654 34 H 0.349 0.651 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.121 0.879 40 H 0.162 0.838 41 H 0.088 0.912 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.456 -13.759 -12.217 24.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.192 4.192 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.161 1.161 6 H -0.215 1.215 7 C -0.566 4.566 8 H 0.048 0.952 9 C -0.034 4.034 10 C -0.116 4.116 11 C -0.026 4.026 12 H 0.139 0.861 13 N -0.348 5.348 14 C 0.290 3.710 15 O -0.461 6.461 16 N -0.345 5.345 17 C -0.034 4.034 18 C -0.138 4.138 19 C -0.122 4.122 20 C -0.172 4.172 21 C 0.192 3.808 22 F -0.146 7.146 23 F -0.155 7.155 24 C 0.225 3.775 25 F -0.126 7.126 26 F -0.155 7.155 27 C 0.005 3.995 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.140 0.860 40 H 0.179 0.821 41 H 0.106 0.894 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.129 -13.306 -11.842 24.030 hybrid contribution 0.482 -0.940 0.426 1.139 sum 16.611 -14.246 -11.416 24.682 Atomic orbital electron populations 1.70080 1.08380 1.27952 1.53217 1.25969 0.95477 1.03429 0.94330 0.85662 0.79765 0.78326 0.78850 1.20134 1.16140 1.21488 1.21544 0.92441 0.92819 1.49757 0.95161 1.19363 0.92868 0.93865 0.97320 1.21261 0.90423 0.98776 1.01143 1.21676 0.96909 0.88091 0.95900 0.86112 1.59059 1.16592 1.55826 1.03287 1.22273 0.76947 0.90542 0.81227 1.90668 1.50684 1.67095 1.37668 1.48638 1.63718 1.14311 1.07826 1.22531 1.02440 0.97394 0.81074 1.22525 1.06832 0.87896 0.96551 1.22891 0.95841 0.95916 0.97570 1.24058 0.96612 0.86741 1.09802 1.23685 0.93568 0.86084 0.77425 1.93092 1.90654 1.88872 1.41947 1.93083 1.84094 1.66551 1.71810 1.22739 0.79374 0.96656 0.78709 1.93118 1.95105 1.96629 1.27774 1.93080 1.38890 1.93435 1.90052 1.21710 0.99297 0.84447 0.94057 0.92741 0.95508 0.95743 0.94345 0.91025 0.84049 0.83777 0.89501 0.88370 0.85689 0.87546 0.86047 0.82061 0.89406 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.93 13.96 21.45 0.30 -58.63 16 2 C 0.00 0.24 5.47 84.66 0.46 0.70 16 3 Si 0.95 43.26 27.47 68.60 1.88 45.14 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 6 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.53 -29.12 9.66 25.60 0.25 -28.87 16 8 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 9 C 0.00 0.14 3.93 29.85 0.12 0.26 16 10 C -0.08 -2.72 4.77 30.59 0.15 -2.57 16 11 C 0.09 2.47 2.56 44.17 0.11 2.59 16 12 H 0.12 2.80 7.51 -2.39 -0.02 2.78 16 13 N -0.82 -23.10 8.44 -171.80 -1.45 -24.55 16 14 C 0.50 13.72 7.09 87.66 0.62 14.35 16 15 O -0.58 -19.88 16.53 -3.00 -0.05 -19.93 16 16 N -0.61 -12.53 3.34 -812.67 -2.71 -15.24 16 17 C 0.09 1.20 6.20 86.80 0.54 1.74 16 18 C -0.10 -0.92 5.91 31.38 0.19 -0.73 16 19 C -0.12 -1.61 0.89 -52.18 -0.05 -1.66 16 20 C -0.13 -1.67 7.18 30.72 0.22 -1.45 16 21 C 0.23 3.89 3.18 31.28 0.10 3.99 16 22 F -0.17 -3.43 16.27 44.97 0.73 -2.70 16 23 F -0.17 -3.28 17.20 44.97 0.77 -2.51 16 24 C 0.26 4.09 2.97 30.72 0.09 4.19 16 25 F -0.15 -2.18 16.71 44.97 0.75 -1.43 16 26 F -0.17 -3.26 16.27 44.97 0.73 -2.53 16 27 C 0.13 2.39 5.70 86.39 0.49 2.89 16 28 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 29 H 0.03 1.09 7.20 -2.38 -0.02 1.08 16 30 H 0.02 1.09 7.18 -2.39 -0.02 1.07 16 31 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.07 2.31 6.61 -2.39 -0.02 2.29 16 33 H 0.35 10.41 8.58 -89.69 -0.77 9.64 16 34 H 0.35 8.25 9.06 -89.69 -0.81 7.44 16 35 H 0.09 1.31 6.68 -2.39 -0.02 1.29 16 36 H 0.10 1.07 7.93 -2.39 -0.02 1.05 16 37 H 0.12 0.64 7.99 -2.39 -0.02 0.62 16 38 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.12 1.65 8.13 -2.38 -0.02 1.63 16 40 H 0.16 1.17 8.05 -2.39 -0.02 1.15 16 41 H 0.09 1.61 7.68 -2.39 -0.02 1.59 16 42 H 0.08 1.71 7.32 -2.39 -0.02 1.69 16 Total: -1.00 -71.97 354.94 3.70 -68.27 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -0.55 Total: 18.70 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: 3.29 Total: -4.59 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -3.86 Total: -98.42 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.05 Total: -19.93 kcal Atomic # 9 Polarization: -12.15 SS G_CDS: 2.99 Total: -9.17 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.14 kcal Total: -71.97 3.70 -68.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263188905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.188 kcal (2) G-P(sol) polarization free energy of solvation -71.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds