Wall clock time and date at job start Tue Mar 31 2020 21:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 C 1.35244 * 126.69049 * 2 1 4 4 C 1.42049 * 103.95467 * 180.12022 * 3 2 1 5 5 N 1.39364 * 126.89871 * 179.84720 * 4 3 2 6 6 C 1.34777 * 119.99617 * 359.97438 * 5 4 3 7 7 O 1.21353 * 120.00418 * 359.71589 * 6 5 4 8 8 C 1.49380 * 119.99763 * 179.71860 * 6 5 4 9 9 O 1.21353 * 119.99821 * 0.02562 * 8 6 5 10 10 N 1.34773 * 120.00133 * 179.97438 * 8 6 5 11 11 C 1.46500 * 120.00431 * 180.02562 * 10 8 6 12 12 C 1.52991 * 109.47288 * 180.02562 * 11 10 8 13 13 O 1.42900 * 110.63988 * 66.69026 * 12 11 10 14 14 C 1.55161 * 110.71850 * 190.02084 * 12 11 10 15 15 C 1.54917 * 101.57983 * 153.86651 * 14 12 11 16 16 N 1.47429 * 104.83111 * 322.99218 * 15 14 12 17 17 C 1.36933 * 125.64585 * 204.16697 * 16 15 14 18 18 H 1.08002 * 119.99516 * 179.97438 * 17 16 15 19 19 C 1.38812 * 120.00315 * 359.95709 * 17 16 15 20 20 N 1.31617 * 119.99693 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00210 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47423 * 89.99773 * 21 19 17 23 23 H 1.48500 * 109.47283 * 209.99674 * 21 19 17 24 24 H 1.48506 * 109.47139 * 330.00054 * 21 19 17 25 25 C 1.47016 * 108.70276 * 24.12633 * 16 15 14 26 26 N 1.30747 * 106.20471 * 359.59777 * 4 3 2 27 27 O 1.20914 * 111.47013 * 0.25365 * 26 4 3 28 28 H 1.09003 * 109.47540 * 180.35667 * 1 2 3 29 29 H 1.08997 * 109.47577 * 300.35905 * 1 2 3 30 30 H 1.09002 * 109.47043 * 60.35821 * 1 2 3 31 31 H 1.07996 * 128.02324 * 359.97438 * 3 2 1 32 32 H 0.97001 * 119.99836 * 179.71182 * 5 4 3 33 33 H 0.97000 * 120.00112 * 0.02562 * 10 8 6 34 34 H 1.09000 * 109.46865 * 300.00792 * 11 10 8 35 35 H 1.09001 * 109.46879 * 60.00190 * 11 10 8 36 36 H 0.96697 * 114.00158 * 300.69289 * 13 12 11 37 37 H 1.08991 * 111.00840 * 271.94150 * 14 12 11 38 38 H 1.09000 * 111.00480 * 35.79321 * 14 12 11 39 39 H 1.08998 * 110.36545 * 204.15751 * 15 14 12 40 40 H 1.08996 * 110.36969 * 81.83100 * 15 14 12 41 41 H 0.97004 * 119.99851 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.88843 * 239.51964 * 25 16 15 43 43 H 1.09002 * 109.88170 * 118.35699 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0845 0.0000 4 6 3.6251 0.5355 -0.0029 5 7 4.8275 1.2400 -0.0070 6 6 4.8188 2.5877 -0.0091 7 8 3.7640 3.1878 -0.0127 8 6 6.1077 3.3429 -0.0072 9 8 7.1625 2.7429 -0.0042 10 7 6.0991 4.6906 -0.0098 11 6 7.3630 5.4313 -0.0085 12 6 7.0738 6.9336 -0.0114 13 8 6.4565 7.3301 1.2149 14 6 8.3739 7.7424 -0.2626 15 6 7.8143 9.0433 -0.8908 16 7 6.6864 8.6017 -1.7312 17 6 6.1851 9.2760 -2.8125 18 1 5.3527 8.8666 -3.3656 19 6 6.7464 10.4858 -3.1975 20 7 7.7603 10.9850 -2.5228 21 14 6.0620 11.4058 -4.6720 22 1 4.9893 12.3300 -4.2245 23 1 7.1491 12.1849 -5.3175 24 1 5.5036 10.4341 -5.6463 25 6 6.1898 7.3172 -1.2168 26 7 3.4764 -0.7635 0.0045 27 8 2.3081 -1.0752 0.0063 28 1 -0.3634 -1.0276 0.0064 29 1 -0.3634 0.5194 0.8867 30 1 -0.3633 0.5083 -0.8932 31 1 2.0302 2.1262 -0.0004 32 1 5.6706 0.7604 -0.0045 33 1 5.2560 5.1703 -0.0126 34 1 7.9344 5.1733 0.8832 35 1 7.9382 5.1699 -0.8967 36 1 5.6199 6.8809 1.3974 37 1 8.8909 7.9517 0.6737 38 1 9.0291 7.2218 -0.9610 39 1 8.5760 9.5275 -1.5019 40 1 7.4645 9.7208 -0.1119 41 1 8.1524 11.8306 -2.7916 42 1 6.2663 6.5534 -1.9905 43 1 5.1528 7.4217 -0.8975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271221536.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:04 Heat of formation + Delta-G solvation = -11.728496 kcal Electronic energy + Delta-G solvation = -28910.061574 eV Core-core repulsion = 24574.528771 eV Total energy + Delta-G solvation = -4335.532804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.27086 -41.23879 -39.47102 -38.45033 -36.34862 -35.23965 -34.44015 -34.00878 -32.40277 -32.15660 -29.79845 -28.57912 -28.22213 -26.45567 -25.38146 -23.95594 -23.17081 -21.58725 -20.99033 -20.18100 -20.04751 -18.99728 -18.08716 -17.91859 -17.18193 -16.97533 -16.71223 -16.41769 -16.23058 -15.53919 -15.00022 -14.78569 -14.46894 -14.17389 -14.06719 -13.93407 -13.83283 -13.70057 -13.32931 -13.06124 -12.91689 -12.44929 -12.22900 -12.17098 -12.03152 -11.65595 -11.64530 -11.09655 -10.91848 -10.87036 -10.46169 -10.22740 -10.18313 -9.93154 -9.80850 -9.77633 -9.54264 -9.46304 -9.32311 -8.69854 -6.91493 -5.71047 -3.13580 0.66350 1.17335 1.59348 1.96018 2.71021 2.83967 3.02017 3.36968 3.41835 3.43870 3.83905 4.02040 4.36363 4.40672 4.45787 4.63054 4.68832 4.82226 4.97065 5.05537 5.10277 5.23651 5.35325 5.43026 5.49834 5.51505 5.67176 5.80880 5.88673 5.91933 6.14946 6.32391 6.32870 6.42258 6.50535 6.52750 6.85492 7.17948 7.50758 7.54258 7.56212 7.78505 7.84506 7.88979 8.29015 9.15369 9.75621 10.39221 11.32786 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016059 B = 0.002288 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.119780 B =12235.767706 C =13365.963295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.020 4.020 3 C -0.227 4.227 4 C 0.244 3.756 5 N -0.607 5.607 6 C 0.520 3.480 7 O -0.488 6.488 8 C 0.515 3.485 9 O -0.513 6.513 10 N -0.688 5.688 11 C 0.100 3.900 12 C 0.104 3.896 13 O -0.542 6.542 14 C -0.127 4.127 15 C 0.155 3.845 16 N -0.599 5.599 17 C -0.226 4.226 18 H 0.077 0.923 19 C -0.009 4.009 20 N -0.920 5.920 21 Si 0.916 3.084 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.114 3.886 26 N -0.383 5.383 27 O 0.101 5.899 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.193 0.807 32 H 0.432 0.568 33 H 0.414 0.586 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.366 0.634 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.109 0.891 40 H 0.019 0.981 41 H 0.253 0.747 42 H 0.031 0.969 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.004 -20.879 7.555 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 C -0.250 4.250 4 C -0.005 4.005 5 N -0.260 5.260 6 C 0.301 3.699 7 O -0.359 6.359 8 C 0.294 3.706 9 O -0.389 6.389 10 N -0.341 5.341 11 C -0.023 4.023 12 C 0.063 3.937 13 O -0.346 6.346 14 C -0.166 4.166 15 C 0.031 3.969 16 N -0.325 5.325 17 C -0.354 4.354 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.568 5.568 21 Si 0.747 3.253 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C -0.013 4.013 26 N -0.098 5.098 27 O 0.039 5.961 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.210 0.790 32 H 0.271 0.729 33 H 0.251 0.749 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.213 0.787 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -8.566 -21.242 7.460 24.088 hybrid contribution -1.132 0.820 -0.765 1.593 sum -9.698 -20.422 6.695 23.578 Atomic orbital electron populations 1.20380 0.83488 1.04792 1.04540 1.24475 0.96596 0.85639 1.01699 1.22729 0.89046 1.02375 1.10846 1.20443 0.88024 0.89011 1.02982 1.42049 1.07242 1.05903 1.70791 1.20392 0.90684 0.81778 0.76996 1.90738 1.32114 1.67996 1.45054 1.19438 0.88255 0.83663 0.79220 1.90814 1.31609 1.68341 1.48110 1.45797 1.11827 1.05019 1.71479 1.22382 0.84607 0.91301 1.03988 1.22582 0.96518 0.89735 0.84881 1.86636 1.39814 1.68529 1.39655 1.23069 0.93456 0.99195 1.00873 1.21964 0.91545 0.90382 0.93035 1.44399 1.36326 1.19629 1.32152 1.19056 1.12240 1.01222 1.02925 0.90487 1.24801 0.98502 0.97652 0.99562 1.69783 1.25640 1.20436 1.40985 0.86050 0.77838 0.79647 0.81807 1.21562 1.21575 1.20677 1.21941 0.95437 0.90721 0.93203 1.74085 0.97689 1.12914 1.25084 1.84821 1.10341 1.32421 1.68496 0.89712 0.88852 0.88822 0.79035 0.72931 0.74948 0.89712 0.89318 0.78732 0.90891 0.90453 0.87312 0.96263 0.93596 0.95139 0.95657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.44 36.00 0.38 0.11 16 2 C -0.02 -0.16 7.47 -35.38 -0.26 -0.43 16 3 C -0.23 -2.25 9.79 -39.19 -0.38 -2.63 16 4 C 0.24 2.75 8.17 -154.93 -1.27 1.48 16 5 N -0.61 -6.39 5.41 -11.86 -0.06 -6.45 16 6 C 0.52 5.86 7.85 -11.62 -0.09 5.77 16 7 O -0.49 -5.94 13.75 5.49 0.08 -5.87 16 8 C 0.52 6.17 7.89 -11.62 -0.09 6.07 16 9 O -0.51 -7.09 16.48 5.49 0.09 -7.00 16 10 N -0.69 -8.00 5.13 -60.76 -0.31 -8.31 16 11 C 0.10 1.31 4.80 -4.05 -0.02 1.29 16 12 C 0.10 1.68 0.93 -88.79 -0.08 1.60 16 13 O -0.54 -8.53 13.10 -35.23 -0.46 -8.99 16 14 C -0.13 -2.30 6.26 -24.58 -0.15 -2.45 16 15 C 0.16 3.71 5.88 -2.52 -0.01 3.69 16 16 N -0.60 -14.93 3.39 -170.08 -0.58 -15.50 16 17 C -0.23 -6.20 10.27 -15.06 -0.15 -6.35 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -26.45 10.09 55.49 0.56 -25.89 16 21 Si 0.92 21.80 29.55 -169.99 -5.02 16.77 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 25 C 0.11 2.21 5.76 -3.07 -0.02 2.19 16 26 N -0.38 -4.40 12.10 31.18 0.38 -4.02 16 27 O 0.10 1.00 11.19 17.04 0.19 1.19 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.19 1.89 6.22 -52.49 -0.33 1.57 16 32 H 0.43 4.01 8.29 -40.82 -0.34 3.67 16 33 H 0.41 4.46 6.94 -40.82 -0.28 4.18 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.20 8.03 -51.93 -0.42 0.78 16 36 H 0.37 4.30 8.44 45.56 0.38 4.68 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.08 1.31 7.96 -51.93 -0.41 0.89 16 39 H 0.11 2.90 5.87 -51.93 -0.31 2.59 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.03 0.59 7.82 -51.93 -0.41 0.18 16 43 H 0.03 0.49 8.07 -51.93 -0.42 0.07 16 LS Contribution 365.16 15.07 5.50 5.50 Total: -1.00 -33.32 365.16 -6.51 -39.82 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.61 Total: 8.76 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -2.26 Total: 9.98 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.02 Total: -60.17 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.10 Total: -20.67 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.32 -6.51 -39.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271221536.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.095 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds