Wall clock time and date at job start Tue Mar 31 2020 20:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99466 * 2 1 4 4 H 1.48503 * 109.47033 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47330 * 299.99962 * 3 2 1 6 6 H 1.48501 * 109.47025 * 59.99904 * 3 2 1 7 7 C 1.38807 * 120.00645 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00346 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99626 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.64847 * 359.97438 * 9 7 2 11 11 C 1.54908 * 104.83420 * 155.90763 * 10 9 7 12 12 C 1.55161 * 101.57977 * 37.00712 * 11 10 9 13 13 O 1.42893 * 110.72103 * 83.03910 * 12 11 10 14 14 C 1.53004 * 110.72031 * 206.13623 * 12 11 10 15 15 N 1.46499 * 109.47198 * 179.97438 * 14 12 11 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 14 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 14 19 19 O 1.42908 * 109.46887 * 180.02562 * 18 16 15 20 20 C 1.35952 * 116.99784 * 179.97438 * 19 18 16 21 21 C 1.38661 * 120.06394 * 359.97438 * 20 19 18 22 22 C 1.38183 * 119.96874 * 179.97438 * 21 20 19 23 23 C 1.38260 * 120.09472 * 0.02562 * 22 21 20 24 24 C 1.38253 * 120.12908 * 0.02562 * 23 22 21 25 25 C 1.38332 * 120.02618 * 359.69889 * 24 23 22 26 26 F 1.35102 * 120.04874 * 180.28130 * 25 24 23 27 27 C 1.47024 * 125.64418 * 180.02562 * 9 7 2 28 28 H 0.96995 * 120.00540 * 0.02562 * 1 2 3 29 29 H 1.08997 * 110.36798 * 37.06289 * 10 9 7 30 30 H 1.09005 * 110.45956 * 274.78840 * 10 9 7 31 31 H 1.09001 * 111.00246 * 278.93823 * 11 10 9 32 32 H 1.08993 * 111.00681 * 155.07603 * 11 10 9 33 33 H 0.96704 * 114.00451 * 182.43888 * 13 12 11 34 34 H 1.09009 * 109.46730 * 59.99757 * 14 12 11 35 35 H 1.08998 * 109.46846 * 300.00302 * 14 12 11 36 36 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 37 37 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 38 38 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 39 39 H 1.07999 * 120.01934 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.95134 * 180.02562 * 22 21 20 41 41 H 1.08007 * 119.94051 * 179.97438 * 23 22 21 42 42 H 1.07996 * 119.98800 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.87974 * 61.61066 * 27 9 7 44 44 H 1.08997 * 109.88589 * 300.43824 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8912 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1413 -2.5332 0.0005 11 6 -0.4014 -3.9326 -0.6107 12 6 0.7787 -4.7524 -0.0253 13 8 0.4723 -5.2084 1.2938 14 6 1.1236 -5.9317 -0.9371 15 7 2.2394 -6.6853 -0.3598 16 6 2.7210 -7.7706 -0.9975 17 8 2.2273 -8.1263 -2.0467 18 6 3.8729 -8.5421 -0.4068 19 8 4.1988 -9.6402 -1.2614 20 6 5.2243 -10.4429 -0.8711 21 6 5.9026 -10.1788 0.3091 22 6 6.9443 -10.9962 0.7043 23 6 7.3117 -12.0771 -0.0757 24 6 6.6388 -12.3434 -1.2537 25 6 5.5915 -11.5319 -1.6514 26 9 4.9299 -11.7951 -2.7995 27 6 1.9321 -3.7274 0.0016 28 1 -0.4851 0.8400 -0.0004 29 1 -0.5991 -1.7591 -0.6153 30 1 -0.5289 -2.4859 1.0183 31 1 -0.3516 -3.8989 -1.6991 32 1 -1.3586 -4.3330 -0.2770 33 1 1.1920 -5.6945 1.7192 34 1 1.4078 -5.5590 -1.9212 35 1 0.2551 -6.5834 -1.0322 36 1 2.6345 -6.4006 0.4791 37 1 4.7387 -7.8867 -0.3121 38 1 3.5922 -8.9178 0.5770 39 1 5.6165 -9.3351 0.9196 40 1 7.4722 -10.7905 1.6237 41 1 8.1265 -12.7141 0.2353 42 1 6.9279 -13.1881 -1.8614 43 1 2.5283 -3.8636 0.9039 44 1 2.5587 -3.8514 -0.8816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271219421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:53 Heat of formation + Delta-G solvation = -102.298603 kcal Electronic energy + Delta-G solvation = -28533.537766 eV Core-core repulsion = 24174.157586 eV Total energy + Delta-G solvation = -4359.380180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.04357 -40.73261 -39.77824 -38.57663 -37.60779 -35.25977 -34.28683 -32.19937 -31.18409 -30.90855 -29.83185 -29.01510 -27.65730 -25.65316 -23.82082 -23.11367 -22.80423 -21.03381 -20.16545 -19.98718 -18.99392 -18.07271 -17.43676 -17.00975 -16.92526 -16.80551 -16.22992 -15.80227 -15.68886 -15.27857 -14.93695 -14.80861 -14.78844 -14.30895 -14.15770 -13.85203 -13.42215 -13.31831 -13.10181 -12.98361 -12.76606 -12.36316 -12.17095 -12.16647 -11.65178 -11.64244 -11.58334 -11.08795 -10.93186 -10.84277 -10.43988 -10.20180 -10.16240 -9.90018 -9.77308 -9.49836 -9.41723 -9.25762 -8.70463 -8.64810 -6.91409 -5.71363 -3.14081 0.66158 0.79290 2.13429 2.34048 3.11854 3.24891 3.35889 3.40928 3.43802 3.84035 4.16108 4.30305 4.37215 4.40632 4.46705 4.51134 4.60489 4.73899 4.76890 4.79131 5.01623 5.09795 5.33947 5.44554 5.48048 5.56149 5.58052 5.70855 5.78703 5.89175 5.90886 6.10946 6.16507 6.19034 6.34058 6.43763 6.52955 6.55874 6.78468 7.18491 7.50979 7.55695 7.78554 7.83442 7.95281 8.29153 9.14951 9.75391 10.39187 11.32403 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019424 B = 0.002028 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.195756 B =13800.897907 C =14472.834094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.600 5.600 10 C 0.155 3.845 11 C -0.128 4.128 12 C 0.105 3.895 13 O -0.541 6.541 14 C 0.106 3.894 15 N -0.722 5.722 16 C 0.516 3.484 17 O -0.513 6.513 18 C 0.039 3.961 19 O -0.281 6.281 20 C 0.098 3.902 21 C -0.185 4.185 22 C -0.089 4.089 23 C -0.130 4.130 24 C -0.117 4.117 25 C 0.072 3.928 26 F -0.129 7.129 27 C 0.117 3.883 28 H 0.253 0.747 29 H 0.109 0.891 30 H 0.019 0.981 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.362 0.638 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.399 0.601 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.023 0.977 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.386 -23.365 3.046 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.326 5.326 10 C 0.031 3.969 11 C -0.167 4.167 12 C 0.064 3.936 13 O -0.345 6.345 14 C -0.017 4.017 15 N -0.376 5.376 16 C 0.300 3.700 17 O -0.387 6.387 18 C -0.039 4.039 19 O -0.193 6.193 20 C 0.051 3.949 21 C -0.203 4.203 22 C -0.107 4.107 23 C -0.148 4.148 24 C -0.135 4.135 25 C 0.052 3.948 26 F -0.108 7.108 27 C -0.010 4.010 28 H 0.064 0.936 29 H 0.126 0.874 30 H 0.037 0.963 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.208 0.792 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.161 0.839 43 H 0.041 0.959 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 11.241 -23.105 1.908 25.765 hybrid contribution 1.235 0.761 0.669 1.598 sum 12.476 -22.343 2.576 25.720 Atomic orbital electron populations 1.69795 1.04903 1.24823 1.57250 1.24811 0.95758 0.97808 1.02192 0.85984 0.78586 0.83490 0.77311 1.20548 1.21641 1.21693 1.19092 0.90475 0.82336 1.43507 0.90466 1.44424 1.01995 0.99335 1.86851 1.21943 0.84440 0.91820 0.98707 1.23060 0.95519 0.98268 0.99861 1.22592 0.98026 0.90986 0.82021 1.86662 1.42980 1.75946 1.28943 1.22151 0.88513 0.93080 0.97983 1.45783 1.36496 1.28724 1.26612 1.19881 0.83941 0.80973 0.85252 1.90786 1.58941 1.67049 1.21955 1.22564 0.98285 0.88699 0.94388 1.86236 1.47454 1.38373 1.47245 1.19095 0.90027 0.91473 0.94283 1.21225 0.99373 1.03185 0.96553 1.21049 0.95849 0.94065 0.99730 1.20966 1.00868 0.98581 0.94435 1.21065 0.94609 0.99696 0.98167 1.17031 0.96221 0.96286 0.85222 1.91540 1.79508 1.93399 1.46323 1.21931 0.93596 0.87242 0.98257 0.93639 0.87383 0.96332 0.90485 0.90980 0.79179 0.89979 0.90440 0.76650 0.88458 0.88547 0.84271 0.84834 0.84742 0.83946 0.95934 0.95140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.49 10.09 55.49 0.56 -25.93 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 3 Si 0.92 21.73 29.55 -169.99 -5.02 16.71 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.23 -6.17 10.27 -15.06 -0.15 -6.32 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.95 3.39 -170.07 -0.58 -15.52 16 10 C 0.16 3.74 5.88 -2.53 -0.01 3.73 16 11 C -0.13 -2.38 6.26 -24.58 -0.15 -2.54 16 12 C 0.11 1.70 0.92 -88.78 -0.08 1.62 16 13 O -0.54 -8.36 13.09 -35.23 -0.46 -8.82 16 14 C 0.11 1.47 4.74 -4.04 -0.02 1.45 16 15 N -0.72 -7.87 5.20 -60.29 -0.31 -8.18 16 16 C 0.52 6.41 7.91 -10.99 -0.09 6.33 16 17 O -0.51 -8.96 16.50 -14.35 -0.24 -9.19 16 18 C 0.04 0.34 5.22 36.00 0.19 0.53 16 19 O -0.28 -3.47 9.54 -39.50 -0.38 -3.85 16 20 C 0.10 1.00 6.69 -39.18 -0.26 0.74 16 21 C -0.18 -1.30 9.04 -39.45 -0.36 -1.66 16 22 C -0.09 -0.50 10.04 -39.59 -0.40 -0.90 16 23 C -0.13 -0.74 10.04 -39.57 -0.40 -1.14 16 24 C -0.12 -0.86 10.02 -39.54 -0.40 -1.26 16 25 C 0.07 0.76 7.31 -39.30 -0.29 0.48 16 26 F -0.13 -1.66 17.11 2.25 0.04 -1.63 16 27 C 0.12 2.24 6.29 -3.06 -0.02 2.22 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.11 2.91 5.87 -51.93 -0.31 2.60 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.36 8.05 -51.93 -0.42 0.95 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.36 3.88 7.79 45.56 0.35 4.23 16 34 H 0.08 1.24 8.06 -51.92 -0.42 0.82 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.40 3.14 7.27 -40.82 -0.30 2.84 16 37 H 0.10 0.60 7.66 -51.93 -0.40 0.20 16 38 H 0.10 0.54 7.66 -51.93 -0.40 0.14 16 39 H 0.14 0.64 6.30 -52.49 -0.33 0.31 16 40 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 41 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 42 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 44 H 0.03 0.59 7.76 -51.93 -0.40 0.18 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -36.06 371.16 -8.45 -44.51 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.11 Total: 3.40 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -2.54 Total: 2.91 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -0.33 Total: -49.63 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -1.07 Total: -21.86 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.06 -8.45 -44.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271219421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.790 kcal (2) G-P(sol) polarization free energy of solvation -36.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds