Wall clock time and date at job start Tue Mar 31 2020 20:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86807 * 119.99943 * 2 1 4 4 H 1.48500 * 109.46889 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47249 * 300.00329 * 3 2 1 6 6 H 1.48496 * 109.47136 * 60.00497 * 3 2 1 7 7 C 1.38952 * 120.00009 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99962 * 179.97438 * 7 2 1 9 9 N 1.37091 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99881 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99957 * 359.73039 * 10 9 7 12 12 C 1.50705 * 120.00009 * 179.72595 * 10 9 7 13 13 N 1.46903 * 109.46928 * 174.45860 * 12 10 9 14 14 C 1.47003 * 111.00027 * 300.98679 * 13 12 10 15 15 C 1.53098 * 109.25801 * 182.39564 * 14 13 12 16 16 O 1.43025 * 109.25507 * 303.15123 * 15 14 13 17 17 C 1.43016 * 113.73806 * 58.66833 * 16 15 14 18 18 C 1.47011 * 110.99675 * 64.62425 * 13 12 10 19 19 H 1.09001 * 109.50873 * 297.53400 * 18 13 12 20 20 C 1.52997 * 109.51355 * 57.67013 * 18 13 12 21 21 N 1.46504 * 109.46809 * 54.42952 * 20 18 13 22 22 C 1.34778 * 119.99885 * 174.95018 * 21 20 18 23 23 O 1.21501 * 120.00003 * 0.02562 * 22 21 20 24 24 C 1.48328 * 119.99823 * 180.02562 * 22 21 20 25 25 C 1.42276 * 126.93568 * 179.70988 * 24 22 21 26 26 C 1.35317 * 103.92050 * 179.91023 * 25 24 22 27 27 O 1.34016 * 106.66764 * 0.34980 * 26 25 24 28 28 N 1.20901 * 111.84657 * 359.75626 * 27 26 25 29 29 H 0.97009 * 120.00279 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00518 * 359.73371 * 9 7 2 31 31 H 1.08993 * 109.46975 * 294.45941 * 12 10 9 32 32 H 1.08997 * 109.47095 * 54.45921 * 12 10 9 33 33 H 1.09007 * 109.51129 * 302.32822 * 14 13 12 34 34 H 1.08998 * 109.51042 * 62.46202 * 14 13 12 35 35 H 1.09000 * 109.51085 * 183.21606 * 15 14 13 36 36 H 1.09000 * 109.54410 * 63.10420 * 15 14 13 37 37 H 1.08998 * 109.50239 * 181.39438 * 17 16 15 38 38 H 1.08999 * 109.53938 * 61.28856 * 17 16 15 39 39 H 1.08996 * 109.47625 * 174.43230 * 20 18 13 40 40 H 1.09002 * 109.46785 * 294.43840 * 20 18 13 41 41 H 0.97000 * 120.00017 * 354.94921 * 21 20 18 42 42 H 1.07999 * 128.04000 * 0.03092 * 25 24 22 43 43 H 1.08005 * 126.66453 * 180.12785 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3966 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0055 12 6 1.2437 -4.8629 0.0057 13 7 2.1922 -5.9766 -0.1293 14 6 2.9651 -5.8623 -1.3745 15 6 3.8958 -7.0710 -1.5039 16 8 4.7369 -7.1443 -0.3494 17 6 4.0168 -7.2569 0.8812 18 6 3.0873 -6.0502 1.0346 19 1 3.6816 -5.1384 1.0949 20 6 2.2560 -6.2046 2.3097 21 7 1.3625 -7.3575 2.1734 22 6 0.6046 -7.7497 3.2166 23 8 0.6621 -7.1469 4.2699 24 6 -0.2997 -8.9174 3.0787 25 6 -1.1548 -9.4593 4.0784 26 6 -1.7603 -10.4995 3.4600 27 8 -1.2739 -10.5406 2.2119 28 7 -0.4680 -9.6614 2.0139 29 1 -0.4851 0.8401 0.0004 30 1 0.3533 -2.3907 0.0037 31 1 0.6975 -4.9626 0.9436 32 1 0.5413 -4.8809 -0.8275 33 1 2.2836 -5.8351 -2.2248 34 1 3.5574 -4.9476 -1.3527 35 1 4.5118 -6.9622 -2.3966 36 1 3.3021 -7.9819 -1.5802 37 1 4.7203 -7.2827 1.7133 38 1 3.4262 -8.1730 0.8754 39 1 2.9202 -6.3582 3.1601 40 1 1.6642 -5.3031 2.4689 41 1 1.3163 -7.8386 1.3323 42 1 -1.2908 -9.1182 5.0941 43 1 -2.4906 -11.1690 3.8900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280397008.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:13 Heat of formation + Delta-G solvation = -58.106393 kcal Electronic energy + Delta-G solvation = -30056.819411 eV Core-core repulsion = 25719.275511 eV Total energy + Delta-G solvation = -4337.543900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.08080 -41.70575 -40.55047 -39.55403 -37.12353 -36.15676 -35.34493 -34.96048 -33.38822 -32.96813 -32.23750 -30.42986 -28.19262 -27.19963 -25.55592 -25.30880 -23.94260 -23.57172 -21.87413 -21.46086 -20.79477 -19.88669 -19.52433 -18.75598 -18.02534 -17.84870 -17.73544 -17.52854 -16.86426 -16.60629 -16.33172 -15.96687 -15.87197 -15.82611 -15.63743 -15.32488 -15.22643 -14.75312 -14.59496 -14.19560 -14.04372 -13.62273 -13.36970 -13.22276 -13.02516 -12.86409 -12.70383 -12.47758 -12.34712 -12.17176 -12.03563 -11.58834 -11.54322 -11.49907 -11.39075 -11.11893 -10.70890 -10.67946 -10.22527 -10.05338 -9.18377 -8.51968 -6.01765 0.10714 0.82259 1.30518 1.37347 1.50918 1.78485 1.93991 2.03877 2.24330 2.35933 2.68886 2.88503 2.94696 3.13860 3.16138 3.63366 3.69593 3.76454 3.96332 4.06746 4.18629 4.25689 4.27252 4.29990 4.40846 4.43330 4.53777 4.54943 4.60309 4.67611 4.71640 4.86610 4.95860 5.02119 5.15472 5.22197 5.36223 5.70234 5.82277 5.94092 6.15415 6.28650 6.51012 6.90167 7.05431 7.10835 7.47337 8.01266 8.63914 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011969 B = 0.003157 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.789660 B = 8865.700045 C =10295.348613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.332 4.332 8 H 0.079 0.921 9 N -0.567 5.567 10 C 0.409 3.591 11 O -0.617 6.617 12 C 0.047 3.953 13 N -0.490 5.490 14 C -0.001 4.001 15 C 0.070 3.930 16 O -0.400 6.400 17 C 0.078 3.922 18 C 0.023 3.977 19 H 0.073 0.927 20 C 0.137 3.863 21 N -0.688 5.688 22 C 0.592 3.408 23 O -0.563 6.563 24 C -0.055 4.055 25 C -0.206 4.206 26 C -0.025 4.025 27 O 0.129 5.871 28 N -0.347 5.347 29 H 0.278 0.722 30 H 0.395 0.605 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.110 0.890 36 H 0.075 0.925 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.054 0.946 41 H 0.419 0.581 42 H 0.189 0.811 43 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 -23.143 3.445 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.211 4.211 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.203 5.203 10 C 0.196 3.804 11 O -0.505 6.505 12 C -0.085 4.085 13 N -0.214 5.214 14 C -0.129 4.129 15 C -0.007 4.007 16 O -0.319 6.319 17 C 0.001 3.999 18 C -0.086 4.086 19 H 0.090 0.910 20 C 0.013 3.987 21 N -0.341 5.341 22 C 0.377 3.623 23 O -0.441 6.441 24 C -0.213 4.213 25 C -0.229 4.229 26 C -0.105 4.105 27 O 0.051 5.949 28 N -0.046 5.046 29 H 0.088 0.912 30 H 0.228 0.772 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.128 0.872 36 H 0.093 0.907 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.257 0.743 42 H 0.206 0.794 43 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -3.609 -22.889 2.896 23.352 hybrid contribution -0.236 2.230 0.566 2.313 sum -3.845 -20.659 3.462 21.297 Atomic orbital electron populations 1.69674 1.06859 1.29330 1.49956 1.26041 0.96496 1.02472 0.96137 0.84898 0.78018 0.77224 0.78371 1.19857 1.19488 1.19668 1.19671 0.92626 0.84042 1.49857 0.90329 1.42125 1.09333 1.05064 1.63785 1.21923 0.88713 0.86895 0.82898 1.90429 1.15363 1.87475 1.57269 1.22132 0.95610 0.85769 1.04954 1.62799 1.17255 1.38925 1.02381 1.23044 0.97508 0.99943 0.92374 1.22764 0.92760 0.96649 0.88479 1.87960 1.34273 1.94417 1.15241 1.22678 0.94465 0.95489 0.87235 1.22764 0.94587 1.01192 0.90070 0.90963 1.21283 0.92115 0.88082 0.97248 1.45710 1.41451 1.31745 1.15171 1.17251 0.79329 0.82092 0.83670 1.90792 1.67866 1.56364 1.29029 1.23518 1.04135 1.00408 0.93206 1.23062 0.98798 0.98330 1.02728 1.26960 1.00823 1.00259 0.82429 1.84772 1.40196 1.38680 1.31272 1.74216 1.07414 1.00223 1.22750 0.91227 0.77173 0.88241 0.86979 0.88881 0.93565 0.87248 0.90684 0.87602 0.91281 0.89707 0.92802 0.74300 0.79372 0.70595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.62 13.05 21.66 0.28 -49.34 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 8 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -28.76 5.29 -306.97 -1.62 -30.39 16 10 C 0.41 18.67 7.16 87.66 0.63 19.29 16 11 O -0.62 -31.91 11.16 -3.08 -0.03 -31.94 16 12 C 0.05 1.60 5.55 85.56 0.48 2.08 16 13 N -0.49 -14.79 4.09 -874.57 -3.58 -18.37 16 14 C 0.00 -0.02 5.25 86.32 0.45 0.43 16 15 C 0.07 1.77 7.01 72.01 0.50 2.27 16 16 O -0.40 -11.90 10.83 -148.98 -1.61 -13.52 16 17 C 0.08 2.06 6.20 72.01 0.45 2.51 16 18 C 0.02 0.72 1.91 44.93 0.09 0.80 16 19 H 0.07 2.93 5.62 -2.39 -0.01 2.92 16 20 C 0.14 4.04 4.68 86.38 0.40 4.44 16 21 N -0.69 -18.01 5.04 -465.50 -2.35 -20.35 16 22 C 0.59 16.79 7.85 86.93 0.68 17.47 16 23 O -0.56 -19.57 16.95 -3.72 -0.06 -19.63 16 24 C -0.06 -1.25 7.19 42.96 0.31 -0.94 16 25 C -0.21 -3.18 10.99 22.60 0.25 -2.93 16 26 C -0.02 -0.19 12.28 67.15 0.82 0.63 16 27 O 0.13 1.86 11.18 71.89 0.80 2.66 16 28 N -0.35 -7.21 11.84 -49.52 -0.59 -7.80 16 29 H 0.28 14.07 8.31 -92.70 -0.77 13.30 16 30 H 0.39 19.34 7.90 -92.71 -0.73 18.61 16 31 H 0.10 3.28 6.14 -2.39 -0.01 3.27 16 32 H 0.11 3.38 8.14 -2.39 -0.02 3.37 16 33 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.05 1.87 5.54 -2.39 -0.01 1.85 16 35 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.07 1.57 7.25 -2.39 -0.02 1.55 16 39 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.05 1.85 6.59 -2.39 -0.02 1.83 16 41 H 0.42 10.13 7.18 -92.71 -0.67 9.46 16 42 H 0.19 2.47 8.06 -2.91 -0.02 2.45 16 43 H 0.28 -1.20 8.06 -2.91 -0.02 -1.22 16 Total: -1.00 -73.94 358.20 -0.70 -74.63 By element: Atomic # 1 Polarization: 41.17 SS G_CDS: -0.31 Total: 40.87 kcal Atomic # 6 Polarization: 21.68 SS G_CDS: 6.34 Total: 28.02 kcal Atomic # 7 Polarization: -118.40 SS G_CDS: -7.85 Total: -126.25 kcal Atomic # 8 Polarization: -61.52 SS G_CDS: -0.91 Total: -62.43 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -73.94 -0.70 -74.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280397008.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.527 kcal (2) G-P(sol) polarization free energy of solvation -73.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds