Wall clock time and date at job start Tue Mar 31 2020 20:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46847 * 269.99662 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99977 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 N 1.46502 * 114.17188 * 139.67018 * 15 14 13 17 17 C 1.34777 * 119.99942 * 111.15947 * 16 15 14 18 18 O 1.21281 * 120.00105 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99991 * 179.97438 * 17 16 15 20 20 N 1.46505 * 109.46970 * 179.97438 * 19 17 16 21 21 C 1.33870 * 122.76474 * 269.71084 * 20 19 17 22 22 O 1.21225 * 125.39614 * 359.97438 * 21 20 19 23 23 C 1.51318 * 109.20586 * 179.84436 * 21 20 19 24 24 C 1.54224 * 103.55494 * 0.38918 * 23 21 20 25 25 C 1.33878 * 122.75635 * 90.00587 * 20 19 17 26 26 O 1.21227 * 125.39852 * 359.97438 * 25 20 19 27 27 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 28 28 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 33 33 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 34 34 H 1.09003 * 114.17671 * 272.37856 * 15 14 13 35 35 H 0.96992 * 119.99938 * 291.16113 * 16 15 14 36 36 H 1.08998 * 109.47513 * 300.00707 * 19 17 16 37 37 H 1.09005 * 109.46616 * 60.00448 * 19 17 16 38 38 H 1.09000 * 110.79299 * 241.77974 * 23 21 20 39 39 H 1.08995 * 110.54828 * 118.87665 * 23 21 20 40 40 H 1.09001 * 110.60672 * 241.26222 * 24 23 21 41 41 H 1.09001 * 110.60753 * 118.29004 * 24 23 21 42 42 H 1.09005 * 113.47182 * 253.47069 * 27 13 12 43 43 H 1.08997 * 113.47905 * 23.93586 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 7 1.7167 -8.8212 -1.7334 17 6 2.4131 -9.7859 -2.3666 18 8 3.6116 -9.8752 -2.2035 19 6 1.7023 -10.7543 -3.2766 20 7 2.6723 -11.6968 -3.8398 21 6 3.3166 -11.4717 -4.9915 22 8 3.1823 -10.4909 -5.6911 23 6 4.2415 -12.6341 -5.2799 24 6 4.0100 -13.5847 -4.0877 25 6 2.9829 -12.8568 -3.2480 26 8 2.5157 -13.2600 -2.2045 27 6 1.5119 -7.2629 0.2349 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6209 -4.9225 0.8949 31 1 0.6128 -4.9187 -0.8850 32 1 1.6587 -6.2059 -2.0786 33 1 3.4443 -6.1531 -1.7540 34 1 3.3617 -8.2554 -0.4780 35 1 0.7582 -8.7501 -1.8636 36 1 0.9506 -11.3021 -2.7083 37 1 1.2184 -10.2053 -4.0845 38 1 5.2798 -12.3039 -5.3113 39 1 3.9658 -13.1191 -6.2163 40 1 4.9332 -13.7274 -3.5260 41 1 3.6166 -14.5416 -4.4307 42 1 1.6894 -7.6711 1.2299 43 1 0.4553 -7.2469 -0.0325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268482389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:03 Heat of formation + Delta-G solvation = -81.564304 kcal Electronic energy + Delta-G solvation = -28326.870709 eV Core-core repulsion = 23988.309597 eV Total energy + Delta-G solvation = -4338.561112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.39970 -40.64417 -39.14117 -38.99275 -37.71125 -36.25074 -34.35669 -33.96459 -33.80349 -31.26844 -30.15774 -28.37198 -26.66253 -25.95668 -25.47564 -23.67175 -22.86617 -21.47258 -20.51718 -19.74488 -19.26284 -18.14893 -17.94966 -17.77422 -16.94483 -16.85135 -16.47887 -16.12018 -15.51725 -15.29129 -15.18436 -14.69190 -14.64551 -14.63654 -14.37285 -14.28720 -13.99365 -13.74629 -13.32775 -13.26647 -12.94198 -12.84785 -12.59253 -12.28756 -11.89212 -11.64854 -11.52867 -11.25923 -11.15073 -11.06612 -10.90712 -10.68795 -10.50816 -10.38115 -10.20503 -9.96083 -9.49003 -9.29593 -8.87546 -8.22347 -7.95048 -6.40674 -3.81237 1.08370 1.81347 2.20299 2.23828 2.85767 3.18903 3.27313 3.33784 3.57110 3.70865 3.90381 3.91327 3.97878 4.19579 4.28337 4.34445 4.37396 4.52148 4.64354 4.76446 4.85904 4.92751 4.95231 5.07743 5.11055 5.14169 5.28398 5.29909 5.55229 5.62830 5.65348 5.80376 6.01918 6.17473 6.26952 6.28488 6.47405 6.84220 7.03928 7.12012 7.29440 7.56516 7.81511 8.07216 8.63266 9.19795 9.55472 10.08062 10.77235 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026784 B = 0.001808 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.151017 B =15482.004659 C =15940.539801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.446 3.554 11 O -0.573 6.573 12 C 0.011 3.989 13 N -0.434 5.434 14 C -0.008 4.008 15 C 0.118 3.882 16 N -0.713 5.713 17 C 0.505 3.495 18 O -0.527 6.527 19 C 0.078 3.922 20 N -0.560 5.560 21 C 0.531 3.469 22 O -0.476 6.476 23 C -0.154 4.154 24 C -0.154 4.154 25 C 0.532 3.468 26 O -0.480 6.480 27 C -0.013 4.013 28 H 0.271 0.729 29 H 0.391 0.609 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.403 0.597 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.187 -29.229 -9.970 30.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.204 5.204 10 C 0.231 3.769 11 O -0.456 6.456 12 C -0.121 4.121 13 N -0.156 5.156 14 C -0.138 4.138 15 C 0.013 3.987 16 N -0.365 5.365 17 C 0.289 3.711 18 O -0.402 6.402 19 C -0.048 4.048 20 N -0.303 5.303 21 C 0.320 3.680 22 O -0.347 6.347 23 C -0.194 4.194 24 C -0.193 4.193 25 C 0.321 3.679 26 O -0.351 6.351 27 C -0.143 4.143 28 H 0.081 0.919 29 H 0.224 0.776 30 H 0.108 0.892 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.148 0.852 35 H 0.237 0.763 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.112 0.888 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.585 -28.537 -9.207 29.991 hybrid contribution -1.641 1.016 -0.478 1.989 sum -1.056 -27.521 -9.685 29.194 Atomic orbital electron populations 1.69611 1.05917 1.28096 1.50893 1.25254 0.95652 0.99697 0.97421 0.85852 0.79257 0.80792 0.78369 1.20438 1.20932 1.19403 1.19702 0.93373 0.82211 1.47419 0.87946 1.41860 1.09105 1.04568 1.64893 1.19638 0.88403 0.84357 0.84541 1.90539 1.13637 1.86910 1.54533 1.22503 0.94520 0.92985 1.02102 1.68803 1.30530 0.99889 1.16387 1.24405 1.03786 0.93224 0.92402 1.22742 0.97967 0.87594 0.90379 1.45861 1.11626 1.31749 1.47234 1.20715 0.88162 0.81480 0.80751 1.90744 1.14420 1.72244 1.62770 1.21583 0.91787 0.92025 0.99364 1.46323 1.40195 1.20213 1.23547 1.20859 0.79978 0.88015 0.79180 1.90811 1.63128 1.30311 1.50454 1.22454 1.02088 0.94176 1.00654 1.22457 1.00421 1.00237 0.96234 1.20853 0.81834 0.80418 0.84783 1.90792 1.54048 1.69271 1.20990 1.24323 0.97335 0.92143 1.00473 0.91928 0.77576 0.89193 0.92201 0.91082 0.88788 0.85229 0.76283 0.85683 0.85654 0.85812 0.86008 0.85857 0.85998 0.88755 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.74 13.05 55.50 0.72 -24.01 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.36 29.55 -169.99 -5.02 16.33 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.06 7.16 -52.48 -0.38 2.69 16 9 N -0.57 -14.56 5.29 -10.96 -0.06 -14.62 16 10 C 0.45 10.78 7.85 -10.98 -0.09 10.70 16 11 O -0.57 -16.23 16.01 5.54 0.09 -16.14 16 12 C 0.01 0.19 5.30 -4.98 -0.03 0.17 16 13 N -0.43 -7.21 5.82 -246.13 -1.43 -8.64 16 14 C -0.01 -0.12 7.52 -7.56 -0.06 -0.18 16 15 C 0.12 1.44 4.59 -67.72 -0.31 1.13 16 16 N -0.71 -6.61 5.39 -53.54 -0.29 -6.90 16 17 C 0.50 5.57 7.90 -10.98 -0.09 5.49 16 18 O -0.53 -8.07 16.03 5.56 0.09 -7.99 16 19 C 0.08 0.59 6.04 -5.19 -0.03 0.56 16 20 N -0.56 -4.63 2.04 -116.62 -0.24 -4.87 16 21 C 0.53 4.39 8.08 -11.09 -0.09 4.30 16 22 O -0.48 -5.70 17.47 5.61 0.10 -5.60 16 23 C -0.15 -0.53 7.03 -26.94 -0.19 -0.72 16 24 C -0.15 -0.50 7.03 -26.94 -0.19 -0.69 16 25 C 0.53 4.21 8.08 -11.08 -0.09 4.12 16 26 O -0.48 -5.39 17.48 5.60 0.10 -5.29 16 27 C -0.01 -0.15 7.45 -7.55 -0.06 -0.20 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 29 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 30 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 31 H 0.06 0.92 7.30 -51.93 -0.38 0.54 16 32 H 0.07 0.95 7.42 -51.93 -0.39 0.56 16 33 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.13 1.83 7.46 -51.93 -0.39 1.45 16 35 H 0.40 2.34 8.75 -40.82 -0.36 1.98 16 36 H 0.13 0.67 7.83 -51.93 -0.41 0.26 16 37 H 0.13 0.73 7.82 -51.93 -0.41 0.32 16 38 H 0.12 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.12 0.12 8.14 -51.93 -0.42 -0.31 16 40 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.12 0.09 8.14 -51.93 -0.42 -0.33 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 0.65 7.90 -51.93 -0.41 0.24 16 LS Contribution 376.25 15.07 5.67 5.67 Total: -1.00 -40.08 376.25 -7.25 -47.33 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.52 Total: 8.15 kcal Atomic # 6 Polarization: 18.03 SS G_CDS: -1.45 Total: 16.57 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: -1.29 Total: -59.04 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: 0.37 Total: -35.02 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -40.08 -7.25 -47.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268482389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.235 kcal (2) G-P(sol) polarization free energy of solvation -40.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds