Wall clock time and date at job start Tue Mar 31 2020 20:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47600 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47319 * 305.00203 * 11 10 9 13 13 N 1.46903 * 109.46959 * 64.99943 * 11 10 9 14 14 C 1.50699 * 109.47514 * 184.99448 * 11 10 9 15 15 O 1.21273 * 120.00397 * 260.00573 * 14 11 10 16 16 N 1.34783 * 119.99595 * 80.00280 * 14 11 10 17 17 C 1.47532 * 125.65735 * 0.02583 * 16 14 11 18 18 C 1.55136 * 104.99281 * 203.91066 * 17 16 14 19 19 C 1.53946 * 101.42650 * 324.25606 * 18 17 16 20 20 C 1.52506 * 115.78563 * 264.91291 * 19 18 17 21 21 C 1.54018 * 86.67640 * 217.22839 * 20 19 18 22 22 F 1.39903 * 113.57303 * 269.85304 * 21 20 19 23 23 F 1.39909 * 113.64473 * 139.09080 * 21 20 19 24 24 C 1.52495 * 115.80899 * 163.39668 * 19 18 17 25 25 F 1.39903 * 113.67523 * 257.19307 * 24 19 18 26 26 F 1.39895 * 113.68122 * 28.20482 * 24 19 18 27 27 C 1.47334 * 125.65818 * 179.71558 * 16 14 11 28 28 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 30 30 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 31 31 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 32 32 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 33 33 H 1.00893 * 111.00208 * 59.99565 * 13 11 10 34 34 H 1.00904 * 111.00274 * 183.96008 * 13 11 10 35 35 H 1.09001 * 110.33758 * 322.78975 * 17 16 14 36 36 H 1.08994 * 110.33596 * 84.92645 * 17 16 14 37 37 H 1.08999 * 111.03430 * 82.29265 * 18 17 16 38 38 H 1.09003 * 111.03084 * 206.17888 * 18 17 16 39 39 H 1.09002 * 113.68306 * 331.66939 * 20 19 18 40 40 H 1.08999 * 113.68210 * 102.78658 * 20 19 18 41 41 H 1.09002 * 109.97740 * 297.42126 * 27 16 14 42 42 H 1.09010 * 109.97515 * 58.70112 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 1 0.7882 -5.0068 0.8421 13 7 0.7279 -5.1189 -1.2548 14 6 2.4546 -6.1299 0.1238 15 8 2.7861 -6.7536 -0.8620 16 7 2.9579 -6.4587 1.3301 17 6 2.6419 -5.7881 2.6057 18 6 3.8579 -6.0791 3.5241 19 6 4.2319 -7.5083 3.0911 20 6 3.6440 -8.6330 3.9368 21 6 4.9829 -9.3660 3.7318 22 9 5.0032 -10.1881 2.6000 23 9 5.4500 -10.0132 4.8809 24 6 5.6217 -7.9837 3.5008 25 9 6.5531 -7.9626 2.4571 26 9 6.0999 -7.3812 4.6693 27 6 3.9099 -7.5516 1.5947 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5570 0.8898 30 1 0.6239 -2.5567 -0.8903 31 1 2.8717 -3.6044 -0.8905 32 1 2.8717 -3.6044 0.8894 33 1 1.3473 -5.1033 -2.0511 34 1 0.1634 -5.9552 -1.2521 35 1 2.5315 -4.7146 2.4521 36 1 1.7314 -6.2039 3.0369 37 1 4.6735 -5.3839 3.3253 38 1 3.5699 -6.0507 4.5750 39 1 3.4543 -8.3491 4.9720 40 1 2.7952 -9.1333 3.4707 41 1 3.4585 -8.5095 1.3362 42 1 4.8208 -7.4004 1.0152 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263188906.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:57 Heat of formation + Delta-G solvation = -225.243192 kcal Electronic energy + Delta-G solvation = -30689.173564 eV Core-core repulsion = 25782.605367 eV Total energy + Delta-G solvation = -4906.568198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.136 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.84132 -49.70061 -49.03256 -48.25601 -41.66021 -39.93594 -36.83441 -36.44789 -34.80316 -31.94633 -31.59857 -29.79212 -27.88822 -26.93302 -25.90121 -24.37223 -23.35567 -22.13781 -20.82636 -20.48384 -19.50602 -19.18422 -18.90277 -18.33011 -18.06527 -18.03180 -17.16364 -17.06450 -16.71793 -16.47877 -16.34685 -15.78477 -15.50835 -15.35101 -15.32157 -15.07747 -14.95333 -14.87912 -14.87740 -14.61393 -14.33562 -14.10202 -13.84001 -13.67096 -13.41270 -13.37757 -13.23091 -12.76412 -12.57866 -12.51922 -12.36909 -12.24932 -11.98131 -11.74236 -11.71216 -11.61857 -11.24461 -11.01082 -10.46690 -9.83802 -9.66871 -8.12184 -6.22012 1.30684 1.40795 1.44040 1.45642 1.53271 1.60810 2.01737 2.33971 2.45882 2.49383 2.60279 2.71812 3.21096 3.25479 3.37577 3.50900 3.68843 3.74816 3.84487 4.07094 4.09293 4.16839 4.29812 4.43943 4.47714 4.51339 4.59220 4.65478 4.77496 4.85343 4.94841 4.99997 5.13881 5.27212 5.58947 5.86257 6.00453 6.06977 6.30039 6.32535 6.49937 6.95617 6.96474 7.46034 8.98612 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.017345 B = 0.002806 C = 0.002578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.950455 B = 9977.882284 C =10857.745845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.956 3.044 4 H -0.284 1.284 5 H -0.265 1.265 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.042 3.958 10 C -0.082 4.082 11 C 0.093 3.907 12 H 0.115 0.885 13 N -0.818 5.818 14 C 0.502 3.498 15 O -0.582 6.582 16 N -0.613 5.613 17 C 0.086 3.914 18 C -0.105 4.105 19 C -0.118 4.118 20 C -0.121 4.121 21 C 0.234 3.766 22 F -0.164 7.164 23 F -0.174 7.174 24 C 0.246 3.754 25 F -0.182 7.182 26 F -0.149 7.149 27 C 0.128 3.872 28 H 0.262 0.738 29 H -0.001 1.001 30 H 0.005 0.995 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.345 0.655 34 H 0.348 0.652 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.168 0.832 40 H 0.142 0.858 41 H 0.088 0.912 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.931 -20.224 13.892 25.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.781 3.219 4 H -0.210 1.210 5 H -0.190 1.190 6 H -0.199 1.199 7 C -0.583 4.583 8 H 0.072 0.928 9 C 0.005 3.995 10 C -0.121 4.121 11 C -0.023 4.023 12 H 0.133 0.867 13 N -0.347 5.347 14 C 0.290 3.710 15 O -0.462 6.462 16 N -0.346 5.346 17 C -0.035 4.035 18 C -0.143 4.143 19 C -0.120 4.120 20 C -0.158 4.158 21 C 0.196 3.804 22 F -0.145 7.145 23 F -0.155 7.155 24 C 0.208 3.792 25 F -0.163 7.163 26 F -0.129 7.129 27 C 0.005 3.995 28 H 0.071 0.929 29 H 0.018 0.982 30 H 0.023 0.977 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.101 0.899 38 H 0.157 0.843 39 H 0.186 0.814 40 H 0.160 0.840 41 H 0.106 0.894 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.613 -19.747 13.496 24.815 hybrid contribution 1.580 -0.133 -0.617 1.701 sum 8.193 -19.880 12.878 25.063 Atomic orbital electron populations 1.70087 1.07520 1.27545 1.51630 1.25841 0.95655 1.02802 0.95008 0.85650 0.78389 0.78893 0.78994 1.20973 1.18972 1.19929 1.21692 0.93284 0.92783 1.50496 0.92800 1.18796 0.93736 0.90988 0.95950 1.21414 0.97817 0.92168 1.00659 1.21618 0.93426 0.91584 0.95645 0.86727 1.59003 1.27110 1.45312 1.03266 1.22280 0.81957 0.85430 0.81294 1.90655 1.62347 1.55574 1.37665 1.48677 1.44725 1.33314 1.07928 1.22852 0.99366 0.99499 0.81763 1.22698 0.98089 0.90900 1.02574 1.22861 0.91019 1.00942 0.97183 1.24161 0.94573 0.91501 1.05561 1.23638 0.98783 0.84050 0.73902 1.93099 1.97029 1.73943 1.50405 1.93090 1.89978 1.83790 1.48607 1.23159 0.86536 0.93811 0.75701 1.93067 1.69149 1.96712 1.57335 1.93104 1.89515 1.83799 1.46498 1.21415 0.93986 0.92079 0.92062 0.92921 0.98238 0.97704 0.94366 0.91299 0.84187 0.83890 0.89427 0.87263 0.89892 0.84350 0.81432 0.84027 0.89386 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.24 13.29 21.45 0.28 -54.96 16 2 C 0.01 0.28 5.46 84.66 0.46 0.75 16 3 Si 0.96 43.55 29.54 68.60 2.03 45.57 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.54 -30.10 9.11 25.60 0.23 -29.87 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.04 2.12 4.86 29.85 0.15 2.27 16 10 C -0.08 -3.19 4.64 30.59 0.14 -3.04 16 11 C 0.09 2.93 2.43 44.17 0.11 3.04 16 12 H 0.12 3.23 7.68 -2.39 -0.02 3.21 16 13 N -0.82 -26.75 8.44 -171.81 -1.45 -28.20 16 14 C 0.50 15.06 7.09 87.66 0.62 15.68 16 15 O -0.58 -21.30 16.58 -3.01 -0.05 -21.35 16 16 N -0.61 -13.74 3.34 -812.59 -2.71 -16.45 16 17 C 0.09 1.32 6.40 86.91 0.56 1.87 16 18 C -0.11 -1.18 5.98 31.65 0.19 -0.99 16 19 C -0.12 -1.54 0.89 -52.17 -0.05 -1.58 16 20 C -0.12 -0.83 7.10 30.77 0.22 -0.61 16 21 C 0.23 3.35 3.18 31.26 0.10 3.45 16 22 F -0.16 -2.96 16.59 44.97 0.75 -2.22 16 23 F -0.17 -2.80 17.20 44.97 0.77 -2.03 16 24 C 0.25 4.07 2.96 30.77 0.09 4.17 16 25 F -0.18 -4.06 16.01 44.97 0.72 -3.34 16 26 F -0.15 -2.45 16.67 44.97 0.75 -1.70 16 27 C 0.13 2.52 5.80 86.26 0.50 3.02 16 28 H 0.26 14.75 8.31 -92.70 -0.77 13.98 16 29 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 30 H 0.00 0.25 7.75 -2.39 -0.02 0.23 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 2.43 6.59 -2.39 -0.02 2.42 16 33 H 0.34 11.74 8.58 -89.70 -0.77 10.97 16 34 H 0.35 9.61 9.06 -89.69 -0.81 8.79 16 35 H 0.09 1.63 6.05 -2.39 -0.01 1.62 16 36 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.14 0.61 7.98 -2.39 -0.02 0.59 16 39 H 0.17 0.14 8.03 -2.39 -0.02 0.12 16 40 H 0.14 0.56 8.02 -2.39 -0.02 0.54 16 41 H 0.09 1.67 7.68 -2.39 -0.02 1.65 16 42 H 0.06 1.57 7.17 -2.38 -0.02 1.55 16 Total: -1.00 -72.51 358.08 3.91 -68.60 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -0.49 Total: 17.93 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 3.32 Total: -1.85 kcal Atomic # 7 Polarization: -95.73 SS G_CDS: -3.88 Total: -99.61 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -0.05 Total: -21.35 kcal Atomic # 9 Polarization: -12.28 SS G_CDS: 2.99 Total: -9.29 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -72.51 3.91 -68.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263188906.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.645 kcal (2) G-P(sol) polarization free energy of solvation -72.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds