Wall clock time and date at job start Tue Mar 31 2020 20:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48502 * 109.47339 * 270.00081 * 3 2 1 5 5 H 1.48504 * 109.47222 * 30.00419 * 3 2 1 6 6 H 1.48505 * 109.47133 * 150.00259 * 3 2 1 7 7 C 1.38952 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99953 * 359.97438 * 7 2 1 9 9 N 1.37093 * 120.00124 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99890 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00256 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99938 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47272 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00231 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47521 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.51327 * 59.89597 * 15 14 13 17 17 C 1.53297 * 109.51565 * 179.97438 * 15 14 13 18 18 N 1.47153 * 108.38482 * 172.27177 * 17 15 14 19 19 C 1.34784 * 120.97913 * 129.44237 * 18 17 15 20 20 O 1.21491 * 119.99697 * 353.55210 * 19 18 17 21 21 C 1.48330 * 119.99823 * 173.55318 * 19 18 17 22 22 C 1.42273 * 126.93554 * 173.18088 * 21 19 18 23 23 C 1.35317 * 103.91909 * 179.97438 * 22 21 19 24 24 O 1.34012 * 106.66874 * 0.02562 * 23 22 21 25 25 N 1.20904 * 111.84837 * 359.70170 * 24 23 22 26 26 C 1.47144 * 118.03774 * 309.46777 * 18 17 15 27 27 C 1.53294 * 108.41783 * 50.51531 * 26 18 17 28 28 O 1.42970 * 109.55137 * 299.77211 * 15 14 13 29 29 H 0.97007 * 120.00047 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00011 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47453 * 60.00021 * 12 10 9 32 32 H 1.09002 * 109.47322 * 299.99917 * 12 10 9 33 33 H 1.00907 * 111.00245 * 303.95024 * 13 12 10 34 34 H 1.09007 * 109.47177 * 59.99805 * 14 13 12 35 35 H 1.09000 * 109.47406 * 300.00177 * 14 13 12 36 36 H 1.09008 * 109.68167 * 52.55242 * 17 15 14 37 37 H 1.08994 * 109.68324 * 292.00025 * 17 15 14 38 38 H 1.07997 * 128.03671 * 0.02562 * 22 21 19 39 39 H 1.07996 * 126.66149 * 179.97438 * 23 22 21 40 40 H 1.09008 * 109.68442 * 170.25285 * 26 18 17 41 41 H 1.08997 * 109.68365 * 290.77201 * 26 18 17 42 42 H 1.09000 * 109.51646 * 67.64155 * 27 26 18 43 43 H 1.09005 * 109.51337 * 187.78995 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3797 -1.2034 0.0000 10 6 4.0535 -2.3706 -0.0011 11 8 3.4471 -3.4210 -0.0020 12 6 5.5605 -2.3707 -0.0011 13 7 6.0502 -3.7557 -0.0017 14 6 7.5186 -3.7950 -0.0023 15 6 7.9899 -5.2506 -0.0036 16 1 7.6115 -5.7550 -0.8926 17 6 9.5223 -5.2927 -0.0049 18 7 9.9484 -6.6887 0.1817 19 6 10.8480 -7.2561 -0.6463 20 8 11.2315 -6.6552 -1.6301 21 6 11.3696 -8.6140 -0.3563 22 6 12.2107 -9.4028 -1.1898 23 6 12.3977 -10.5399 -0.4805 24 8 11.7125 -10.3972 0.6623 25 7 11.1534 -9.3268 0.7211 26 6 9.3631 -7.4472 1.2985 27 6 7.8384 -7.3003 1.2373 28 8 7.5014 -5.9127 1.1656 29 1 -0.4850 0.8401 0.0004 30 1 3.8647 -0.3635 0.0004 31 1 5.9239 -1.8577 0.8894 32 1 5.9239 -1.8561 -0.8906 33 1 5.6747 -4.2724 0.7795 34 1 7.8959 -3.2913 0.8877 35 1 7.8952 -3.2908 -0.8923 36 1 9.9071 -4.6794 0.8100 37 1 9.8991 -4.9179 -0.9565 38 1 12.6082 -9.1519 -2.1621 39 1 12.9845 -11.3963 -0.7781 40 1 9.6343 -8.4993 1.2099 41 1 9.7323 -7.0513 2.2446 42 1 7.4585 -7.8125 0.3533 43 1 7.3943 -7.7378 2.1314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280561578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:43 Heat of formation + Delta-G solvation = -17.144405 kcal Electronic energy + Delta-G solvation = -28460.243025 eV Core-core repulsion = 24124.475369 eV Total energy + Delta-G solvation = -4335.767655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.66971 -40.73548 -38.87448 -38.34049 -35.81410 -35.07056 -34.51919 -33.88305 -32.58071 -31.90441 -31.58397 -28.94377 -27.73150 -25.69939 -24.47939 -23.89064 -23.46921 -22.74887 -21.42437 -20.34657 -19.35040 -18.45186 -18.35932 -18.27926 -17.66737 -16.95028 -16.61168 -16.01153 -15.95189 -15.43584 -15.29468 -15.15297 -14.81325 -14.65615 -14.19487 -14.05574 -13.92910 -13.70328 -13.49219 -13.19998 -12.96021 -12.78238 -12.35577 -11.94194 -11.92443 -11.78797 -11.68361 -11.45570 -11.13384 -11.05359 -10.99269 -10.63832 -10.57018 -10.40503 -10.27885 -9.94806 -9.54267 -9.01892 -8.55297 -8.16436 -8.10698 -6.28251 -3.79479 0.53752 1.13713 2.14346 2.55839 2.60354 3.04778 3.09223 3.17043 3.27512 3.46982 3.77920 3.90269 3.99491 4.12900 4.36679 4.46013 4.52290 4.67354 4.73116 4.79224 4.81293 4.86107 5.02377 5.13170 5.19706 5.24837 5.27641 5.34629 5.38405 5.49265 5.58776 5.66914 5.76750 5.84331 5.88812 5.96912 6.70119 6.88523 7.10467 7.32777 7.55541 7.61065 7.65902 8.17787 8.63167 8.98176 9.45625 9.86483 10.84955 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035717 B = 0.001784 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.752160 B =15692.738827 C =16095.458527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.591 5.591 10 C 0.451 3.549 11 O -0.563 6.563 12 C 0.048 3.952 13 N -0.666 5.666 14 C 0.070 3.930 15 C 0.081 3.919 16 H 0.076 0.924 17 C 0.084 3.916 18 N -0.599 5.599 19 C 0.599 3.401 20 O -0.519 6.519 21 C -0.023 4.023 22 C -0.184 4.184 23 C -0.052 4.052 24 O 0.117 5.883 25 N -0.330 5.330 26 C 0.055 3.945 27 C 0.051 3.949 28 O -0.370 6.370 29 H 0.273 0.727 30 H 0.370 0.630 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.360 0.640 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.183 0.817 39 H 0.226 0.774 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.413 -18.204 1.437 34.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.236 3.764 11 O -0.445 6.445 12 C -0.085 4.085 13 N -0.299 5.299 14 C -0.060 4.060 15 C 0.022 3.978 16 H 0.094 0.906 17 C -0.038 4.038 18 N -0.333 5.333 19 C 0.385 3.615 20 O -0.394 6.394 21 C -0.182 4.182 22 C -0.207 4.207 23 C -0.133 4.133 24 O 0.044 5.956 25 N -0.033 5.033 26 C -0.067 4.067 27 C -0.026 4.026 28 O -0.289 6.289 29 H 0.083 0.917 30 H 0.203 0.797 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.181 0.819 34 H 0.056 0.944 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.125 0.875 38 H 0.200 0.800 39 H 0.243 0.757 40 H 0.138 0.862 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 28.113 -18.169 1.472 33.505 hybrid contribution 1.375 1.535 -0.016 2.061 sum 29.488 -16.633 1.457 33.887 Atomic orbital electron populations 1.69624 1.05637 1.27444 1.49524 1.25036 0.95497 0.97965 0.97708 0.86662 0.79745 0.84029 0.78881 1.19615 1.20223 1.19530 1.19438 0.79271 0.96636 1.47970 0.86293 1.42197 1.07517 1.06143 1.67254 1.19699 0.88193 0.84560 0.83902 1.90569 1.69428 1.30948 1.53525 1.21713 0.95111 0.90402 1.01297 1.60024 1.05116 1.12666 1.52140 1.21898 0.89829 0.92853 1.01415 1.22546 0.91051 0.94714 0.89443 0.90560 1.22422 0.95637 0.81115 1.04645 1.47936 1.41741 1.13595 1.30007 1.16957 0.79079 0.82925 0.82523 1.90815 1.59211 1.62683 1.26648 1.23549 1.03137 0.98338 0.93148 1.22804 1.01418 0.93176 1.03284 1.26091 0.99367 1.01656 0.86158 1.84819 1.46593 1.28269 1.35910 1.74092 1.14147 0.94007 1.21075 1.23080 0.94859 0.99328 0.89480 1.22958 0.92890 0.83438 1.03337 1.87984 1.76561 1.21810 1.42500 0.91653 0.79696 0.93675 0.89442 0.81930 0.94378 0.89373 0.90001 0.87525 0.80000 0.75720 0.86209 0.90098 0.92486 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.07 13.96 55.50 0.77 -25.29 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.60 27.74 -169.99 -4.71 14.88 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 7 C -0.30 -8.76 10.16 -14.93 -0.15 -8.91 16 8 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 9 N -0.59 -14.35 5.09 -10.96 -0.06 -14.41 16 10 C 0.45 10.50 7.82 -10.99 -0.09 10.41 16 11 O -0.56 -15.55 15.78 5.55 0.09 -15.46 16 12 C 0.05 0.81 6.17 -4.98 -0.03 0.78 16 13 N -0.67 -10.82 6.12 -115.06 -0.70 -11.52 16 14 C 0.07 0.84 5.42 -3.83 -0.02 0.82 16 15 C 0.08 0.93 3.05 -26.58 -0.08 0.85 16 16 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 17 C 0.08 0.84 5.94 -3.53 -0.02 0.82 16 18 N -0.60 -6.19 3.02 -173.21 -0.52 -6.71 16 19 C 0.60 6.79 7.72 -12.10 -0.09 6.69 16 20 O -0.52 -7.16 16.43 5.37 0.09 -7.08 16 21 C -0.02 -0.21 6.87 -82.53 -0.57 -0.78 16 22 C -0.18 -1.11 11.00 -39.07 -0.43 -1.54 16 23 C -0.05 -0.17 12.28 29.69 0.36 0.19 16 24 O 0.12 0.69 11.18 17.25 0.19 0.88 16 25 N -0.33 -2.68 8.71 33.29 0.29 -2.39 16 26 C 0.06 0.48 6.27 -3.54 -0.02 0.46 16 27 C 0.05 0.49 6.99 37.31 0.26 0.75 16 28 O -0.37 -4.51 9.74 -35.23 -0.34 -4.85 16 29 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.37 7.86 5.76 -40.82 -0.24 7.63 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.36 6.36 7.84 -39.29 -0.31 6.05 16 34 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 37 H 0.11 1.09 7.06 -51.93 -0.37 0.72 16 38 H 0.18 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.23 -0.35 8.06 -52.49 -0.42 -0.77 16 40 H 0.12 1.00 4.42 -52.37 -0.23 0.77 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -36.78 363.84 -5.75 -42.52 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.35 Total: 12.36 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -0.97 Total: 11.58 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.22 Total: -60.33 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: 0.03 Total: -26.50 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.88 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.78 -5.75 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280561578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.379 kcal (2) G-P(sol) polarization free energy of solvation -36.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds