Wall clock time and date at job start Tue Mar 31 2020 20:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46847 * 269.99662 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99977 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47182 * 179.72734 * 12 10 9 14 14 C 1.47477 * 111.00081 * 265.96691 * 13 12 10 15 15 C 1.53503 * 87.93674 * 221.29832 * 14 13 12 16 16 N 1.46502 * 114.17188 * 139.67018 * 15 14 13 17 17 C 1.34777 * 119.99942 * 111.15947 * 16 15 14 18 18 O 1.21281 * 120.00105 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99991 * 179.97438 * 17 16 15 20 20 N 1.46505 * 109.46970 * 179.97438 * 19 17 16 21 21 C 1.33870 * 122.76474 * 269.71084 * 20 19 17 22 22 O 1.21225 * 125.39614 * 359.97438 * 21 20 19 23 23 C 1.51318 * 109.20586 * 179.84436 * 21 20 19 24 24 C 1.54224 * 103.55494 * 0.38918 * 23 21 20 25 25 C 1.33878 * 122.75635 * 90.00587 * 20 19 17 26 26 O 1.21227 * 125.39852 * 359.97438 * 25 20 19 27 27 C 1.47484 * 110.99756 * 170.00145 * 13 12 10 28 28 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 31 31 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 32 32 H 1.09000 * 113.48071 * 336.07220 * 14 13 12 33 33 H 1.09004 * 113.47566 * 106.53029 * 14 13 12 34 34 H 1.09003 * 114.17671 * 272.37856 * 15 14 13 35 35 H 0.96992 * 119.99938 * 291.16113 * 16 15 14 36 36 H 1.08998 * 109.47513 * 300.00707 * 19 17 16 37 37 H 1.09005 * 109.46616 * 60.00448 * 19 17 16 38 38 H 1.09000 * 110.79299 * 241.77974 * 23 21 20 39 39 H 1.08995 * 110.54828 * 118.87665 * 23 21 20 40 40 H 1.09001 * 110.60672 * 241.26222 * 24 23 21 41 41 H 1.09001 * 110.60753 * 118.29004 * 24 23 21 42 42 H 1.09005 * 113.47182 * 253.47069 * 27 13 12 43 43 H 1.08997 * 113.47905 * 23.93586 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 7 2.1981 -5.9795 -0.0045 14 6 2.4617 -6.4412 -1.3801 15 6 2.4076 -7.8801 -0.8483 16 7 1.7167 -8.8212 -1.7334 17 6 2.4131 -9.7859 -2.3666 18 8 3.6116 -9.8752 -2.2035 19 6 1.7023 -10.7543 -3.2766 20 7 2.6723 -11.6968 -3.8398 21 6 3.3166 -11.4717 -4.9915 22 8 3.1823 -10.4909 -5.6911 23 6 4.2415 -12.6341 -5.2799 24 6 4.0100 -13.5847 -4.0877 25 6 2.9829 -12.8568 -3.2480 26 8 2.5157 -13.2600 -2.2045 27 6 1.5119 -7.2629 0.2349 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3906 0.0016 30 1 0.6209 -4.9225 0.8949 31 1 0.6128 -4.9187 -0.8850 32 1 1.6587 -6.2059 -2.0786 33 1 3.4443 -6.1531 -1.7540 34 1 3.3617 -8.2554 -0.4780 35 1 0.7582 -8.7501 -1.8636 36 1 0.9506 -11.3021 -2.7083 37 1 1.2184 -10.2053 -4.0845 38 1 5.2798 -12.3039 -5.3113 39 1 3.9658 -13.1191 -6.2163 40 1 4.9332 -13.7274 -3.5260 41 1 3.6166 -14.5416 -4.4307 42 1 1.6894 -7.6711 1.2299 43 1 0.4553 -7.2469 -0.0325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268482389.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:02 Heat of formation + Delta-G solvation = -116.983638 kcal Electronic energy + Delta-G solvation = -28328.406607 eV Core-core repulsion = 23988.309597 eV Total energy + Delta-G solvation = -4340.097009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.98968 -41.73767 -40.28597 -39.68025 -39.47091 -36.93213 -35.99549 -35.27286 -34.40155 -33.31222 -31.41828 -29.15740 -27.25003 -27.11834 -27.00812 -25.14852 -23.34482 -22.38253 -21.50498 -21.06340 -20.43333 -19.93468 -18.87590 -18.52895 -17.89517 -17.59344 -17.54307 -17.35989 -16.63793 -16.59061 -16.36853 -15.95004 -15.81173 -15.66531 -15.29498 -15.27553 -14.93158 -14.86995 -14.47749 -14.30658 -13.86041 -13.75967 -13.53911 -13.52435 -13.41692 -13.04007 -12.79030 -12.47144 -12.39181 -12.14153 -12.11165 -11.91977 -11.81837 -11.69254 -11.52456 -11.13382 -10.78518 -10.42904 -10.24290 -10.03128 -9.82328 -8.48841 -5.97412 0.49149 1.22725 1.34118 1.35872 1.39564 1.52363 1.68414 2.03405 2.07063 2.28098 2.83425 3.16641 3.20010 3.25326 3.26189 3.46258 3.52846 3.62972 3.71589 3.99220 4.03290 4.09801 4.19484 4.21552 4.23839 4.28088 4.35238 4.50219 4.63729 4.73509 4.76814 4.83951 4.90417 4.92497 5.26323 5.28408 5.38919 5.72516 5.83221 6.03814 6.26999 6.31300 6.59075 6.69334 7.02299 7.11440 7.54502 8.11842 8.68486 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026784 B = 0.001808 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.151017 B =15482.004659 C =15940.539801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.268 1.268 6 H -0.276 1.276 7 C -0.335 4.335 8 H 0.074 0.926 9 N -0.574 5.574 10 C 0.438 3.562 11 O -0.623 6.623 12 C 0.026 3.974 13 N -0.475 5.475 14 C -0.011 4.011 15 C 0.131 3.869 16 N -0.695 5.695 17 C 0.498 3.502 18 O -0.577 6.577 19 C 0.076 3.924 20 N -0.567 5.567 21 C 0.522 3.478 22 O -0.523 6.523 23 C -0.142 4.142 24 C -0.141 4.141 25 C 0.524 3.476 26 O -0.520 6.520 27 C 0.005 3.995 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.423 0.577 36 H 0.149 0.851 37 H 0.143 0.857 38 H 0.135 0.865 39 H 0.155 0.845 40 H 0.136 0.864 41 H 0.156 0.844 42 H 0.103 0.897 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 -30.904 -10.711 32.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.192 1.192 6 H -0.201 1.201 7 C -0.464 4.464 8 H 0.092 0.908 9 N -0.212 5.212 10 C 0.226 3.774 11 O -0.509 6.509 12 C -0.106 4.106 13 N -0.198 5.198 14 C -0.142 4.142 15 C 0.025 3.975 16 N -0.349 5.349 17 C 0.285 3.715 18 O -0.456 6.456 19 C -0.049 4.049 20 N -0.310 5.310 21 C 0.314 3.686 22 O -0.397 6.397 23 C -0.181 4.181 24 C -0.180 4.180 25 C 0.316 3.684 26 O -0.394 6.394 27 C -0.124 4.124 28 H 0.088 0.912 29 H 0.231 0.769 30 H 0.134 0.866 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.262 0.738 36 H 0.167 0.833 37 H 0.161 0.839 38 H 0.153 0.847 39 H 0.172 0.828 40 H 0.154 0.846 41 H 0.173 0.827 42 H 0.122 0.878 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.087 -30.240 -9.954 31.855 hybrid contribution -1.137 1.516 -0.242 1.910 sum -2.225 -28.724 -10.197 30.561 Atomic orbital electron populations 1.69659 1.06675 1.29303 1.50291 1.26013 0.96603 1.02285 0.96284 0.84946 0.77856 0.76984 0.78657 1.19630 1.19243 1.20062 1.19625 0.92581 0.84174 1.50066 0.90756 1.41919 1.09300 1.04601 1.65354 1.20879 0.88265 0.86116 0.82175 1.90504 1.16209 1.87973 1.56219 1.22387 0.94047 0.89476 1.04686 1.68716 1.32073 1.01595 1.17424 1.24434 1.02451 0.94982 0.92309 1.22297 0.97745 0.86668 0.90812 1.45657 1.12517 1.30546 1.46136 1.21405 0.87746 0.81797 0.80587 1.90720 1.16706 1.73629 1.64511 1.21736 0.91862 0.91815 0.99477 1.46590 1.40236 1.20433 1.23694 1.21752 0.79906 0.88518 0.78453 1.90783 1.64696 1.32419 1.51777 1.22586 1.01313 0.92115 1.02121 1.22590 0.99404 1.00869 0.95136 1.21708 0.81922 0.80287 0.84489 1.90767 1.55693 1.70127 1.22798 1.24337 0.98786 0.88630 1.00638 0.91242 0.76855 0.86569 0.89224 0.89179 0.92601 0.87802 0.73813 0.83312 0.83882 0.84737 0.82776 0.84615 0.82651 0.87835 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.70 13.05 21.66 0.28 -49.41 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 3 Si 0.99 43.75 29.55 68.60 2.03 45.77 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.33 -19.49 9.68 84.04 0.81 -18.68 16 8 H 0.07 4.66 7.16 -2.91 -0.02 4.64 16 9 N -0.57 -29.94 5.29 -306.98 -1.62 -31.56 16 10 C 0.44 21.54 7.85 87.66 0.69 22.23 16 11 O -0.62 -36.74 16.01 -3.08 -0.05 -36.79 16 12 C 0.03 0.86 5.30 85.56 0.45 1.32 16 13 N -0.48 -15.47 5.82 -932.63 -5.43 -20.90 16 14 C -0.01 -0.34 7.52 83.57 0.63 0.29 16 15 C 0.13 3.13 4.59 45.44 0.21 3.34 16 16 N -0.70 -11.98 5.39 -441.69 -2.38 -14.36 16 17 C 0.50 10.88 7.90 87.66 0.69 11.57 16 18 O -0.58 -18.30 16.03 -3.03 -0.05 -18.35 16 19 C 0.08 1.07 6.04 85.63 0.52 1.59 16 20 N -0.57 -8.89 2.04 -760.70 -1.55 -10.45 16 21 C 0.52 8.18 8.08 87.99 0.71 8.89 16 22 O -0.52 -12.53 17.47 -2.86 -0.05 -12.58 16 23 C -0.14 -0.60 7.03 30.46 0.21 -0.39 16 24 C -0.14 -0.52 7.03 30.46 0.21 -0.30 16 25 C 0.52 7.67 8.08 87.99 0.71 8.38 16 26 O -0.52 -11.36 17.48 -2.87 -0.05 -11.41 16 27 C 0.00 0.10 7.45 83.57 0.62 0.73 16 28 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 30 H 0.12 3.30 8.08 -2.39 -0.02 3.28 16 31 H 0.09 2.48 7.30 -2.39 -0.02 2.46 16 32 H 0.09 2.28 7.42 -2.39 -0.02 2.27 16 33 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.10 3.08 7.46 -2.39 -0.02 3.06 16 35 H 0.42 3.72 8.75 -92.71 -0.81 2.91 16 36 H 0.15 1.34 7.83 -2.39 -0.02 1.32 16 37 H 0.14 1.48 7.82 -2.38 -0.02 1.46 16 38 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.15 -0.30 8.14 -2.39 -0.02 -0.32 16 40 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.16 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.11 1.48 7.90 -2.39 -0.02 1.47 16 Total: -1.00 -93.17 376.25 -2.39 -95.56 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -0.46 Total: 25.70 kcal Atomic # 6 Polarization: 31.84 SS G_CDS: 6.94 Total: 38.78 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -10.70 Total: -126.68 kcal Atomic # 8 Polarization: -78.94 SS G_CDS: -0.20 Total: -79.13 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -93.17 -2.39 -95.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268482389.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.426 kcal (2) G-P(sol) polarization free energy of solvation -93.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds