Wall clock time and date at job start Tue Mar 31 2020 20:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99669 * 2 1 4 4 H 1.48498 * 109.47705 * 264.53628 * 3 2 1 5 5 H 1.48502 * 109.47421 * 24.54302 * 3 2 1 6 6 H 1.48501 * 109.46786 * 144.53781 * 3 2 1 7 7 C 1.38812 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99915 * 337.63043 * 7 2 1 9 9 N 1.36937 * 120.00145 * 157.62855 * 7 2 1 10 10 C 1.47427 * 125.64633 * 341.48363 * 9 7 2 11 11 C 1.54916 * 104.82865 * 204.16136 * 10 9 7 12 12 C 1.55155 * 101.58150 * 322.99151 * 11 10 9 13 13 O 1.42898 * 110.87099 * 277.06793 * 12 11 10 14 14 C 1.52996 * 110.72058 * 153.86405 * 12 11 10 15 15 N 1.46500 * 109.47426 * 190.01948 * 14 12 11 16 16 C 1.34776 * 120.00225 * 179.97438 * 15 14 12 17 17 O 1.21277 * 119.99830 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99918 * 180.02562 * 16 15 14 19 19 O 1.42899 * 109.46853 * 180.02562 * 18 16 15 20 20 C 1.35961 * 117.00010 * 180.02562 * 19 18 16 21 21 C 1.38663 * 120.05974 * 359.71891 * 20 19 18 22 22 C 1.38178 * 119.96658 * 180.27721 * 21 20 19 23 23 C 1.38254 * 120.09947 * 0.02562 * 22 21 20 24 24 C 1.38257 * 120.12450 * 0.02562 * 23 22 21 25 25 C 1.38330 * 120.03278 * 0.02562 * 24 23 22 26 26 F 1.35092 * 120.05215 * 180.02562 * 25 24 23 27 27 C 1.47021 * 125.64705 * 161.51950 * 9 7 2 28 28 H 0.96996 * 120.00322 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.36754 * 322.99817 * 10 9 7 30 30 H 1.08997 * 110.36403 * 85.32548 * 10 9 7 31 31 H 1.08991 * 111.00060 * 204.91460 * 11 10 9 32 32 H 1.08999 * 111.00040 * 81.06129 * 11 10 9 33 33 H 0.96706 * 113.99867 * 177.45433 * 13 12 11 34 34 H 1.09003 * 109.46858 * 70.02526 * 14 12 11 35 35 H 1.08994 * 109.47446 * 310.02770 * 14 12 11 36 36 H 0.97005 * 119.99550 * 0.02562 * 15 14 12 37 37 H 1.09003 * 109.46867 * 60.00585 * 18 16 15 38 38 H 1.09000 * 109.47187 * 300.00137 * 18 16 15 39 39 H 1.08002 * 120.01556 * 0.25992 * 21 20 19 40 40 H 1.08008 * 119.95002 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.93952 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.98469 * 180.02562 * 24 23 22 43 43 H 1.09005 * 109.88167 * 59.49261 * 27 9 7 44 44 H 1.08996 * 110.01399 * 298.39692 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6131 1.9799 -1.3936 5 1 1.3946 2.6832 0.5816 6 1 3.4852 1.4762 0.8123 7 6 2.0103 -1.2021 -0.0005 8 1 1.5313 -2.1024 0.3550 9 7 3.3024 -1.2465 -0.4519 10 6 3.9506 -0.2319 -1.3027 11 6 5.0954 -0.9894 -2.0208 12 6 5.5799 -1.9522 -0.9048 13 8 6.4903 -1.2923 -0.0230 14 6 6.2244 -3.2011 -1.5096 15 7 6.4537 -4.1918 -0.4549 16 6 7.0155 -5.3792 -0.7563 17 8 7.3318 -5.6274 -1.9005 18 6 7.2508 -6.3984 0.3285 19 8 7.8529 -7.5648 -0.2364 20 6 8.1326 -8.5884 0.6137 21 6 7.8392 -8.4699 1.9638 22 6 8.1296 -9.5090 2.8270 23 6 8.7129 -10.6669 2.3468 24 6 9.0081 -10.7888 1.0016 25 6 8.7206 -9.7514 0.1329 26 9 9.0084 -9.8704 -1.1817 27 6 4.2726 -2.3143 -0.1690 28 1 -0.4850 0.8400 -0.0004 29 1 3.2414 0.1621 -2.0306 30 1 4.3548 0.5743 -0.6905 31 1 5.8898 -0.3052 -2.3187 32 1 4.7179 -1.5449 -2.8793 33 1 6.7915 -1.8411 0.7142 34 1 7.1758 -2.9328 -1.9689 35 1 5.5618 -3.6220 -2.2657 36 1 6.2004 -3.9934 0.4602 37 1 6.2993 -6.6664 0.7877 38 1 7.9137 -5.9778 1.0847 39 1 7.3842 -7.5657 2.3404 40 1 7.9013 -9.4163 3.8786 41 1 8.9384 -11.4777 3.0237 42 1 9.4633 -11.6945 0.6288 43 1 3.8924 -3.2676 -0.5362 44 1 4.4561 -2.3770 0.9036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271219419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:48 Heat of formation + Delta-G solvation = -100.706207 kcal Electronic energy + Delta-G solvation = -28652.555979 eV Core-core repulsion = 24293.244851 eV Total energy + Delta-G solvation = -4359.311129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.05517 -40.76402 -39.87988 -38.78423 -37.64424 -35.48223 -34.45185 -32.31846 -31.20075 -30.98347 -30.19516 -29.20724 -28.04078 -25.98159 -23.72821 -23.09555 -22.80370 -21.38112 -20.57303 -20.14201 -19.00653 -18.09247 -17.44699 -17.12552 -16.94163 -16.81669 -16.24146 -15.92171 -15.78841 -15.32410 -15.23363 -14.99764 -14.81692 -14.44544 -14.31236 -14.07257 -13.61977 -13.42661 -13.16614 -13.07733 -12.91603 -12.54201 -12.19640 -12.17600 -11.95364 -11.72294 -11.65467 -11.59652 -11.25674 -11.07504 -10.85802 -10.27556 -10.12829 -10.03828 -9.79798 -9.48637 -9.42132 -9.34562 -8.75235 -8.65612 -7.12885 -6.00504 -3.32273 0.65812 0.78750 2.09853 2.29061 3.11467 3.20712 3.32279 3.46256 3.50080 3.83245 4.13634 4.18187 4.29748 4.40948 4.48916 4.50213 4.54985 4.58909 4.73556 4.76665 4.87500 4.99497 5.00844 5.06383 5.35277 5.47495 5.54640 5.57742 5.68923 5.70580 5.78607 5.90737 5.97239 6.05617 6.12355 6.15534 6.26835 6.31432 6.56530 6.68596 6.76948 7.12788 7.61081 7.67053 7.88873 8.24185 8.75165 9.61949 10.08945 11.15124 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021605 B = 0.002110 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.678339 B =13265.464383 C =13865.889541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.302 1.302 6 H -0.275 1.275 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.604 5.604 10 C 0.113 3.887 11 C -0.114 4.114 12 C 0.104 3.896 13 O -0.544 6.544 14 C 0.107 3.893 15 N -0.723 5.723 16 C 0.516 3.484 17 O -0.513 6.513 18 C 0.039 3.961 19 O -0.281 6.281 20 C 0.098 3.902 21 C -0.184 4.184 22 C -0.089 4.089 23 C -0.130 4.130 24 C -0.117 4.117 25 C 0.072 3.928 26 F -0.129 7.129 27 C 0.114 3.886 28 H 0.264 0.736 29 H 0.062 0.938 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.369 0.631 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.402 0.598 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.042 0.958 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.303 -18.152 5.994 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.201 1.201 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.331 5.331 10 C -0.012 4.012 11 C -0.153 4.153 12 C 0.062 3.938 13 O -0.348 6.348 14 C -0.017 4.017 15 N -0.378 5.378 16 C 0.301 3.699 17 O -0.387 6.387 18 C -0.040 4.040 19 O -0.193 6.193 20 C 0.051 3.949 21 C -0.203 4.203 22 C -0.107 4.107 23 C -0.148 4.148 24 C -0.135 4.135 25 C 0.052 3.948 26 F -0.108 7.108 27 C -0.012 4.012 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.215 0.785 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.236 0.764 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.161 0.839 43 H 0.059 0.941 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 19.221 -17.730 4.489 26.532 hybrid contribution 0.276 0.705 0.994 1.249 sum 19.497 -17.026 5.483 26.459 Atomic orbital electron populations 1.69839 1.05556 1.26725 1.52855 1.24996 0.95169 0.97495 0.99871 0.86976 0.79190 0.84520 0.77950 1.21126 1.23009 1.20053 1.18600 0.84131 0.95469 1.39138 0.89074 1.44677 1.09576 1.21982 1.56882 1.21983 0.93195 0.92670 0.93340 1.22754 0.98661 0.97996 0.95848 1.22530 0.88706 0.90855 0.91674 1.86620 1.64133 1.43144 1.40937 1.22102 1.01807 0.87446 0.90350 1.45796 1.63471 1.15833 1.12688 1.19888 0.78228 0.82321 0.89504 1.90784 1.49276 1.77607 1.21044 1.22557 1.00090 0.85431 0.95883 1.86230 1.75971 1.23012 1.34130 1.19091 0.97784 0.88140 0.89891 1.21228 1.05889 1.01823 0.91360 1.21053 0.97015 0.92590 1.00017 1.20968 1.00624 0.98648 0.94569 1.21068 1.01101 0.97924 0.93455 1.17024 1.04637 0.93916 0.79178 1.91535 1.91451 1.96116 1.31681 1.21995 0.88634 0.93548 0.97009 0.92610 0.91979 0.94954 0.90233 0.89446 0.78474 0.90240 0.89780 0.76382 0.88345 0.88550 0.84255 0.84808 0.84730 0.83945 0.94055 0.94897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.60 13.97 55.49 0.78 -26.82 16 2 C 0.02 0.68 5.43 -17.43 -0.09 0.59 16 3 Si 0.88 22.46 24.27 -169.99 -4.13 18.34 16 4 H -0.28 -6.95 6.49 56.52 0.37 -6.58 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.27 -6.98 6.66 56.52 0.38 -6.60 16 7 C -0.25 -6.83 10.57 -15.06 -0.16 -6.99 16 8 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 9 N -0.60 -14.08 3.21 -170.07 -0.55 -14.63 16 10 C 0.11 2.42 4.69 -2.52 -0.01 2.40 16 11 C -0.11 -1.85 6.26 -24.58 -0.15 -2.00 16 12 C 0.10 1.51 0.93 -88.79 -0.08 1.43 16 13 O -0.54 -7.64 13.10 -35.23 -0.46 -8.10 16 14 C 0.11 1.32 4.80 -4.04 -0.02 1.30 16 15 N -0.72 -7.27 5.13 -60.30 -0.31 -7.58 16 16 C 0.52 6.09 7.91 -10.99 -0.09 6.00 16 17 O -0.51 -8.57 16.50 -14.35 -0.24 -8.81 16 18 C 0.04 0.33 5.22 36.01 0.19 0.52 16 19 O -0.28 -3.39 9.54 -39.53 -0.38 -3.77 16 20 C 0.10 0.99 6.69 -39.18 -0.26 0.72 16 21 C -0.18 -1.29 9.04 -39.45 -0.36 -1.64 16 22 C -0.09 -0.50 10.04 -39.60 -0.40 -0.90 16 23 C -0.13 -0.73 10.04 -39.57 -0.40 -1.13 16 24 C -0.12 -0.85 10.02 -39.54 -0.40 -1.25 16 25 C 0.07 0.75 7.31 -39.30 -0.29 0.47 16 26 F -0.13 -1.64 17.11 2.25 0.04 -1.60 16 27 C 0.11 2.02 5.76 -3.06 -0.02 2.00 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.06 1.41 6.63 -51.93 -0.34 1.06 16 30 H 0.03 0.74 5.58 -51.93 -0.29 0.45 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.30 7.96 -51.93 -0.41 0.89 16 33 H 0.37 3.55 8.44 45.56 0.38 3.93 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 36 H 0.40 2.93 7.47 -40.82 -0.30 2.63 16 37 H 0.10 0.59 7.67 -51.93 -0.40 0.19 16 38 H 0.10 0.50 7.66 -51.93 -0.40 0.10 16 39 H 0.14 0.63 6.30 -52.49 -0.33 0.30 16 40 H 0.13 0.43 8.06 -52.48 -0.42 0.00 16 41 H 0.13 0.42 8.06 -52.48 -0.42 -0.01 16 42 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.04 0.72 7.82 -51.93 -0.41 0.32 16 44 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 LS Contribution 366.24 15.07 5.52 5.52 Total: -1.00 -37.27 366.24 -7.33 -44.60 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.07 Total: 1.34 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.54 Total: 1.52 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.08 Total: -49.03 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -1.08 Total: -20.68 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.13 Total: 18.34 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -37.27 -7.33 -44.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271219419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.110 kcal (2) G-P(sol) polarization free energy of solvation -37.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds