Wall clock time and date at job start Tue Mar 31 2020 22:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33690 * 126.27357 * 2 1 4 4 C 1.30613 * 108.99626 * 180.02562 * 3 2 1 5 5 O 1.33666 * 109.15144 * 359.73653 * 4 3 2 6 6 C 1.35332 * 107.68632 * 0.42716 * 5 4 3 7 7 C 1.46726 * 126.64550 * 179.83938 * 6 5 4 8 8 O 1.21682 * 120.00122 * 179.68833 * 7 6 5 9 9 N 1.34774 * 119.99633 * 359.69222 * 7 6 5 10 10 C 1.46506 * 120.00072 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47289 * 180.02562 * 10 9 7 12 12 O 1.42902 * 112.93986 * 53.43041 * 11 10 9 13 13 C 1.53936 * 113.73271 * 281.72830 * 11 10 9 14 14 N 1.47965 * 86.18125 * 221.92186 * 13 11 10 15 15 C 1.46897 * 110.99986 * 137.58290 * 14 13 11 16 16 C 1.50695 * 109.47655 * 70.64030 * 15 14 13 17 17 O 1.21293 * 119.99477 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00357 * 179.97438 * 16 15 14 19 19 C 1.37101 * 120.00197 * 179.97438 * 18 16 15 20 20 H 1.08003 * 119.99830 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31403 * 120.00608 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99713 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47055 * 59.99722 * 23 21 19 25 25 H 1.48500 * 109.47276 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47377 * 300.00205 * 23 21 19 27 27 C 1.47965 * 90.76016 * 24.68706 * 14 13 11 28 28 H 1.09000 * 109.47409 * 269.95416 * 1 2 3 29 29 H 1.08998 * 109.47384 * 29.96002 * 1 2 3 30 30 H 1.09003 * 109.47036 * 149.95455 * 1 2 3 31 31 H 1.08004 * 125.42166 * 179.97438 * 4 3 2 32 32 H 0.97001 * 120.00676 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.47060 * 300.00359 * 10 9 7 34 34 H 1.09004 * 109.47073 * 59.99848 * 10 9 7 35 35 H 0.96700 * 114.00112 * 309.67230 * 12 11 10 36 36 H 1.09004 * 113.75666 * 336.23438 * 13 11 10 37 37 H 1.08994 * 113.76101 * 107.60142 * 13 11 10 38 38 H 1.08998 * 109.46976 * 190.64523 * 15 14 13 39 39 H 1.09003 * 109.47269 * 310.63350 * 15 14 13 40 40 H 0.96997 * 120.00370 * 359.97438 * 18 16 15 41 41 H 0.97001 * 120.00533 * 179.97438 * 22 21 19 42 42 H 1.08993 * 113.75941 * 220.99055 * 27 14 13 43 43 H 1.09007 * 113.85397 * 89.64501 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 -0.0006 5 8 3.5889 -0.6460 0.0049 6 6 2.3137 -1.0992 -0.0007 7 6 1.8826 -2.5017 -0.0010 8 8 0.6966 -2.7737 -0.0006 9 7 2.8004 -3.4886 -0.0016 10 6 2.3701 -4.8891 -0.0014 11 6 3.5992 -5.8003 -0.0016 12 8 4.5138 -5.5020 1.0551 13 6 4.2671 -5.9393 -1.3815 14 7 4.4035 -7.3773 -1.0607 15 6 4.0728 -8.2100 -2.2247 16 6 5.1546 -8.0723 -3.2647 17 8 6.1077 -7.3516 -3.0565 18 7 5.0635 -8.7506 -4.4257 19 6 6.0475 -8.6249 -5.3721 20 1 6.8954 -7.9819 -5.1874 21 6 5.9539 -9.3246 -6.5689 22 7 4.9221 -10.1066 -6.7939 23 14 7.2949 -9.1538 -7.8580 24 1 8.5918 -9.5953 -7.2847 25 1 6.9615 -9.9971 -9.0340 26 1 7.3981 -7.7337 -8.2799 27 6 3.2608 -7.2969 -0.1242 28 1 -0.3634 -0.0008 1.0276 29 1 -0.3634 0.8903 -0.5132 30 1 -0.3633 -0.8896 -0.5146 31 1 4.4043 1.3444 -0.0011 32 1 3.7459 -3.2719 -0.0023 33 1 1.7728 -5.0855 0.8890 34 1 1.7716 -5.0854 -0.8910 35 1 4.7516 -4.5668 1.1173 36 1 3.5962 -5.7374 -2.2165 37 1 5.2194 -5.4153 -1.4633 38 1 3.9964 -9.2525 -1.9157 39 1 3.1210 -7.8852 -2.6452 40 1 4.3019 -9.3278 -4.5918 41 1 4.8565 -10.5948 -7.6295 42 1 3.4091 -7.8577 0.7986 43 1 2.2947 -7.4921 -0.5898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271269360.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:24 Heat of formation + Delta-G solvation = -83.418131 kcal Electronic energy + Delta-G solvation = -28702.368790 eV Core-core repulsion = 24363.727290 eV Total energy + Delta-G solvation = -4338.641500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.50657 -41.83278 -40.58369 -39.70484 -37.06806 -36.46646 -35.90693 -35.38447 -33.32131 -32.79181 -31.60966 -29.59561 -28.20646 -27.27624 -26.73826 -24.93162 -23.82632 -22.70297 -21.85260 -21.04073 -21.01992 -19.96931 -19.67199 -18.03428 -17.97125 -17.83395 -17.53468 -17.13621 -16.74575 -16.60908 -16.45703 -16.25941 -15.69174 -15.52723 -15.47176 -15.19997 -14.79639 -14.40276 -14.26815 -14.16759 -14.06760 -13.70419 -13.47934 -13.39759 -13.24774 -12.98737 -12.94258 -12.48539 -12.45336 -12.18918 -12.14842 -12.04159 -11.85915 -11.51585 -11.34017 -10.99894 -10.51046 -10.35912 -10.03652 -9.98425 -9.69181 -8.48326 -5.97233 -0.29780 1.33965 1.36091 1.37938 1.40056 1.50888 1.87892 1.96624 2.02947 2.26992 2.66081 2.90300 3.11861 3.18126 3.21181 3.32010 3.52198 3.62695 3.65786 3.98840 4.20297 4.27220 4.36451 4.39422 4.41807 4.45161 4.54946 4.59343 4.64530 4.66804 4.76305 4.79292 4.93461 4.97209 5.06526 5.27682 5.36089 5.39525 5.83902 6.03171 6.07737 6.49274 6.58163 6.61713 6.80890 7.10687 7.53917 8.09644 8.68829 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014122 B = 0.002230 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.223261 B =12553.652286 C =13439.716556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.074 3.926 3 N -0.527 5.527 4 C 0.231 3.769 5 O -0.192 6.192 6 C -0.141 4.141 7 C 0.613 3.387 8 O -0.537 6.537 9 N -0.708 5.708 10 C 0.110 3.890 11 C 0.111 3.889 12 O -0.534 6.534 13 C -0.007 4.007 14 N -0.475 5.475 15 C 0.019 3.981 16 C 0.440 3.560 17 O -0.619 6.619 18 N -0.574 5.574 19 C -0.334 4.334 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.271 1.271 27 C 0.023 3.977 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.307 0.693 32 H 0.412 0.588 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.387 0.613 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.108 0.892 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.756 17.379 15.578 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 N -0.256 5.256 4 C 0.007 3.993 5 O -0.079 6.079 6 C -0.196 4.196 7 C 0.399 3.601 8 O -0.417 6.417 9 N -0.360 5.360 10 C -0.014 4.014 11 C 0.068 3.932 12 O -0.341 6.341 13 C -0.136 4.136 14 N -0.198 5.198 15 C -0.112 4.112 16 C 0.227 3.773 17 O -0.505 6.505 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.096 0.904 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.196 1.196 27 C -0.105 4.105 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.322 0.678 32 H 0.249 0.751 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.237 0.763 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.128 0.872 39 H 0.101 0.899 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.126 0.874 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.557 17.157 15.861 24.883 hybrid contribution 0.527 -0.068 -1.478 1.571 sum -8.030 17.089 14.383 23.735 Atomic orbital electron populations 1.20420 0.84769 1.04405 1.04245 1.22398 0.99198 0.86731 0.96652 1.70409 1.02573 1.31490 1.21116 1.29590 0.98224 0.78973 0.92549 1.84501 1.28596 1.25432 1.69323 1.22641 0.82339 0.95804 1.18803 1.16314 0.85428 0.81792 0.76534 1.90861 1.16634 1.82408 1.51768 1.45679 1.10241 1.05929 1.74191 1.22058 0.96248 0.78506 1.04596 1.22755 0.88170 0.95582 0.86657 1.86609 1.64407 1.32007 1.51096 1.24518 1.00968 0.91066 0.97094 1.68453 1.36592 1.04645 1.10094 1.22412 0.95774 1.01653 0.91376 1.20743 0.89327 0.83446 0.83788 1.90490 1.36525 1.43607 1.79898 1.41941 1.22733 1.41731 1.14722 1.19600 1.02982 1.27177 0.96581 0.90441 1.26031 1.00035 0.95387 0.99786 1.69656 1.30384 1.28924 1.27092 0.85009 0.77823 0.78480 0.77152 1.19782 1.19418 1.19648 1.24260 0.94771 0.92801 0.98715 0.89118 0.89464 0.89627 0.67802 0.75116 0.88719 0.89410 0.76316 0.90728 0.90916 0.87150 0.89945 0.76974 0.91254 0.87386 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 9.87 71.24 0.70 -0.66 16 2 C 0.07 1.44 7.16 41.83 0.30 1.74 16 3 N -0.53 -9.18 11.26 -303.13 -3.41 -12.60 16 4 C 0.23 2.41 13.21 130.42 1.72 4.13 16 5 O -0.19 -2.79 10.57 -6.97 -0.07 -2.86 16 6 C -0.14 -2.69 7.18 24.05 0.17 -2.51 16 7 C 0.61 12.58 7.79 86.46 0.67 13.25 16 8 O -0.54 -13.54 14.79 -4.29 -0.06 -13.60 16 9 N -0.71 -11.61 5.33 -467.03 -2.49 -14.10 16 10 C 0.11 1.83 5.28 86.38 0.46 2.29 16 11 C 0.11 2.26 1.52 -10.15 -0.02 2.24 16 12 O -0.53 -11.30 13.50 -148.98 -2.01 -13.31 16 13 C -0.01 -0.20 6.16 86.40 0.53 0.33 16 14 N -0.47 -15.02 5.95 -915.22 -5.44 -20.46 16 15 C 0.02 0.65 5.31 85.56 0.45 1.11 16 16 C 0.44 20.91 7.59 87.66 0.67 21.57 16 17 O -0.62 -34.35 15.13 -3.07 -0.05 -34.40 16 18 N -0.57 -29.44 5.29 -306.99 -1.62 -31.07 16 19 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16 20 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.55 13.05 21.66 0.28 -49.27 16 23 Si 0.99 42.90 29.55 68.60 2.03 44.92 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 27 C 0.02 0.49 7.37 86.40 0.64 1.13 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.61 6.47 -2.39 -0.02 1.60 16 31 H 0.31 -0.59 8.06 -2.91 -0.02 -0.61 16 32 H 0.41 5.44 7.10 -92.71 -0.66 4.78 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.51 8.05 -2.38 -0.02 1.49 16 35 H 0.39 5.28 7.61 -74.06 -0.56 4.71 16 36 H 0.07 2.09 7.67 -2.39 -0.02 2.07 16 37 H 0.07 2.44 8.09 -2.39 -0.02 2.42 16 38 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 39 H 0.08 2.32 7.69 -2.39 -0.02 2.30 16 40 H 0.40 19.23 7.90 -92.71 -0.73 18.50 16 41 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 42 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.11 1.77 7.75 -2.38 -0.02 1.75 16 Total: -1.00 -80.01 371.92 -6.13 -86.14 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: -0.85 Total: 34.37 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 7.58 Total: 26.23 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -12.69 Total: -127.49 kcal Atomic # 8 Polarization: -61.98 SS G_CDS: -2.20 Total: -64.18 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -80.01 -6.13 -86.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271269360.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.722 kcal (2) G-P(sol) polarization free energy of solvation -80.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds