Wall clock time and date at job start Tue Mar 31 2020 20:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48502 * 109.47339 * 270.00081 * 3 2 1 5 5 H 1.48504 * 109.47222 * 30.00419 * 3 2 1 6 6 H 1.48505 * 109.47133 * 150.00259 * 3 2 1 7 7 C 1.38952 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99953 * 359.97438 * 7 2 1 9 9 N 1.37093 * 120.00124 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99890 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00256 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99938 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47272 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00231 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47521 * 180.02562 * 14 13 12 16 16 H 1.08995 * 109.51327 * 59.89597 * 15 14 13 17 17 C 1.53297 * 109.51565 * 179.97438 * 15 14 13 18 18 N 1.47153 * 108.38482 * 172.27177 * 17 15 14 19 19 C 1.34784 * 120.97913 * 129.44237 * 18 17 15 20 20 O 1.21491 * 119.99697 * 353.55210 * 19 18 17 21 21 C 1.48330 * 119.99823 * 173.55318 * 19 18 17 22 22 C 1.42273 * 126.93554 * 173.18088 * 21 19 18 23 23 C 1.35317 * 103.91909 * 179.97438 * 22 21 19 24 24 O 1.34012 * 106.66874 * 0.02562 * 23 22 21 25 25 N 1.20904 * 111.84837 * 359.70170 * 24 23 22 26 26 C 1.47144 * 118.03774 * 309.46777 * 18 17 15 27 27 C 1.53294 * 108.41783 * 50.51531 * 26 18 17 28 28 O 1.42970 * 109.55137 * 299.77211 * 15 14 13 29 29 H 0.97007 * 120.00047 * 359.97438 * 1 2 3 30 30 H 0.96996 * 120.00011 * 359.97438 * 9 7 2 31 31 H 1.09000 * 109.47453 * 60.00021 * 12 10 9 32 32 H 1.09002 * 109.47322 * 299.99917 * 12 10 9 33 33 H 1.00907 * 111.00245 * 303.95024 * 13 12 10 34 34 H 1.09007 * 109.47177 * 59.99805 * 14 13 12 35 35 H 1.09000 * 109.47406 * 300.00177 * 14 13 12 36 36 H 1.09008 * 109.68167 * 52.55242 * 17 15 14 37 37 H 1.08994 * 109.68324 * 292.00025 * 17 15 14 38 38 H 1.07997 * 128.03671 * 0.02562 * 22 21 19 39 39 H 1.07996 * 126.66149 * 179.97438 * 23 22 21 40 40 H 1.09008 * 109.68442 * 170.25285 * 26 18 17 41 41 H 1.08997 * 109.68365 * 290.77201 * 26 18 17 42 42 H 1.09000 * 109.51646 * 67.64155 * 27 26 18 43 43 H 1.09005 * 109.51337 * 187.78995 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3797 -1.2034 0.0000 10 6 4.0535 -2.3706 -0.0011 11 8 3.4471 -3.4210 -0.0020 12 6 5.5605 -2.3707 -0.0011 13 7 6.0502 -3.7557 -0.0017 14 6 7.5186 -3.7950 -0.0023 15 6 7.9899 -5.2506 -0.0036 16 1 7.6115 -5.7550 -0.8926 17 6 9.5223 -5.2927 -0.0049 18 7 9.9484 -6.6887 0.1817 19 6 10.8480 -7.2561 -0.6463 20 8 11.2315 -6.6552 -1.6301 21 6 11.3696 -8.6140 -0.3563 22 6 12.2107 -9.4028 -1.1898 23 6 12.3977 -10.5399 -0.4805 24 8 11.7125 -10.3972 0.6623 25 7 11.1534 -9.3268 0.7211 26 6 9.3631 -7.4472 1.2985 27 6 7.8384 -7.3003 1.2373 28 8 7.5014 -5.9127 1.1656 29 1 -0.4850 0.8401 0.0004 30 1 3.8647 -0.3635 0.0004 31 1 5.9239 -1.8577 0.8894 32 1 5.9239 -1.8561 -0.8906 33 1 5.6747 -4.2724 0.7795 34 1 7.8959 -3.2913 0.8877 35 1 7.8952 -3.2908 -0.8923 36 1 9.9071 -4.6794 0.8100 37 1 9.8991 -4.9179 -0.9565 38 1 12.6082 -9.1519 -2.1621 39 1 12.9845 -11.3963 -0.7781 40 1 9.6343 -8.4993 1.2099 41 1 9.7323 -7.0513 2.2446 42 1 7.4585 -7.8125 0.3533 43 1 7.3943 -7.7378 2.1314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280561578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:42 Heat of formation + Delta-G solvation = -48.424898 kcal Electronic energy + Delta-G solvation = -28461.599449 eV Core-core repulsion = 24124.475369 eV Total energy + Delta-G solvation = -4337.124079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -46.17448 -41.56152 -40.32128 -39.63997 -36.95662 -36.10230 -35.81228 -35.06055 -33.76723 -33.22383 -32.63011 -29.87397 -28.92727 -27.05072 -25.54437 -24.91765 -24.14030 -23.65106 -22.28950 -21.29715 -20.97753 -20.27869 -19.01719 -18.88118 -18.36808 -17.92694 -17.79843 -17.25737 -16.98904 -16.75076 -16.51416 -16.14466 -15.96610 -15.65127 -15.38883 -15.03365 -14.94549 -14.69133 -14.57160 -14.43063 -14.30481 -14.13858 -13.57647 -13.30680 -13.17299 -12.87182 -12.72362 -12.47755 -12.41584 -12.34512 -11.97586 -11.86072 -11.61879 -11.51825 -11.45688 -11.22355 -10.72696 -10.45544 -10.25164 -9.83803 -9.35253 -8.41404 -6.02542 -0.03955 0.74426 1.30588 1.36339 1.42202 1.45179 1.86440 1.95332 2.21579 2.23403 2.60118 2.69066 2.71715 3.14744 3.28640 3.43108 3.70840 3.79081 3.85120 3.90867 3.98053 4.11309 4.16774 4.18426 4.31611 4.39612 4.44348 4.51201 4.56038 4.61332 4.64095 4.74623 4.79649 4.88276 4.95867 5.12578 5.52165 5.87922 5.91722 5.99355 6.07909 6.34730 6.59678 6.61208 6.87739 7.01651 7.39332 7.96354 8.76315 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035717 B = 0.001784 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.752160 B =15692.738827 C =16095.458527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.230 1.230 7 C -0.331 4.331 8 H 0.054 0.946 9 N -0.590 5.590 10 C 0.447 3.553 11 O -0.616 6.616 12 C 0.062 3.938 13 N -0.687 5.687 14 C 0.073 3.927 15 C 0.086 3.914 16 H 0.055 0.945 17 C 0.089 3.911 18 N -0.602 5.602 19 C 0.594 3.406 20 O -0.555 6.555 21 C -0.054 4.054 22 C -0.205 4.205 23 C -0.018 4.018 24 O 0.123 5.877 25 N -0.344 5.344 26 C 0.062 3.938 27 C 0.048 3.952 28 O -0.388 6.388 29 H 0.279 0.721 30 H 0.390 0.610 31 H 0.079 0.921 32 H 0.119 0.881 33 H 0.348 0.652 34 H 0.057 0.943 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.190 0.810 39 H 0.278 0.722 40 H 0.126 0.874 41 H 0.089 0.911 42 H 0.048 0.952 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.199 -17.491 1.919 37.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.787 3.213 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.154 1.154 7 C -0.460 4.460 8 H 0.072 0.928 9 N -0.232 5.232 10 C 0.235 3.765 11 O -0.500 6.500 12 C -0.070 4.070 13 N -0.320 5.320 14 C -0.056 4.056 15 C 0.028 3.972 16 H 0.073 0.927 17 C -0.033 4.033 18 N -0.335 5.335 19 C 0.381 3.619 20 O -0.432 6.432 21 C -0.211 4.211 22 C -0.228 4.228 23 C -0.098 4.098 24 O 0.048 5.952 25 N -0.046 5.046 26 C -0.060 4.060 27 C -0.029 4.029 28 O -0.307 6.307 29 H 0.089 0.911 30 H 0.226 0.774 31 H 0.097 0.903 32 H 0.137 0.863 33 H 0.167 0.833 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.207 0.793 39 H 0.294 0.706 40 H 0.144 0.856 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 31.920 -17.451 1.970 36.432 hybrid contribution 0.165 1.076 -0.162 1.100 sum 32.084 -16.376 1.808 36.067 Atomic orbital electron populations 1.69808 1.08177 1.29274 1.50240 1.26142 0.96500 1.02786 0.95991 0.85338 0.79489 0.76546 0.79966 1.18132 1.19978 1.15353 1.19015 0.81561 0.94937 1.50482 0.92823 1.42009 1.05786 1.07580 1.67781 1.21012 0.91075 0.83302 0.81109 1.90546 1.71443 1.32915 1.55120 1.21653 0.89504 0.91606 1.04266 1.60013 1.07792 1.12219 1.51982 1.22001 0.87061 0.93378 1.03147 1.22445 0.91874 0.94404 0.88524 0.92659 1.22365 0.94449 0.81445 1.05087 1.48070 1.41493 1.13820 1.30126 1.17326 0.78817 0.83714 0.82019 1.90776 1.60532 1.63837 1.28023 1.23499 1.04931 0.97967 0.94684 1.23060 1.01860 0.93915 1.03984 1.26961 0.97186 1.01760 0.83879 1.84784 1.46263 1.27236 1.36880 1.74055 1.14936 0.94628 1.21026 1.23097 0.94029 0.99646 0.89248 1.23112 0.93609 0.82317 1.03831 1.87956 1.77064 1.23024 1.42626 0.91126 0.77379 0.90329 0.86324 0.83284 0.92518 0.87478 0.88477 0.87866 0.79271 0.70628 0.85643 0.89254 0.93391 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.05 13.96 21.66 0.30 -56.74 16 2 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 3 Si 0.97 39.16 27.74 68.60 1.90 41.06 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 6 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 7 C -0.33 -19.77 10.16 84.04 0.85 -18.91 16 8 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 9 N -0.59 -28.37 5.09 -306.99 -1.56 -29.93 16 10 C 0.45 20.80 7.82 87.66 0.69 21.49 16 11 O -0.62 -35.43 15.78 -3.06 -0.05 -35.48 16 12 C 0.06 1.93 6.17 85.56 0.53 2.46 16 13 N -0.69 -21.49 6.12 -517.93 -3.17 -24.67 16 14 C 0.07 1.59 5.42 86.30 0.47 2.06 16 15 C 0.09 1.93 3.05 30.69 0.09 2.02 16 16 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 17 C 0.09 1.72 5.94 86.35 0.51 2.23 16 18 N -0.60 -12.33 3.02 -820.21 -2.48 -14.81 16 19 C 0.59 13.62 7.72 86.93 0.67 14.29 16 20 O -0.55 -15.70 16.43 -3.69 -0.06 -15.76 16 21 C -0.05 -0.95 6.87 42.96 0.30 -0.66 16 22 C -0.21 -2.19 11.00 22.60 0.25 -1.94 16 23 C -0.02 -0.06 12.28 67.15 0.82 0.76 16 24 O 0.12 1.17 11.18 71.92 0.80 1.97 16 25 N -0.34 -5.22 8.71 -49.52 -0.43 -5.65 16 26 C 0.06 1.05 6.27 86.35 0.54 1.59 16 27 C 0.05 0.91 6.99 72.08 0.50 1.41 16 28 O -0.39 -9.30 9.74 -148.98 -1.45 -10.75 16 29 H 0.28 15.54 8.31 -92.70 -0.77 14.77 16 30 H 0.39 15.41 5.76 -92.71 -0.53 14.88 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.35 12.27 7.84 -89.69 -0.70 11.57 16 34 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.10 1.57 8.14 -2.38 -0.02 1.56 16 37 H 0.10 2.07 7.06 -2.39 -0.02 2.05 16 38 H 0.19 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.28 -2.28 8.06 -2.91 -0.02 -2.31 16 40 H 0.13 2.03 4.42 -3.26 -0.01 2.02 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.13 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -87.83 363.84 0.28 -87.55 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: -0.22 Total: 36.80 kcal Atomic # 6 Polarization: 19.71 SS G_CDS: 6.69 Total: 26.40 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -7.34 Total: -131.79 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -0.76 Total: -60.02 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.90 Total: 41.06 kcal Total: -87.83 0.28 -87.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280561578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.126 kcal (2) G-P(sol) polarization free energy of solvation -87.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds