Wall clock time and date at job start Tue Mar 31 2020 20:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48496 * 109.47349 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47105 * 300.00513 * 3 2 1 6 6 H 1.48503 * 109.46951 * 60.00244 * 3 2 1 7 7 C 1.38809 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00788 * 163.08838 * 7 2 1 9 9 N 1.36936 * 119.99460 * 342.80484 * 7 2 1 10 10 C 1.47153 * 120.98594 * 333.91871 * 9 7 2 11 11 C 1.53292 * 108.38450 * 230.51258 * 10 9 7 12 12 O 1.42957 * 109.22418 * 307.69552 * 11 10 9 13 13 C 1.42969 * 114.16803 * 62.58576 * 12 11 10 14 14 H 1.09002 * 109.51221 * 57.38965 * 13 12 11 15 15 C 1.52994 * 109.51207 * 177.49573 * 13 12 11 16 16 N 1.46501 * 109.47227 * 299.99615 * 15 13 12 17 17 C 1.34774 * 119.99916 * 180.02562 * 16 15 13 18 18 O 1.21286 * 120.00276 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00258 * 179.97438 * 17 16 15 20 20 O 1.42895 * 109.47265 * 180.02562 * 19 17 16 21 21 C 1.35954 * 116.99497 * 180.02562 * 20 19 17 22 22 C 1.38707 * 120.03245 * 359.72477 * 21 20 19 23 23 C 1.38150 * 119.96648 * 179.74481 * 22 21 20 24 24 C 1.38458 * 120.03008 * 0.52864 * 23 22 21 25 25 F 1.35102 * 119.96660 * 179.74800 * 24 23 22 26 26 C 1.38445 * 120.06100 * 359.72407 * 24 23 22 27 27 C 1.38156 * 120.03071 * 0.02562 * 26 24 23 28 28 C 1.47153 * 120.97980 * 153.63896 * 9 7 2 29 29 H 0.97001 * 119.99904 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.68152 * 350.23461 * 10 9 7 31 31 H 1.09000 * 109.68372 * 110.75187 * 10 9 7 32 32 H 1.08998 * 109.51523 * 67.62141 * 11 10 9 33 33 H 1.09000 * 109.51172 * 187.77401 * 11 10 9 34 34 H 1.09001 * 109.47405 * 59.99629 * 15 13 12 35 35 H 1.09005 * 109.47026 * 179.97438 * 15 13 12 36 36 H 0.96993 * 119.99951 * 0.02562 * 16 15 13 37 37 H 1.09001 * 109.46803 * 299.99979 * 19 17 16 38 38 H 1.09005 * 109.47107 * 59.99405 * 19 17 16 39 39 H 1.07997 * 120.01499 * 359.97438 * 22 21 20 40 40 H 1.08002 * 119.98310 * 180.23201 * 23 22 21 41 41 H 1.08002 * 119.98877 * 179.97438 * 26 24 23 42 42 H 1.08002 * 120.01053 * 179.97438 * 27 26 24 43 43 H 1.09000 * 109.68024 * 249.21035 * 28 9 7 44 44 H 1.08995 * 109.68462 * 9.76105 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2726 9 7 1.3715 -2.3616 0.3495 10 6 0.2007 -2.3422 1.2408 11 6 0.4307 -3.3605 2.3633 12 8 0.7707 -4.6249 1.7895 13 6 1.9856 -4.6179 1.0357 14 1 2.8059 -4.2827 1.6704 15 6 2.2784 -6.0301 0.5253 16 7 2.4159 -6.9421 1.6635 17 6 2.6778 -8.2473 1.4534 18 8 2.8003 -8.6668 0.3220 19 6 2.8198 -9.1854 2.6242 20 8 3.0944 -10.5042 2.1474 21 6 3.2512 -11.4784 3.0827 22 6 3.1486 -11.1693 4.4310 23 6 3.3029 -12.1613 5.3800 24 6 3.5708 -13.4614 4.9862 25 9 3.7266 -14.4295 5.9156 26 6 3.6787 -13.7702 3.6410 27 6 3.5197 -12.7812 2.6896 28 6 1.8318 -3.6634 -0.1593 29 1 -0.4850 0.8401 0.0004 30 1 0.0806 -1.3464 1.6674 31 1 -0.6934 -2.6108 0.6783 32 1 1.2452 -3.0200 3.0026 33 1 -0.4792 -3.4621 2.9548 34 1 1.4585 -6.3639 -0.1108 35 1 3.2045 -6.0239 -0.0497 36 1 2.3184 -6.6066 2.5683 37 1 3.6397 -8.8513 3.2600 38 1 1.8937 -9.1919 3.1990 39 1 2.9444 -10.1544 4.7385 40 1 3.2193 -11.9216 6.4298 41 1 3.8881 -14.7846 3.3351 42 1 3.6043 -13.0224 1.6402 43 1 1.0992 -4.0634 -0.8603 44 1 2.7922 -3.5429 -0.6603 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270701008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:07 Heat of formation + Delta-G solvation = -106.613861 kcal Electronic energy + Delta-G solvation = -27938.046096 eV Core-core repulsion = 23578.478793 eV Total energy + Delta-G solvation = -4359.567304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.18950 -40.74765 -39.59708 -38.52007 -37.42648 -35.01418 -34.36565 -31.89577 -31.65825 -30.95409 -30.17441 -28.65571 -27.33317 -25.34345 -23.61550 -23.24416 -22.66769 -21.86429 -20.78238 -19.70958 -18.86947 -17.82648 -17.69205 -16.95882 -16.79076 -16.51181 -16.12714 -15.90938 -15.79229 -15.11811 -15.07571 -14.73015 -14.49737 -14.41216 -14.10540 -13.91927 -13.61636 -13.42878 -13.28482 -13.16362 -12.93747 -12.75341 -12.68484 -12.31103 -11.64249 -11.35487 -11.34022 -11.19471 -10.93158 -10.77649 -10.49205 -10.31466 -10.07881 -10.02143 -9.73083 -9.66135 -9.17637 -9.13084 -8.61196 -8.54459 -6.83027 -5.91039 -3.34990 0.68656 0.76962 2.24104 2.41307 3.11695 3.29046 3.36648 3.38700 3.39992 3.88890 4.10833 4.19107 4.29769 4.36972 4.44386 4.58388 4.65448 4.68800 4.85919 5.03942 5.10672 5.26417 5.37503 5.40631 5.42895 5.64787 5.69614 5.70507 5.74602 5.75356 5.93547 6.05878 6.18428 6.21991 6.28503 6.36040 6.40674 6.67541 6.84610 7.02210 7.34951 7.44413 7.64631 7.75564 8.04204 8.26374 9.04437 9.67102 10.23555 11.17040 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032875 B = 0.001659 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.516175 B =16873.029470 C =17183.937960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.257 4.257 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.138 3.862 11 C 0.040 3.960 12 O -0.391 6.391 13 C 0.064 3.936 14 H 0.060 0.940 15 C 0.132 3.868 16 N -0.714 5.714 17 C 0.513 3.487 18 O -0.521 6.521 19 C 0.040 3.960 20 O -0.285 6.285 21 C 0.124 3.876 22 C -0.183 4.183 23 C -0.111 4.111 24 C 0.056 3.944 25 F -0.142 7.142 26 C -0.112 4.112 27 C -0.120 4.120 28 C 0.121 3.879 29 H 0.255 0.745 30 H 0.094 0.906 31 H 0.029 0.971 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.405 0.595 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.031 0.969 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 -22.218 11.552 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.386 4.386 8 H 0.088 0.912 9 N -0.317 5.317 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.310 6.310 13 C 0.004 3.996 14 H 0.078 0.922 15 C 0.009 3.991 16 N -0.367 5.367 17 C 0.297 3.703 18 O -0.396 6.396 19 C -0.039 4.039 20 O -0.197 6.197 21 C 0.078 3.922 22 C -0.202 4.202 23 C -0.130 4.130 24 C 0.037 3.963 25 F -0.121 7.121 26 C -0.131 4.131 27 C -0.139 4.139 28 C -0.006 4.006 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.240 0.760 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.049 0.951 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.783 -22.553 10.534 25.555 hybrid contribution 0.363 1.360 0.848 1.644 sum 6.146 -21.193 11.382 24.828 Atomic orbital electron populations 1.70041 1.05297 1.25638 1.53638 1.25055 0.95350 0.98534 1.00680 0.86183 0.79318 0.83651 0.77380 1.20189 1.21580 1.21469 1.19236 0.92720 0.84458 1.42154 0.91248 1.44091 1.33819 1.00998 1.52825 1.21449 0.89171 0.98384 0.89715 1.23326 0.99032 0.84777 0.96621 1.87770 1.41371 1.32598 1.69259 1.22907 0.87584 0.93653 0.95414 0.92198 1.21488 1.02354 0.87197 0.88091 1.45751 1.72236 1.07467 1.11273 1.19900 0.77731 0.82715 0.89960 1.90766 1.48855 1.76286 1.23709 1.22543 1.03185 0.81827 0.96366 1.86196 1.85498 1.15785 1.32194 1.19091 0.96258 0.89089 0.87780 1.21165 1.06817 1.00696 0.91544 1.20950 1.00158 0.91056 1.00825 1.17596 1.06379 0.86024 0.86320 1.91497 1.93537 1.62083 1.64961 1.20981 1.00807 1.00561 0.90709 1.20328 1.03224 0.89383 1.00918 1.21527 0.99047 0.87239 0.92786 0.93492 0.88746 0.95332 0.94055 0.89997 0.90448 0.89898 0.76037 0.88755 0.88625 0.84251 0.84330 0.83934 0.83800 0.95125 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.38 11.15 55.49 0.62 -24.76 16 2 C 0.00 0.07 4.94 -17.43 -0.09 -0.02 16 3 Si 0.91 20.93 29.59 -169.99 -5.03 15.90 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.26 -6.77 9.65 -15.06 -0.15 -6.91 16 8 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -14.28 3.04 -171.58 -0.52 -14.80 16 10 C 0.14 3.16 5.44 -3.53 -0.02 3.14 16 11 C 0.04 0.72 6.98 37.31 0.26 0.98 16 12 O -0.39 -6.70 10.13 -35.23 -0.36 -7.06 16 13 C 0.06 1.03 2.88 -26.36 -0.08 0.96 16 14 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 15 C 0.13 1.82 5.37 -4.04 -0.02 1.79 16 16 N -0.71 -8.11 5.45 -60.29 -0.33 -8.43 16 17 C 0.51 6.28 7.91 -10.99 -0.09 6.19 16 18 O -0.52 -8.76 16.50 -14.36 -0.24 -9.00 16 19 C 0.04 0.33 5.22 36.01 0.19 0.52 16 20 O -0.28 -3.10 9.67 -39.51 -0.38 -3.48 16 21 C 0.12 1.11 6.69 -39.24 -0.26 0.85 16 22 C -0.18 -1.31 9.04 -39.44 -0.36 -1.67 16 23 C -0.11 -0.79 10.02 -39.53 -0.40 -1.19 16 24 C 0.06 0.46 7.30 -39.42 -0.29 0.17 16 25 F -0.14 -1.28 17.27 2.25 0.04 -1.24 16 26 C -0.11 -0.82 10.02 -39.54 -0.40 -1.22 16 27 C -0.12 -0.98 9.98 -39.44 -0.39 -1.37 16 28 C 0.12 2.40 6.05 -3.31 -0.02 2.38 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 30 H 0.09 2.38 6.14 -51.93 -0.32 2.06 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.41 3.67 8.35 -40.82 -0.34 3.33 16 37 H 0.09 0.53 7.65 -51.93 -0.40 0.13 16 38 H 0.10 0.58 7.67 -51.93 -0.40 0.18 16 39 H 0.14 0.66 6.30 -52.49 -0.33 0.33 16 40 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -32.86 373.03 -8.65 -41.51 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.98 Total: 1.12 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -2.10 Total: 4.62 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.23 Total: -47.99 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.98 Total: -19.54 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.86 -8.65 -41.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270701008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.100 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds