Wall clock time and date at job start Tue Mar 31 2020 20:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86807 * 119.99943 * 2 1 4 4 H 1.48500 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47249 * 300.00329 * 3 2 1 6 6 H 1.48496 * 109.47136 * 60.00497 * 3 2 1 7 7 C 1.38952 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99962 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99881 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99957 * 359.73039 * 10 9 7 12 12 C 1.50705 * 120.00009 * 179.72595 * 10 9 7 13 13 N 1.46903 * 109.46928 * 174.45860 * 12 10 9 14 14 C 1.47003 * 111.00027 * 300.98679 * 13 12 10 15 15 C 1.53098 * 109.25801 * 182.39564 * 14 13 12 16 16 O 1.43025 * 109.25507 * 303.15123 * 15 14 13 17 17 C 1.43016 * 113.73806 * 58.66833 * 16 15 14 18 18 C 1.47011 * 110.99675 * 64.62425 * 13 12 10 19 19 H 1.09001 * 109.50873 * 297.53400 * 18 13 12 20 20 C 1.52997 * 109.51355 * 57.67013 * 18 13 12 21 21 N 1.46504 * 109.46809 * 54.42952 * 20 18 13 22 22 C 1.34778 * 119.99885 * 174.95018 * 21 20 18 23 23 O 1.21501 * 120.00003 * 0.02562 * 22 21 20 24 24 C 1.48328 * 119.99823 * 180.02562 * 22 21 20 25 25 C 1.42276 * 126.93568 * 179.70988 * 24 22 21 26 26 C 1.35317 * 103.92050 * 179.91023 * 25 24 22 27 27 O 1.34016 * 106.66764 * 0.34980 * 26 25 24 28 28 N 1.20901 * 111.84657 * 359.75626 * 27 26 25 29 29 H 0.97009 * 120.00279 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00518 * 359.73371 * 9 7 2 31 31 H 1.08993 * 109.46975 * 294.45941 * 12 10 9 32 32 H 1.08997 * 109.47095 * 54.45921 * 12 10 9 33 33 H 1.09007 * 109.51129 * 302.32822 * 14 13 12 34 34 H 1.08998 * 109.51042 * 62.46202 * 14 13 12 35 35 H 1.09000 * 109.51085 * 183.21606 * 15 14 13 36 36 H 1.09000 * 109.54410 * 63.10420 * 15 14 13 37 37 H 1.08998 * 109.50239 * 181.39438 * 17 16 15 38 38 H 1.08999 * 109.53938 * 61.28856 * 17 16 15 39 39 H 1.08996 * 109.47625 * 174.43230 * 20 18 13 40 40 H 1.09002 * 109.46785 * 294.43840 * 20 18 13 41 41 H 0.97000 * 120.00017 * 354.94921 * 21 20 18 42 42 H 1.07999 * 128.04000 * 0.03092 * 25 24 22 43 43 H 1.08005 * 126.66453 * 180.12785 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3966 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0055 12 6 1.2437 -4.8629 0.0057 13 7 2.1922 -5.9766 -0.1293 14 6 2.9651 -5.8623 -1.3745 15 6 3.8958 -7.0710 -1.5039 16 8 4.7369 -7.1443 -0.3494 17 6 4.0168 -7.2569 0.8812 18 6 3.0873 -6.0502 1.0346 19 1 3.6816 -5.1384 1.0949 20 6 2.2560 -6.2046 2.3097 21 7 1.3625 -7.3575 2.1734 22 6 0.6046 -7.7497 3.2166 23 8 0.6621 -7.1469 4.2699 24 6 -0.2997 -8.9174 3.0787 25 6 -1.1548 -9.4593 4.0784 26 6 -1.7603 -10.4995 3.4600 27 8 -1.2739 -10.5406 2.2119 28 7 -0.4680 -9.6614 2.0139 29 1 -0.4851 0.8401 0.0004 30 1 0.3533 -2.3907 0.0037 31 1 0.6975 -4.9626 0.9436 32 1 0.5413 -4.8809 -0.8275 33 1 2.2836 -5.8351 -2.2248 34 1 3.5574 -4.9476 -1.3527 35 1 4.5118 -6.9622 -2.3966 36 1 3.3021 -7.9819 -1.5802 37 1 4.7203 -7.2827 1.7133 38 1 3.4262 -8.1730 0.8754 39 1 2.9202 -6.3582 3.1601 40 1 1.6642 -5.3031 2.4689 41 1 1.3163 -7.8386 1.3323 42 1 -1.2908 -9.1182 5.0941 43 1 -2.4906 -11.1690 3.8900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280397008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:14 Heat of formation + Delta-G solvation = -30.919337 kcal Electronic energy + Delta-G solvation = -30055.640492 eV Core-core repulsion = 25719.275511 eV Total energy + Delta-G solvation = -4336.364981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.34859 -40.36643 -39.29733 -37.97646 -35.80891 -34.56130 -34.22586 -33.69626 -32.19864 -31.41381 -31.15521 -29.00874 -26.99335 -25.51675 -24.57246 -23.74820 -23.25167 -22.39471 -20.83625 -20.01653 -19.20689 -18.77078 -18.00874 -17.91145 -17.07488 -16.54249 -16.30333 -16.09818 -15.70059 -15.16038 -14.90436 -14.74822 -14.72019 -14.35968 -14.09691 -13.97093 -13.78726 -13.70977 -13.42496 -13.18715 -12.74088 -12.03618 -11.96100 -11.91333 -11.60212 -11.58824 -11.26096 -11.00217 -10.72491 -10.70628 -10.44300 -10.40002 -10.36201 -10.29483 -10.07530 -9.60363 -9.55338 -9.32698 -9.04645 -8.07496 -7.59789 -6.52067 -3.93588 0.90829 1.43866 2.74007 2.96003 3.05469 3.08838 3.21271 3.28001 3.71404 3.76812 3.95352 4.06907 4.09788 4.42942 4.74471 4.83775 4.89704 4.95738 5.01692 5.12621 5.16391 5.23202 5.34132 5.47349 5.52245 5.55981 5.63900 5.75018 5.80286 5.83123 5.96884 6.04169 6.09134 6.21709 6.43653 6.58072 7.09378 7.14155 7.27566 7.35980 7.45344 7.75687 7.93532 8.02487 8.47119 9.05792 9.40786 9.90292 10.64315 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011969 B = 0.003157 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.789660 B = 8865.700045 C =10295.348613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.104 0.896 9 N -0.552 5.552 10 C 0.404 3.596 11 O -0.593 6.593 12 C 0.036 3.964 13 N -0.508 5.508 14 C -0.001 4.001 15 C 0.068 3.932 16 O -0.381 6.381 17 C 0.075 3.925 18 C 0.016 3.984 19 H 0.114 0.886 20 C 0.127 3.873 21 N -0.698 5.698 22 C 0.592 3.408 23 O -0.526 6.526 24 C -0.025 4.025 25 C -0.185 4.185 26 C -0.062 4.062 27 O 0.121 5.879 28 N -0.329 5.329 29 H 0.273 0.727 30 H 0.393 0.607 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.414 0.586 42 H 0.181 0.819 43 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.533 -20.698 3.573 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.433 4.433 8 H 0.122 0.878 9 N -0.186 5.186 10 C 0.189 3.811 11 O -0.480 6.480 12 C -0.096 4.096 13 N -0.232 5.232 14 C -0.129 4.129 15 C -0.009 4.009 16 O -0.300 6.300 17 C -0.003 4.003 18 C -0.092 4.092 19 H 0.132 0.868 20 C 0.004 3.996 21 N -0.351 5.351 22 C 0.375 3.625 23 O -0.401 6.401 24 C -0.185 4.185 25 C -0.207 4.207 26 C -0.143 4.143 27 O 0.045 5.955 28 N -0.029 5.029 29 H 0.083 0.917 30 H 0.226 0.774 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.251 0.749 42 H 0.198 0.802 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -2.295 -20.427 3.051 20.780 hybrid contribution -0.627 1.626 0.518 1.819 sum -2.922 -18.800 3.569 19.358 Atomic orbital electron populations 1.69616 1.06014 1.28332 1.49658 1.25309 0.95626 0.99915 0.96886 0.85798 0.79729 0.81000 0.77824 1.19174 1.20650 1.20610 1.19768 0.93434 0.82276 1.47817 0.87807 1.42057 1.09336 1.04965 1.62272 1.20944 0.88790 0.85848 0.85479 1.90412 1.13760 1.86728 1.57125 1.22116 0.95485 0.88368 1.03621 1.62706 1.17541 1.40752 1.02219 1.23036 0.97278 1.00608 0.91929 1.22636 0.92845 0.96976 0.88464 1.87978 1.33182 1.94416 1.14392 1.22611 0.94460 0.95989 0.87193 1.22915 0.94646 1.01916 0.89768 0.86845 1.21522 0.92257 0.88351 0.97499 1.45848 1.41828 1.32397 1.14988 1.16916 0.79476 0.81762 0.84324 1.90820 1.66637 1.54923 1.27769 1.23668 1.02999 1.00320 0.91489 1.22802 0.98363 0.97155 1.02415 1.26054 1.02271 1.01460 0.84483 1.84807 1.41003 1.39761 1.29909 1.74212 1.06417 0.99662 1.22633 0.91717 0.77382 0.89095 0.89159 0.90534 0.89226 0.88869 0.93143 0.88784 0.93248 0.90255 0.90503 0.74898 0.80175 0.75959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.00 13.05 55.50 0.72 -23.28 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.23 9.68 -14.94 -0.14 -8.37 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -13.50 5.29 -10.96 -0.06 -13.56 16 10 C 0.40 8.90 7.16 -10.98 -0.08 8.82 16 11 O -0.59 -14.60 11.16 5.54 0.06 -14.54 16 12 C 0.04 0.61 5.55 -4.97 -0.03 0.58 16 13 N -0.51 -7.78 4.09 -227.78 -0.93 -8.71 16 14 C 0.00 -0.01 5.25 -3.72 -0.02 -0.03 16 15 C 0.07 0.91 7.01 37.21 0.26 1.18 16 16 O -0.38 -5.88 10.83 -35.23 -0.38 -6.26 16 17 C 0.07 1.02 6.20 37.21 0.23 1.25 16 18 C 0.02 0.25 1.91 -67.60 -0.13 0.12 16 19 H 0.11 2.19 5.62 -51.93 -0.29 1.90 16 20 C 0.13 1.84 4.68 -4.04 -0.02 1.82 16 21 N -0.70 -9.26 5.04 -61.09 -0.31 -9.57 16 22 C 0.59 8.42 7.85 -12.11 -0.10 8.32 16 23 O -0.53 -8.98 16.95 5.37 0.09 -8.89 16 24 C -0.03 -0.30 7.19 -82.53 -0.59 -0.90 16 25 C -0.18 -1.62 10.99 -39.07 -0.43 -2.05 16 26 C -0.06 -0.37 12.28 29.69 0.36 0.00 16 27 O 0.12 1.06 11.18 17.25 0.19 1.25 16 28 N -0.33 -3.73 11.84 33.29 0.39 -3.33 16 29 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 31 H 0.09 1.49 6.14 -51.93 -0.32 1.18 16 32 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.76 5.54 -51.93 -0.29 1.47 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.05 0.61 7.25 -51.93 -0.38 0.24 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.26 6.59 -51.93 -0.34 0.92 16 41 H 0.41 5.25 7.18 -40.82 -0.29 4.96 16 42 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 43 H 0.22 0.19 8.06 -52.48 -0.42 -0.23 16 LS Contribution 358.20 15.07 5.40 5.40 Total: -1.00 -32.35 358.20 -5.74 -38.10 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -5.13 Total: 16.32 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -0.78 Total: 11.32 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: -0.18 Total: -58.45 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.04 Total: -28.43 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.35 -5.74 -38.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280397008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.176 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds