Wall clock time and date at job start Tue Mar 31 2020 20:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00035 * 2 1 4 4 H 1.48496 * 109.47349 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47105 * 300.00513 * 3 2 1 6 6 H 1.48503 * 109.46951 * 60.00244 * 3 2 1 7 7 C 1.38809 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00788 * 163.08838 * 7 2 1 9 9 N 1.36936 * 119.99460 * 342.80484 * 7 2 1 10 10 C 1.47153 * 120.98594 * 333.91871 * 9 7 2 11 11 C 1.53292 * 108.38450 * 230.51258 * 10 9 7 12 12 O 1.42957 * 109.22418 * 307.69552 * 11 10 9 13 13 C 1.42969 * 114.16803 * 62.58576 * 12 11 10 14 14 H 1.09002 * 109.51221 * 57.38965 * 13 12 11 15 15 C 1.52994 * 109.51207 * 177.49573 * 13 12 11 16 16 N 1.46501 * 109.47227 * 299.99615 * 15 13 12 17 17 C 1.34774 * 119.99916 * 180.02562 * 16 15 13 18 18 O 1.21286 * 120.00276 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00258 * 179.97438 * 17 16 15 20 20 O 1.42895 * 109.47265 * 180.02562 * 19 17 16 21 21 C 1.35954 * 116.99497 * 180.02562 * 20 19 17 22 22 C 1.38707 * 120.03245 * 359.72477 * 21 20 19 23 23 C 1.38150 * 119.96648 * 179.74481 * 22 21 20 24 24 C 1.38458 * 120.03008 * 0.52864 * 23 22 21 25 25 F 1.35102 * 119.96660 * 179.74800 * 24 23 22 26 26 C 1.38445 * 120.06100 * 359.72407 * 24 23 22 27 27 C 1.38156 * 120.03071 * 0.02562 * 26 24 23 28 28 C 1.47153 * 120.97980 * 153.63896 * 9 7 2 29 29 H 0.97001 * 119.99904 * 359.97438 * 1 2 3 30 30 H 1.08994 * 109.68152 * 350.23461 * 10 9 7 31 31 H 1.09000 * 109.68372 * 110.75187 * 10 9 7 32 32 H 1.08998 * 109.51523 * 67.62141 * 11 10 9 33 33 H 1.09000 * 109.51172 * 187.77401 * 11 10 9 34 34 H 1.09001 * 109.47405 * 59.99629 * 15 13 12 35 35 H 1.09005 * 109.47026 * 179.97438 * 15 13 12 36 36 H 0.96993 * 119.99951 * 0.02562 * 16 15 13 37 37 H 1.09001 * 109.46803 * 299.99979 * 19 17 16 38 38 H 1.09005 * 109.47107 * 59.99405 * 19 17 16 39 39 H 1.07997 * 120.01499 * 359.97438 * 22 21 20 40 40 H 1.08002 * 119.98310 * 180.23201 * 23 22 21 41 41 H 1.08002 * 119.98877 * 179.97438 * 26 24 23 42 42 H 1.08002 * 120.01053 * 179.97438 * 27 26 24 43 43 H 1.09000 * 109.68024 * 249.21035 * 28 9 7 44 44 H 1.08995 * 109.68462 * 9.76105 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0552 -1.2223 -0.2726 9 7 1.3715 -2.3616 0.3495 10 6 0.2007 -2.3422 1.2408 11 6 0.4307 -3.3605 2.3633 12 8 0.7707 -4.6249 1.7895 13 6 1.9856 -4.6179 1.0357 14 1 2.8059 -4.2827 1.6704 15 6 2.2784 -6.0301 0.5253 16 7 2.4159 -6.9421 1.6635 17 6 2.6778 -8.2473 1.4534 18 8 2.8003 -8.6668 0.3220 19 6 2.8198 -9.1854 2.6242 20 8 3.0944 -10.5042 2.1474 21 6 3.2512 -11.4784 3.0827 22 6 3.1486 -11.1693 4.4310 23 6 3.3029 -12.1613 5.3800 24 6 3.5708 -13.4614 4.9862 25 9 3.7266 -14.4295 5.9156 26 6 3.6787 -13.7702 3.6410 27 6 3.5197 -12.7812 2.6896 28 6 1.8318 -3.6634 -0.1593 29 1 -0.4850 0.8401 0.0004 30 1 0.0806 -1.3464 1.6674 31 1 -0.6934 -2.6108 0.6783 32 1 1.2452 -3.0200 3.0026 33 1 -0.4792 -3.4621 2.9548 34 1 1.4585 -6.3639 -0.1108 35 1 3.2045 -6.0239 -0.0497 36 1 2.3184 -6.6066 2.5683 37 1 3.6397 -8.8513 3.2600 38 1 1.8937 -9.1919 3.1990 39 1 2.9444 -10.1544 4.7385 40 1 3.2193 -11.9216 6.4298 41 1 3.8881 -14.7846 3.3351 42 1 3.6043 -13.0224 1.6402 43 1 1.0992 -4.0634 -0.8603 44 1 2.7922 -3.5429 -0.6603 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270701008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:06 Heat of formation + Delta-G solvation = -128.121234 kcal Electronic energy + Delta-G solvation = -27938.978726 eV Core-core repulsion = 23578.478793 eV Total energy + Delta-G solvation = -4360.499933 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.81500 -41.46534 -40.58604 -39.86938 -38.09655 -36.51259 -35.77537 -33.40022 -32.58490 -32.23516 -30.91697 -29.64414 -28.77315 -26.79813 -24.96236 -24.21002 -23.51134 -23.04274 -21.85463 -21.19143 -19.47267 -18.94631 -18.48991 -18.36135 -17.63362 -17.30449 -17.29046 -16.99763 -16.74697 -16.51457 -16.15142 -15.68563 -15.62803 -15.50511 -15.43368 -15.00920 -14.77638 -14.60483 -14.49420 -14.17395 -13.98089 -13.83775 -13.33320 -13.23770 -13.20489 -13.01280 -12.71515 -12.49851 -12.16434 -12.05588 -11.94282 -11.89903 -11.86948 -11.34247 -10.99830 -10.79731 -10.54489 -10.19155 -10.17401 -9.14727 -8.75805 -7.91879 -5.39203 0.16032 0.18662 1.45628 1.46844 1.48665 1.51330 1.58485 2.45650 2.56093 2.61100 2.79574 3.23405 3.33268 3.48630 3.55488 3.76961 3.82181 3.99142 4.02484 4.07237 4.13652 4.19015 4.25823 4.33109 4.49144 4.52884 4.57539 4.64009 4.73153 4.78427 4.91152 4.91713 5.06967 5.11872 5.14911 5.20399 5.24978 5.31250 5.56278 5.61990 5.67008 6.24006 6.25455 6.33290 6.50001 7.05978 7.14901 7.74214 8.27268 9.14046 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032875 B = 0.001659 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.516175 B =16873.029470 C =17183.937960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.288 1.288 7 C -0.265 4.265 8 H 0.073 0.927 9 N -0.612 5.612 10 C 0.141 3.859 11 C 0.056 3.944 12 O -0.388 6.388 13 C 0.080 3.920 14 H 0.075 0.925 15 C 0.142 3.858 16 N -0.703 5.703 17 C 0.512 3.488 18 O -0.574 6.574 19 C 0.042 3.958 20 O -0.314 6.314 21 C 0.108 3.892 22 C -0.178 4.178 23 C -0.111 4.111 24 C 0.039 3.961 25 F -0.150 7.150 26 C -0.112 4.112 27 C -0.133 4.133 28 C 0.114 3.886 29 H 0.251 0.749 30 H 0.067 0.933 31 H -0.003 1.003 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.420 0.580 37 H 0.130 0.870 38 H 0.126 0.874 39 H 0.168 0.832 40 H 0.159 0.841 41 H 0.158 0.842 42 H 0.145 0.855 43 H 0.016 0.984 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.065 -22.842 13.809 27.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.015 3.985 11 C -0.022 4.022 12 O -0.307 6.307 13 C 0.021 3.979 14 H 0.093 0.907 15 C 0.017 3.983 16 N -0.356 5.356 17 C 0.298 3.702 18 O -0.453 6.453 19 C -0.036 4.036 20 O -0.227 6.227 21 C 0.063 3.937 22 C -0.197 4.197 23 C -0.130 4.130 24 C 0.020 3.980 25 F -0.129 7.129 26 C -0.131 4.131 27 C -0.152 4.152 28 C -0.012 4.012 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.015 0.985 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.257 0.743 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.185 0.815 40 H 0.177 0.823 41 H 0.176 0.824 42 H 0.163 0.837 43 H 0.034 0.966 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.969 -23.200 12.835 27.415 hybrid contribution -0.009 1.503 0.089 1.505 sum 6.961 -21.697 12.924 26.197 Atomic orbital electron populations 1.70196 1.06747 1.25993 1.55277 1.25818 0.96070 1.01619 1.01082 0.85169 0.78664 0.79586 0.76772 1.18883 1.22214 1.21421 1.19590 0.93084 0.85573 1.41217 0.90891 1.44370 1.33902 1.01870 1.53540 1.21337 0.87880 0.98568 0.90711 1.23142 1.00870 0.83457 0.94714 1.87787 1.41932 1.31862 1.69111 1.22724 0.87597 0.93940 0.93669 0.90749 1.21212 1.02067 0.86291 0.88712 1.45575 1.71651 1.07122 1.11276 1.20597 0.76197 0.82988 0.90413 1.90748 1.51273 1.77169 1.26146 1.22679 1.06062 0.80240 0.94588 1.86145 1.86059 1.16864 1.33674 1.19284 0.97158 0.88880 0.88394 1.21428 1.05722 1.02008 0.90500 1.21225 0.99226 0.90514 1.01995 1.17870 1.07166 0.86515 0.86483 1.91476 1.93698 1.62500 1.65217 1.21141 1.00266 1.01212 0.90448 1.20480 1.03716 0.89720 1.01287 1.21707 0.98742 0.86348 0.94402 0.93958 0.91507 0.98496 0.92779 0.87247 0.92085 0.89261 0.74274 0.85247 0.85628 0.81456 0.82300 0.82426 0.83699 0.96593 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.00 11.15 21.65 0.24 -53.76 16 2 C -0.05 -2.73 4.94 84.86 0.42 -2.31 16 3 Si 0.97 43.26 29.59 68.60 2.03 45.29 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.26 -14.00 9.65 84.03 0.81 -13.19 16 8 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 9 N -0.61 -29.57 3.04 -696.74 -2.12 -31.69 16 10 C 0.14 6.49 5.44 86.35 0.47 6.96 16 11 C 0.06 1.88 6.98 72.08 0.50 2.39 16 12 O -0.39 -12.40 10.13 -148.98 -1.51 -13.91 16 13 C 0.08 2.42 2.88 30.83 0.09 2.51 16 14 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 15 C 0.14 3.67 5.37 86.38 0.46 4.13 16 16 N -0.70 -14.09 5.45 -463.06 -2.52 -16.61 16 17 C 0.51 11.51 7.91 87.66 0.69 12.20 16 18 O -0.57 -19.09 16.50 15.99 0.26 -18.82 16 19 C 0.04 0.57 5.22 71.24 0.37 0.94 16 20 O -0.31 -6.32 9.67 -73.99 -0.72 -7.03 16 21 C 0.11 1.75 6.69 22.49 0.15 1.90 16 22 C -0.18 -1.99 9.04 22.36 0.20 -1.79 16 23 C -0.11 -1.29 10.02 22.30 0.22 -1.07 16 24 C 0.04 0.58 7.30 22.37 0.16 0.74 16 25 F -0.15 -2.53 17.27 44.97 0.78 -1.75 16 26 C -0.11 -1.53 10.02 22.30 0.22 -1.31 16 27 C -0.13 -2.07 9.98 22.36 0.22 -1.85 16 28 C 0.11 4.49 6.05 86.50 0.52 5.02 16 29 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 30 H 0.07 3.44 6.14 -2.39 -0.01 3.43 16 31 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 36 H 0.42 5.99 8.35 -92.71 -0.77 5.21 16 37 H 0.13 0.85 7.65 -2.39 -0.02 0.83 16 38 H 0.13 0.96 7.67 -2.38 -0.02 0.94 16 39 H 0.17 0.80 6.30 -2.91 -0.02 0.79 16 40 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 41 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 43 H 0.02 0.67 8.14 -2.39 -0.02 0.66 16 44 H 0.07 2.68 7.96 -2.39 -0.02 2.66 16 Total: -1.00 -73.48 373.03 2.23 -71.25 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.26 Total: 11.77 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 5.53 Total: 15.28 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -4.40 Total: -102.06 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -1.96 Total: -39.77 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.78 Total: -1.75 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -73.48 2.23 -71.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270701008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.872 kcal (2) G-P(sol) polarization free energy of solvation -73.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds