Wall clock time and date at job start Tue Mar 31 2020 21:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38263 * 119.95058 * 2 1 4 4 C 1.38260 * 120.12775 * 180.02562 * 3 2 1 5 5 C 1.38331 * 120.02743 * 0.02562 * 4 3 2 6 6 F 1.35098 * 120.04590 * 179.97438 * 5 4 3 7 7 C 1.38909 * 119.90443 * 359.97438 * 5 4 3 8 8 O 1.35955 * 120.06171 * 179.97438 * 7 5 4 9 9 C 1.42897 * 117.00115 * 180.02562 * 8 7 5 10 10 C 1.50696 * 109.47104 * 179.97438 * 9 8 7 11 11 O 1.21281 * 120.00308 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00266 * 179.97438 * 10 9 8 13 13 C 1.46498 * 120.00147 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.46880 * 180.02562 * 13 12 10 15 15 O 1.42895 * 113.41757 * 51.79937 * 14 13 12 16 16 C 1.53492 * 114.20662 * 185.00239 * 14 13 12 17 17 N 1.47069 * 87.98838 * 87.51493 * 16 14 13 18 18 C 1.36936 * 136.06301 * 207.07784 * 17 16 14 19 19 H 1.08006 * 119.99418 * 7.84113 * 18 17 16 20 20 C 1.38804 * 120.00212 * 187.83009 * 18 17 16 21 21 N 1.31623 * 119.99983 * 195.04824 * 20 18 17 22 22 Si 1.86806 * 120.00036 * 15.33279 * 20 18 17 23 23 H 1.48501 * 109.46966 * 269.72008 * 22 20 18 24 24 H 1.48499 * 109.46852 * 29.72057 * 22 20 18 25 25 H 1.48499 * 109.47257 * 149.71952 * 22 20 18 26 26 C 1.47077 * 87.88174 * 27.34535 * 17 16 14 27 27 C 1.38178 * 119.95674 * 180.25976 * 2 1 3 28 28 H 1.09002 * 109.47258 * 89.99809 * 1 2 3 29 29 H 1.08997 * 109.46800 * 209.99769 * 1 2 3 30 30 H 1.08993 * 109.47306 * 329.99861 * 1 2 3 31 31 H 1.08010 * 119.93748 * 359.97438 * 3 2 1 32 32 H 1.07994 * 119.98047 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.46872 * 60.00458 * 9 8 7 34 34 H 1.08998 * 109.47249 * 300.00459 * 9 8 7 35 35 H 0.96999 * 119.99607 * 0.02562 * 12 10 9 36 36 H 1.08996 * 109.46773 * 60.00671 * 13 12 10 37 37 H 1.09001 * 109.47203 * 300.00143 * 13 12 10 38 38 H 0.96704 * 114.00313 * 313.20208 * 15 14 13 39 39 H 1.08997 * 113.46930 * 332.74017 * 16 14 13 40 40 H 1.09004 * 113.52079 * 202.30454 * 16 14 13 41 41 H 0.96999 * 120.00066 * 355.19588 * 21 20 18 42 42 H 1.08999 * 113.46528 * 87.43645 * 26 17 16 43 43 H 1.08996 * 113.46472 * 217.87933 * 26 17 16 44 44 H 1.07998 * 120.01125 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1980 0.0000 4 6 3.5799 1.2023 -0.0005 5 6 4.2758 0.0068 -0.0016 6 9 5.6268 0.0105 -0.0027 7 6 3.5836 -1.1975 -0.0016 8 8 4.2643 -2.3744 -0.0032 9 6 3.4870 -3.5735 -0.0037 10 6 4.4060 -4.7678 -0.0061 11 8 5.6083 -4.6079 -0.0068 12 7 3.8920 -6.0137 -0.0064 13 6 4.7854 -7.1747 -0.0081 14 6 3.9532 -8.4586 -0.0088 15 8 2.9630 -8.4931 -1.0385 16 6 4.7812 -9.7455 0.1114 17 7 4.7004 -9.5993 1.5726 18 6 5.4651 -9.9743 2.6449 19 1 6.4414 -10.4082 2.4864 20 6 4.9858 -9.7965 3.9353 21 7 5.8091 -9.8718 4.9595 22 14 3.1706 -9.4582 4.2191 23 1 2.9315 -7.9927 4.2009 24 1 2.3732 -10.1033 3.1453 25 1 2.7644 -10.0098 5.5367 26 6 3.4333 -8.8791 1.3759 27 6 2.1970 -1.1972 -0.0054 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6554 2.1323 -0.0004 32 1 4.1166 2.1394 -0.0001 33 1 2.8576 -3.5981 -0.8933 34 1 2.8589 -3.5997 0.8867 35 1 2.9305 -6.1416 -0.0054 36 1 5.4150 -7.1500 0.8812 37 1 5.4133 -7.1487 -0.8988 38 1 2.4431 -7.6810 -1.1117 39 1 5.7941 -9.6480 -0.2791 40 1 4.2676 -10.6300 -0.2654 41 1 6.7363 -10.1201 4.8192 42 1 2.5636 -9.5347 1.3322 43 1 3.2979 -8.0434 2.0624 44 1 1.6565 -2.1322 -0.0092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271282231.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:49 Heat of formation + Delta-G solvation = -70.986968 kcal Electronic energy + Delta-G solvation = -28737.512168 eV Core-core repulsion = 24379.489763 eV Total energy + Delta-G solvation = -4358.022406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.95811 -40.73606 -39.97772 -39.01208 -37.80114 -35.46448 -34.30009 -32.82262 -32.33415 -30.88544 -29.68366 -28.14199 -26.97452 -25.83842 -25.51471 -23.20392 -22.05411 -21.83881 -20.79746 -19.35727 -18.58818 -18.16468 -17.51146 -17.34717 -17.01720 -16.86260 -16.38323 -15.86998 -15.69490 -15.13182 -14.92061 -14.79853 -14.67189 -14.45935 -14.08783 -13.87050 -13.76813 -13.59699 -13.38756 -13.16468 -13.01910 -12.45596 -12.40894 -12.12802 -12.04360 -12.03084 -11.78505 -11.58497 -11.35196 -11.19535 -10.74889 -10.45697 -10.11442 -9.97223 -9.43441 -9.26924 -9.25747 -9.07728 -8.79498 -8.51020 -7.30333 -6.38608 -3.32255 0.69625 0.84569 2.18502 2.42732 3.12154 3.28799 3.31567 3.40792 3.55057 3.91261 4.12733 4.20341 4.31465 4.40963 4.51611 4.52192 4.64917 4.67687 4.70712 4.73922 4.74550 4.91668 5.01655 5.13820 5.14382 5.36919 5.39163 5.54830 5.60744 5.64868 5.78386 5.97788 6.02797 6.09313 6.13389 6.17285 6.21011 6.23586 6.30697 6.54988 6.85117 6.97013 7.24130 7.68047 8.03048 8.17208 8.89320 9.41167 10.24511 11.11727 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.002451 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.898486 B =11422.331214 C =11501.454283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.056 4.056 3 C -0.132 4.132 4 C -0.112 4.112 5 C 0.067 3.933 6 F -0.129 7.129 7 C 0.104 3.896 8 O -0.280 6.280 9 C 0.040 3.960 10 C 0.516 3.484 11 O -0.507 6.507 12 N -0.724 5.724 13 C 0.126 3.874 14 C 0.066 3.934 15 O -0.545 6.545 16 C 0.139 3.861 17 N -0.615 5.615 18 C -0.306 4.306 19 H 0.086 0.914 20 C -0.021 4.021 21 N -0.927 5.927 22 Si 1.061 2.939 23 H -0.294 1.294 24 H -0.281 1.281 25 H -0.293 1.293 26 C 0.081 3.919 27 C -0.187 4.187 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.134 0.866 32 H 0.143 0.857 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.396 0.604 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.364 0.636 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.263 0.737 42 H 0.056 0.944 43 H 0.053 0.947 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.342 21.327 -13.759 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.057 4.057 3 C -0.150 4.150 4 C -0.130 4.130 5 C 0.047 3.953 6 F -0.108 7.108 7 C 0.057 3.943 8 O -0.192 6.192 9 C -0.038 4.038 10 C 0.299 3.701 11 O -0.381 6.381 12 N -0.379 5.379 13 C 0.003 3.997 14 C 0.023 3.977 15 O -0.349 6.349 16 C 0.012 3.988 17 N -0.345 5.345 18 C -0.432 4.432 19 H 0.103 0.897 20 C -0.221 4.221 21 N -0.568 5.568 22 Si 0.893 3.107 23 H -0.222 1.222 24 H -0.207 1.207 25 H -0.221 1.221 26 C -0.045 4.045 27 C -0.205 4.205 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.152 0.848 32 H 0.161 0.839 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.230 0.770 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.210 0.790 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.866 21.041 -12.462 28.112 hybrid contribution 0.405 -0.135 -1.002 1.090 sum -13.460 20.906 -13.464 28.276 Atomic orbital electron populations 1.20827 0.90311 1.03345 1.02781 1.19778 0.96549 0.92200 0.97130 1.20825 0.92926 0.98112 1.03117 1.21026 0.94874 0.96352 1.00789 1.17002 0.77472 0.91675 1.09152 1.91539 1.27919 1.97166 1.94139 1.19053 0.91050 0.85307 0.98898 1.86246 1.33627 1.10974 1.88307 1.22547 0.93919 0.83243 1.04117 1.19846 0.89132 0.83584 0.77501 1.90804 1.15009 1.85425 1.46846 1.45722 1.10466 1.05452 1.76284 1.21630 0.92243 0.81341 1.04468 1.23675 0.90173 0.95762 0.88048 1.86622 1.50712 1.41209 1.56319 1.22299 0.97061 0.92676 0.86746 1.45921 1.21857 1.65354 1.01394 1.20101 0.97574 1.42056 0.83479 0.89665 1.25786 1.06334 0.99477 0.90493 1.70893 1.06230 1.48353 1.31364 0.83796 0.75598 0.76018 0.75330 1.22222 1.20733 1.22072 1.23389 0.91843 0.95888 0.93361 1.21053 0.91568 0.99705 1.08200 0.90649 0.91132 0.91029 0.84802 0.83903 0.88624 0.88480 0.76951 0.88291 0.90442 0.78995 0.92631 0.93094 0.92625 0.92643 0.92909 0.84344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.48 10.01 36.01 0.36 -0.12 16 2 C -0.06 -0.38 5.88 -104.63 -0.62 -1.00 16 3 C -0.13 -0.88 9.69 -39.56 -0.38 -1.26 16 4 C -0.11 -0.92 10.02 -39.54 -0.40 -1.32 16 5 C 0.07 0.77 7.31 -39.30 -0.29 0.49 16 6 F -0.13 -1.80 17.11 2.25 0.04 -1.76 16 7 C 0.10 1.17 6.69 -39.18 -0.26 0.91 16 8 O -0.28 -3.77 9.53 -39.51 -0.38 -4.15 16 9 C 0.04 0.40 5.22 36.00 0.19 0.58 16 10 C 0.52 7.14 7.91 -10.99 -0.09 7.06 16 11 O -0.51 -9.79 16.50 -14.35 -0.24 -10.03 16 12 N -0.72 -8.72 5.32 -60.29 -0.32 -9.04 16 13 C 0.13 1.98 5.33 -4.04 -0.02 1.96 16 14 C 0.07 1.07 1.74 -89.97 -0.16 0.91 16 15 O -0.55 -7.36 13.56 -35.23 -0.48 -7.84 16 16 C 0.14 2.70 8.10 -8.50 -0.07 2.64 16 17 N -0.62 -14.64 3.40 -184.56 -0.63 -15.27 16 18 C -0.31 -8.65 11.03 -15.06 -0.17 -8.81 16 19 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 20 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 21 N -0.93 -29.04 13.70 55.49 0.76 -28.28 16 22 Si 1.06 25.96 25.51 -169.99 -4.34 21.62 16 23 H -0.29 -6.84 6.97 56.52 0.39 -6.45 16 24 H -0.28 -6.35 5.65 56.52 0.32 -6.03 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 C 0.08 1.62 5.03 -8.36 -0.04 1.57 16 27 C -0.19 -1.50 8.69 -39.45 -0.34 -1.85 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.07 0.23 8.08 -51.93 -0.42 -0.19 16 31 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 32 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.10 0.58 7.65 -51.93 -0.40 0.18 16 34 H 0.10 0.71 7.67 -51.93 -0.40 0.31 16 35 H 0.40 3.18 7.24 -40.82 -0.30 2.88 16 36 H 0.10 1.95 7.94 -51.93 -0.41 1.53 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.36 3.15 7.50 45.56 0.34 3.49 16 39 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.26 8.16 8.73 -40.82 -0.36 7.81 16 42 H 0.06 1.11 7.02 -51.93 -0.36 0.74 16 43 H 0.05 1.06 6.22 -51.93 -0.32 0.74 16 44 H 0.14 0.77 6.30 -52.49 -0.33 0.43 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -37.68 371.68 -7.57 -45.25 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.22 Total: 2.87 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -2.38 Total: 1.04 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.19 Total: -52.59 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -1.09 Total: -22.02 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -4.34 Total: 21.62 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.68 -7.57 -45.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271282231.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.734 kcal (2) G-P(sol) polarization free energy of solvation -37.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds