Wall clock time and date at job start Tue Mar 31 2020 20:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99669 * 2 1 4 4 H 1.48498 * 109.47705 * 264.53628 * 3 2 1 5 5 H 1.48502 * 109.47421 * 24.54302 * 3 2 1 6 6 H 1.48501 * 109.46786 * 144.53781 * 3 2 1 7 7 C 1.38812 * 120.00205 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99915 * 337.63043 * 7 2 1 9 9 N 1.36937 * 120.00145 * 157.62855 * 7 2 1 10 10 C 1.47427 * 125.64633 * 341.48363 * 9 7 2 11 11 C 1.54916 * 104.82865 * 204.16136 * 10 9 7 12 12 C 1.55155 * 101.58150 * 322.99151 * 11 10 9 13 13 O 1.42898 * 110.87099 * 277.06793 * 12 11 10 14 14 C 1.52996 * 110.72058 * 153.86405 * 12 11 10 15 15 N 1.46500 * 109.47426 * 190.01948 * 14 12 11 16 16 C 1.34776 * 120.00225 * 179.97438 * 15 14 12 17 17 O 1.21277 * 119.99830 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99918 * 180.02562 * 16 15 14 19 19 O 1.42899 * 109.46853 * 180.02562 * 18 16 15 20 20 C 1.35961 * 117.00010 * 180.02562 * 19 18 16 21 21 C 1.38663 * 120.05974 * 359.71891 * 20 19 18 22 22 C 1.38178 * 119.96658 * 180.27721 * 21 20 19 23 23 C 1.38254 * 120.09947 * 0.02562 * 22 21 20 24 24 C 1.38257 * 120.12450 * 0.02562 * 23 22 21 25 25 C 1.38330 * 120.03278 * 0.02562 * 24 23 22 26 26 F 1.35092 * 120.05215 * 180.02562 * 25 24 23 27 27 C 1.47021 * 125.64705 * 161.51950 * 9 7 2 28 28 H 0.96996 * 120.00322 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.36754 * 322.99817 * 10 9 7 30 30 H 1.08997 * 110.36403 * 85.32548 * 10 9 7 31 31 H 1.08991 * 111.00060 * 204.91460 * 11 10 9 32 32 H 1.08999 * 111.00040 * 81.06129 * 11 10 9 33 33 H 0.96706 * 113.99867 * 177.45433 * 13 12 11 34 34 H 1.09003 * 109.46858 * 70.02526 * 14 12 11 35 35 H 1.08994 * 109.47446 * 310.02770 * 14 12 11 36 36 H 0.97005 * 119.99550 * 0.02562 * 15 14 12 37 37 H 1.09003 * 109.46867 * 60.00585 * 18 16 15 38 38 H 1.09000 * 109.47187 * 300.00137 * 18 16 15 39 39 H 1.08002 * 120.01556 * 0.25992 * 21 20 19 40 40 H 1.08008 * 119.95002 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.93952 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.98469 * 180.02562 * 24 23 22 43 43 H 1.09005 * 109.88167 * 59.49261 * 27 9 7 44 44 H 1.08996 * 110.01399 * 298.39692 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6131 1.9799 -1.3936 5 1 1.3946 2.6832 0.5816 6 1 3.4852 1.4762 0.8123 7 6 2.0103 -1.2021 -0.0005 8 1 1.5313 -2.1024 0.3550 9 7 3.3024 -1.2465 -0.4519 10 6 3.9506 -0.2319 -1.3027 11 6 5.0954 -0.9894 -2.0208 12 6 5.5799 -1.9522 -0.9048 13 8 6.4903 -1.2923 -0.0230 14 6 6.2244 -3.2011 -1.5096 15 7 6.4537 -4.1918 -0.4549 16 6 7.0155 -5.3792 -0.7563 17 8 7.3318 -5.6274 -1.9005 18 6 7.2508 -6.3984 0.3285 19 8 7.8529 -7.5648 -0.2364 20 6 8.1326 -8.5884 0.6137 21 6 7.8392 -8.4699 1.9638 22 6 8.1296 -9.5090 2.8270 23 6 8.7129 -10.6669 2.3468 24 6 9.0081 -10.7888 1.0016 25 6 8.7206 -9.7514 0.1329 26 9 9.0084 -9.8704 -1.1817 27 6 4.2726 -2.3143 -0.1690 28 1 -0.4850 0.8400 -0.0004 29 1 3.2414 0.1621 -2.0306 30 1 4.3548 0.5743 -0.6905 31 1 5.8898 -0.3052 -2.3187 32 1 4.7179 -1.5449 -2.8793 33 1 6.7915 -1.8411 0.7142 34 1 7.1758 -2.9328 -1.9689 35 1 5.5618 -3.6220 -2.2657 36 1 6.2004 -3.9934 0.4602 37 1 6.2993 -6.6664 0.7877 38 1 7.9137 -5.9778 1.0847 39 1 7.3842 -7.5657 2.3404 40 1 7.9013 -9.4163 3.8786 41 1 8.9384 -11.4777 3.0237 42 1 9.4633 -11.6945 0.6288 43 1 3.8924 -3.2676 -0.5362 44 1 4.4561 -2.3770 0.9036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271219419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:47 Heat of formation + Delta-G solvation = -130.193858 kcal Electronic energy + Delta-G solvation = -28653.834660 eV Core-core repulsion = 24293.244851 eV Total energy + Delta-G solvation = -4360.589809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -49.84579 -41.54986 -40.81580 -39.90238 -38.30065 -36.96053 -35.46924 -34.24663 -32.06084 -31.66680 -31.34751 -30.33717 -29.11815 -27.41594 -25.09182 -23.82733 -23.41887 -22.92078 -21.63865 -21.40450 -19.65173 -19.03444 -18.91594 -18.10532 -17.73219 -17.61384 -17.32447 -17.18441 -16.75263 -16.62971 -16.04779 -15.92865 -15.83234 -15.49242 -15.38436 -15.26778 -15.12439 -14.53692 -14.18783 -14.11421 -13.84356 -13.70456 -13.54178 -13.32221 -13.23346 -12.95409 -12.75586 -12.67080 -12.21587 -12.16915 -12.15314 -12.04793 -11.85170 -11.48375 -11.10754 -10.98107 -10.83521 -10.30156 -9.94108 -9.25967 -9.08468 -8.20072 -5.46779 0.13276 0.25538 1.29956 1.36803 1.38703 1.41712 1.47479 2.39764 2.47331 2.61318 2.96311 3.14578 3.17457 3.25705 3.43920 3.58296 3.71531 3.74814 3.80818 3.91059 4.03380 4.06227 4.29138 4.33258 4.34430 4.34751 4.51097 4.61254 4.72460 4.75686 4.83622 4.92858 4.97847 5.03403 5.09733 5.14488 5.19956 5.26890 5.44198 5.64320 5.65767 6.07912 6.16264 6.35885 6.72373 6.76783 7.04589 7.51085 8.07059 8.99344 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021605 B = 0.002110 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.678339 B =13265.464383 C =13865.889541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.035 4.035 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.309 1.309 6 H -0.272 1.272 7 C -0.234 4.234 8 H 0.064 0.936 9 N -0.624 5.624 10 C 0.105 3.895 11 C -0.109 4.109 12 C 0.126 3.874 13 O -0.552 6.552 14 C 0.118 3.882 15 N -0.709 5.709 16 C 0.515 3.485 17 O -0.570 6.570 18 C 0.039 3.961 19 O -0.321 6.321 20 C 0.074 3.926 21 C -0.183 4.183 22 C -0.083 4.083 23 C -0.125 4.125 24 C -0.119 4.119 25 C 0.028 3.972 26 F -0.156 7.156 27 C 0.108 3.892 28 H 0.263 0.737 29 H 0.042 0.958 30 H 0.023 0.977 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.390 0.610 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.418 0.582 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.045 0.955 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.501 -18.727 8.240 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.230 4.230 3 Si 0.774 3.226 4 H -0.198 1.198 5 H -0.237 1.237 6 H -0.197 1.197 7 C -0.362 4.362 8 H 0.082 0.918 9 N -0.351 5.351 10 C -0.020 4.020 11 C -0.148 4.148 12 C 0.084 3.916 13 O -0.360 6.360 14 C -0.006 4.006 15 N -0.364 5.364 16 C 0.302 3.698 17 O -0.449 6.449 18 C -0.038 4.038 19 O -0.234 6.234 20 C 0.028 3.972 21 C -0.201 4.201 22 C -0.101 4.101 23 C -0.143 4.143 24 C -0.137 4.137 25 C 0.008 3.992 26 F -0.135 7.135 27 C -0.017 4.017 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.240 0.760 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.256 0.744 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.184 0.816 40 H 0.185 0.815 41 H 0.183 0.817 42 H 0.174 0.826 43 H 0.063 0.937 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 21.466 -18.319 6.784 29.024 hybrid contribution -0.387 0.749 0.392 0.930 sum 21.079 -17.570 7.176 28.364 Atomic orbital electron populations 1.69958 1.07092 1.27257 1.55767 1.25599 0.95756 1.00611 1.01031 0.85984 0.77666 0.80574 0.78420 1.19828 1.23704 1.19722 1.18580 0.86125 0.94349 1.37156 0.91791 1.44787 1.09273 1.23690 1.57393 1.22031 0.94292 0.92774 0.92880 1.22744 0.97354 0.98383 0.96295 1.22161 0.87511 0.91102 0.90817 1.86590 1.63578 1.44042 1.41815 1.21830 1.01490 0.86799 0.90524 1.45618 1.62681 1.15026 1.13046 1.20529 0.76959 0.82828 0.89524 1.90764 1.51789 1.78728 1.23576 1.22754 1.02274 0.83962 0.94818 1.86159 1.76838 1.24316 1.36109 1.19358 0.99043 0.87711 0.91039 1.21580 1.05242 1.03303 0.89964 1.21529 0.95380 0.91786 1.01406 1.21405 0.99243 0.99622 0.94029 1.21344 1.00770 0.97608 0.94019 1.17624 1.07132 0.95741 0.78700 1.91452 1.92012 1.96376 1.33636 1.22236 0.89048 0.91909 0.98465 0.92849 0.93997 0.95897 0.88053 0.88260 0.76028 0.89806 0.90819 0.74437 0.85561 0.84780 0.81577 0.81541 0.81674 0.82605 0.93680 0.93304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.65 13.97 21.65 0.30 -59.34 16 2 C -0.04 -2.05 5.43 84.86 0.46 -1.59 16 3 Si 0.94 46.94 24.27 68.60 1.66 48.60 16 4 H -0.27 -12.81 6.49 99.48 0.65 -12.17 16 5 H -0.31 -15.49 7.11 99.48 0.71 -14.78 16 6 H -0.27 -13.19 6.66 99.48 0.66 -12.53 16 7 C -0.23 -13.07 10.57 84.03 0.89 -12.18 16 8 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 9 N -0.62 -28.52 3.21 -691.97 -2.22 -30.74 16 10 C 0.10 4.33 4.69 86.86 0.41 4.74 16 11 C -0.11 -3.27 6.26 31.99 0.20 -3.07 16 12 C 0.13 3.29 0.93 -9.61 -0.01 3.28 16 13 O -0.55 -13.41 13.10 -148.98 -1.95 -15.36 16 14 C 0.12 2.63 4.80 86.38 0.41 3.04 16 15 N -0.71 -12.29 5.13 -463.07 -2.38 -14.67 16 16 C 0.52 11.33 7.91 87.66 0.69 12.02 16 17 O -0.57 -19.11 16.50 16.02 0.26 -18.84 16 18 C 0.04 0.57 5.22 71.24 0.37 0.94 16 19 O -0.32 -7.64 9.54 -74.08 -0.71 -8.35 16 20 C 0.07 1.45 6.69 22.53 0.15 1.60 16 21 C -0.18 -1.99 9.04 22.36 0.20 -1.79 16 22 C -0.08 -0.62 10.04 22.26 0.22 -0.39 16 23 C -0.13 -1.03 10.04 22.28 0.22 -0.80 16 24 C -0.12 -1.61 10.02 22.30 0.22 -1.39 16 25 C 0.03 0.59 7.31 22.45 0.16 0.75 16 26 F -0.16 -4.29 17.11 44.97 0.77 -3.52 16 27 C 0.11 3.59 5.76 86.73 0.50 4.09 16 28 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.04 1.88 6.63 -2.39 -0.02 1.86 16 30 H 0.02 1.01 5.58 -2.39 -0.01 1.00 16 31 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.10 2.74 7.96 -2.39 -0.02 2.72 16 33 H 0.39 5.77 8.44 -74.05 -0.62 5.15 16 34 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 1.85 8.03 -2.39 -0.02 1.83 16 36 H 0.42 4.50 7.47 -92.70 -0.69 3.81 16 37 H 0.13 1.08 7.67 -2.39 -0.02 1.06 16 38 H 0.13 0.87 7.66 -2.39 -0.02 0.85 16 39 H 0.17 0.76 6.30 -2.91 -0.02 0.74 16 40 H 0.17 0.16 8.06 -2.91 -0.02 0.13 16 41 H 0.17 0.31 8.06 -2.91 -0.02 0.29 16 42 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 43 H 0.05 1.48 7.82 -2.38 -0.02 1.46 16 44 H 0.05 1.49 8.07 -2.39 -0.02 1.47 16 Total: -1.00 -85.96 366.24 0.50 -85.46 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -0.37 Total: 7.52 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 5.11 Total: 9.24 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -4.29 Total: -104.75 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -2.39 Total: -42.56 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.77 Total: -3.52 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.66 Total: 48.60 kcal Total: -85.96 0.50 -85.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271219419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.733 kcal (2) G-P(sol) polarization free energy of solvation -85.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds