Wall clock time and date at job start Tue Mar 31 2020 20:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47600 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47319 * 305.00203 * 11 10 9 13 13 N 1.46903 * 109.46959 * 64.99943 * 11 10 9 14 14 C 1.50699 * 109.47514 * 184.99448 * 11 10 9 15 15 O 1.21273 * 120.00397 * 260.00573 * 14 11 10 16 16 N 1.34783 * 119.99595 * 80.00280 * 14 11 10 17 17 C 1.47532 * 125.65735 * 0.02583 * 16 14 11 18 18 C 1.55136 * 104.99281 * 203.91066 * 17 16 14 19 19 C 1.53946 * 101.42650 * 324.25606 * 18 17 16 20 20 C 1.52506 * 115.78563 * 264.91291 * 19 18 17 21 21 C 1.54018 * 86.67640 * 217.22839 * 20 19 18 22 22 F 1.39903 * 113.57303 * 269.85304 * 21 20 19 23 23 F 1.39909 * 113.64473 * 139.09080 * 21 20 19 24 24 C 1.52495 * 115.80899 * 163.39668 * 19 18 17 25 25 F 1.39903 * 113.67523 * 257.19307 * 24 19 18 26 26 F 1.39895 * 113.68122 * 28.20482 * 24 19 18 27 27 C 1.47334 * 125.65818 * 179.71558 * 16 14 11 28 28 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 30 30 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 31 31 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 32 32 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 33 33 H 1.00893 * 111.00208 * 59.99565 * 13 11 10 34 34 H 1.00904 * 111.00274 * 183.96008 * 13 11 10 35 35 H 1.09001 * 110.33758 * 322.78975 * 17 16 14 36 36 H 1.08994 * 110.33596 * 84.92645 * 17 16 14 37 37 H 1.08999 * 111.03430 * 82.29265 * 18 17 16 38 38 H 1.09003 * 111.03084 * 206.17888 * 18 17 16 39 39 H 1.09002 * 113.68306 * 331.66939 * 20 19 18 40 40 H 1.08999 * 113.68210 * 102.78658 * 20 19 18 41 41 H 1.09002 * 109.97740 * 297.42126 * 27 16 14 42 42 H 1.09010 * 109.97515 * 58.70112 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 1 0.7882 -5.0068 0.8421 13 7 0.7279 -5.1189 -1.2548 14 6 2.4546 -6.1299 0.1238 15 8 2.7861 -6.7536 -0.8620 16 7 2.9579 -6.4587 1.3301 17 6 2.6419 -5.7881 2.6057 18 6 3.8579 -6.0791 3.5241 19 6 4.2319 -7.5083 3.0911 20 6 3.6440 -8.6330 3.9368 21 6 4.9829 -9.3660 3.7318 22 9 5.0032 -10.1881 2.6000 23 9 5.4500 -10.0132 4.8809 24 6 5.6217 -7.9837 3.5008 25 9 6.5531 -7.9626 2.4571 26 9 6.0999 -7.3812 4.6693 27 6 3.9099 -7.5516 1.5947 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5570 0.8898 30 1 0.6239 -2.5567 -0.8903 31 1 2.8717 -3.6044 -0.8905 32 1 2.8717 -3.6044 0.8894 33 1 1.3473 -5.1033 -2.0511 34 1 0.1634 -5.9552 -1.2521 35 1 2.5315 -4.7146 2.4521 36 1 1.7314 -6.2039 3.0369 37 1 4.6735 -5.3839 3.3253 38 1 3.5699 -6.0507 4.5750 39 1 3.4543 -8.3491 4.9720 40 1 2.7952 -9.1333 3.4707 41 1 3.4585 -8.5095 1.3362 42 1 4.8208 -7.4004 1.0152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263188906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:58 Heat of formation + Delta-G solvation = -203.297164 kcal Electronic energy + Delta-G solvation = -30688.221913 eV Core-core repulsion = 25782.605367 eV Total energy + Delta-G solvation = -4905.616547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.15025 -49.00579 -48.32010 -47.54784 -40.73088 -38.95024 -35.60719 -35.30333 -32.84167 -30.82516 -30.17482 -28.86398 -26.46477 -26.23767 -24.65257 -23.00923 -22.68041 -20.51799 -20.08055 -19.44515 -18.82111 -18.42010 -18.01007 -17.35239 -17.13104 -16.35233 -16.25686 -16.10802 -15.46106 -15.33993 -15.06533 -14.74674 -14.59026 -14.53048 -14.34794 -14.22736 -14.17442 -14.16624 -13.87166 -13.68452 -13.19628 -12.96068 -12.70160 -12.58481 -12.29880 -12.01877 -11.96299 -11.72575 -11.59773 -11.32849 -11.09270 -10.89501 -10.71737 -10.61256 -10.20382 -9.83774 -9.42287 -9.06081 -8.85415 -8.42627 -8.26425 -5.97399 -3.99866 1.95217 2.37615 2.62128 2.74008 3.03474 3.14139 3.25562 3.30610 3.33648 3.38660 3.40958 3.96453 4.04390 4.31615 4.41015 4.46794 4.68717 4.71855 4.84442 4.85370 4.91913 5.05416 5.19144 5.31227 5.38050 5.39651 5.44123 5.46060 5.60730 5.74968 5.99430 6.37448 6.59362 7.01456 7.25710 7.43357 7.70696 7.72729 7.90988 8.08403 8.12431 8.44024 9.07826 9.63605 11.13364 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.002806 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.950455 B = 9977.882284 C =10857.745845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.288 1.288 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.051 0.949 9 C 0.033 3.967 10 C -0.096 4.096 11 C 0.084 3.916 12 H 0.099 0.901 13 N -0.806 5.806 14 C 0.501 3.499 15 O -0.547 6.547 16 N -0.618 5.618 17 C 0.095 3.905 18 C -0.111 4.111 19 C -0.126 4.126 20 C -0.143 4.143 21 C 0.241 3.759 22 F -0.152 7.152 23 F -0.169 7.169 24 C 0.258 3.742 25 F -0.163 7.163 26 F -0.148 7.148 27 C 0.130 3.870 28 H 0.260 0.740 29 H 0.013 0.987 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.349 0.651 34 H 0.335 0.665 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.135 0.865 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.895 -19.906 11.728 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.213 1.213 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.070 0.930 9 C -0.004 4.004 10 C -0.135 4.135 11 C -0.032 4.032 12 H 0.117 0.883 13 N -0.334 5.334 14 C 0.289 3.711 15 O -0.424 6.424 16 N -0.354 5.354 17 C -0.028 4.028 18 C -0.149 4.149 19 C -0.128 4.128 20 C -0.181 4.181 21 C 0.203 3.797 22 F -0.133 7.133 23 F -0.149 7.149 24 C 0.220 3.780 25 F -0.144 7.144 26 F -0.128 7.128 27 C 0.007 3.993 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.163 0.837 34 H 0.146 0.854 35 H 0.119 0.881 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.153 0.847 40 H 0.141 0.859 41 H 0.101 0.899 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.564 -19.415 11.284 23.396 hybrid contribution 1.550 -0.211 0.041 1.565 sum 8.113 -19.626 11.325 24.068 Atomic orbital electron populations 1.69961 1.05948 1.26581 1.50632 1.24981 0.94800 0.99038 0.95404 0.86714 0.79622 0.83411 0.78562 1.21320 1.20348 1.20309 1.21230 0.92858 0.91300 1.50891 0.93042 1.19003 0.93479 0.89718 0.98230 1.21696 0.98934 0.92092 1.00742 1.21843 0.93272 0.92938 0.95151 0.88339 1.59014 1.26818 1.44289 1.03249 1.22670 0.82008 0.85743 0.80673 1.90671 1.61157 1.54403 1.36189 1.48708 1.45630 1.33194 1.07846 1.22556 0.97104 1.00287 0.82857 1.22639 0.99377 0.91888 1.01012 1.22975 0.91500 0.99523 0.98811 1.24024 0.95905 0.93961 1.04163 1.23338 0.97225 0.84744 0.74431 1.93122 1.96893 1.73602 1.49668 1.93101 1.89692 1.83696 1.48437 1.22758 0.86501 0.92729 0.76051 1.93106 1.68342 1.96547 1.56363 1.93109 1.89448 1.83677 1.46615 1.21384 0.95286 0.92512 0.90112 0.93005 0.96875 0.94640 0.92748 0.92769 0.83709 0.85367 0.88059 0.90424 0.88676 0.87977 0.84689 0.85879 0.89913 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.03 0.80 4.86 -27.89 -0.14 0.67 16 10 C -0.10 -1.86 4.64 -26.73 -0.12 -1.98 16 11 C 0.08 1.34 2.43 -68.87 -0.17 1.17 16 12 H 0.10 1.45 7.68 -51.93 -0.40 1.06 16 13 N -0.81 -13.08 8.44 -5.66 -0.05 -13.13 16 14 C 0.50 7.65 7.09 -10.98 -0.08 7.57 16 15 O -0.55 -9.95 16.58 5.56 0.09 -9.86 16 16 N -0.62 -7.39 3.34 -170.77 -0.57 -7.96 16 17 C 0.09 0.85 6.40 -2.35 -0.02 0.84 16 18 C -0.11 -0.80 5.98 -25.11 -0.15 -0.95 16 19 C -0.13 -0.98 0.89 -154.49 -0.14 -1.12 16 20 C -0.14 -0.77 7.10 -26.45 -0.19 -0.96 16 21 C 0.24 1.97 3.18 -25.70 -0.08 1.89 16 22 F -0.15 -1.46 16.59 2.25 0.04 -1.42 16 23 F -0.17 -1.53 17.20 2.25 0.04 -1.49 16 24 C 0.26 2.33 2.96 -26.46 -0.08 2.25 16 25 F -0.16 -1.82 16.01 2.25 0.04 -1.78 16 26 F -0.15 -1.37 16.67 2.25 0.04 -1.33 16 27 C 0.13 1.37 5.80 -3.52 -0.02 1.35 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.04 0.95 7.75 -51.93 -0.40 0.55 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.97 6.59 -51.93 -0.34 0.63 16 33 H 0.35 5.79 8.58 -39.30 -0.34 5.45 16 34 H 0.33 4.66 9.06 -39.29 -0.36 4.31 16 35 H 0.10 1.05 6.05 -51.93 -0.31 0.74 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.48 7.98 -51.93 -0.41 0.07 16 39 H 0.14 0.43 8.03 -51.93 -0.42 0.02 16 40 H 0.12 0.52 8.02 -51.93 -0.42 0.11 16 41 H 0.08 0.84 7.68 -51.93 -0.40 0.44 16 42 H 0.09 1.05 7.17 -51.92 -0.37 0.68 16 LS Contribution 358.08 15.07 5.40 5.40 Total: -1.00 -32.73 358.08 -6.25 -38.98 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.40 Total: 4.29 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.59 Total: -2.44 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.12 Total: -46.67 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 0.15 Total: -6.01 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.73 -6.25 -38.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263188906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.312 kcal (2) G-P(sol) polarization free energy of solvation -32.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds