Wall clock time and date at job start Tue Mar 31 2020 20:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86806 * 119.99900 * 2 1 4 4 H 1.48502 * 109.47134 * 269.99793 * 3 2 1 5 5 H 1.48500 * 109.47194 * 29.99939 * 3 2 1 6 6 H 1.48501 * 109.47055 * 149.99646 * 3 2 1 7 7 C 1.38952 * 120.00404 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00338 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99673 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00113 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99462 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00100 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47182 * 180.02562 * 12 10 9 14 14 C 1.46897 * 111.00232 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46993 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.51445 * 304.99702 * 15 14 13 17 17 C 1.53297 * 109.50973 * 184.90027 * 15 14 13 18 18 N 1.47152 * 108.38426 * 187.77360 * 17 15 14 19 19 C 1.34774 * 120.98278 * 230.51276 * 18 17 15 20 20 O 1.21494 * 120.00077 * 355.89457 * 19 18 17 21 21 C 1.48332 * 120.00444 * 175.89262 * 19 18 17 22 22 C 1.42272 * 126.94388 * 186.41672 * 21 19 18 23 23 C 1.35313 * 103.92599 * 179.90748 * 22 21 19 24 24 O 1.34025 * 106.66443 * 0.35177 * 23 22 21 25 25 N 1.20901 * 111.84575 * 359.75777 * 24 23 22 26 26 C 1.47156 * 118.03598 * 50.53251 * 18 17 15 27 27 C 1.53288 * 108.38309 * 309.46377 * 26 18 17 28 28 O 1.42955 * 109.51445 * 65.10123 * 15 14 13 29 29 H 0.97001 * 120.00058 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00106 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.47203 * 60.00514 * 12 10 9 32 32 H 1.09004 * 109.47286 * 299.99954 * 12 10 9 33 33 H 1.00903 * 110.99609 * 303.95615 * 13 12 10 34 34 H 1.09000 * 109.47110 * 60.00145 * 14 13 12 35 35 H 1.09004 * 109.46844 * 299.99860 * 14 13 12 36 36 H 1.09002 * 109.68247 * 307.49335 * 17 15 14 37 37 H 1.09000 * 109.68798 * 68.04884 * 17 15 14 38 38 H 1.08005 * 128.03409 * 0.03285 * 22 21 19 39 39 H 1.07991 * 126.66792 * 180.08507 * 23 22 21 40 40 H 1.09004 * 109.68051 * 69.19424 * 26 18 17 41 41 H 1.09000 * 109.67679 * 189.70780 * 26 18 17 42 42 H 1.09002 * 109.51288 * 172.22361 * 27 26 18 43 43 H 1.08998 * 109.51876 * 292.32656 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5577 0.0011 12 6 1.2439 -4.8629 0.0022 13 7 2.1985 -5.9795 0.0027 14 6 1.4983 -7.2708 0.0039 15 6 2.5232 -8.4067 0.0050 16 1 3.2047 -8.2831 -0.8367 17 6 1.7974 -9.7514 -0.1172 18 7 2.7811 -10.8289 0.0742 19 6 2.8771 -11.8451 -0.8059 20 8 2.0962 -11.9211 -1.7336 21 6 3.9360 -12.8708 -0.6421 22 6 4.2521 -13.9251 -1.5435 23 6 5.2795 -14.5695 -0.9435 24 8 5.5141 -13.9286 0.2099 25 7 4.7653 -12.9921 0.3646 26 6 3.6567 -10.7644 1.2552 27 6 4.2919 -9.3704 1.3104 28 8 3.2642 -8.3801 1.2272 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 0.0016 31 1 0.6169 -4.9209 -0.8876 32 1 0.6175 -4.9205 0.8924 33 1 2.8334 -5.9127 -0.7787 34 1 0.8731 -7.3460 -0.8859 35 1 0.8737 -7.3446 0.8942 36 1 1.0230 -9.8214 0.6468 37 1 1.3469 -9.8370 -1.1060 38 1 3.7824 -14.1561 -2.4883 39 1 5.8052 -15.4350 -1.3189 40 1 3.0695 -10.9364 2.1573 41 1 4.4371 -11.5211 1.1752 42 1 4.8342 -9.2543 2.2488 43 1 4.9812 -9.2509 0.4745 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280561579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:48 Heat of formation + Delta-G solvation = -20.196944 kcal Electronic energy + Delta-G solvation = -28420.573229 eV Core-core repulsion = 24084.673205 eV Total energy + Delta-G solvation = -4335.900023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.65340 -40.68115 -38.77539 -38.16396 -35.74664 -35.02517 -34.49423 -33.82754 -32.57607 -31.80328 -31.15213 -28.83572 -27.59592 -25.61348 -24.48408 -23.93198 -23.49684 -22.71287 -21.46516 -20.33792 -19.20342 -18.35996 -18.31175 -17.87277 -17.67745 -17.05968 -16.33593 -16.04306 -15.83120 -15.34217 -15.18468 -15.11143 -14.68088 -14.43412 -14.18476 -14.10723 -13.93396 -13.67253 -13.43501 -13.29920 -12.96093 -12.73887 -12.11140 -11.88461 -11.68259 -11.49133 -11.46797 -11.37333 -11.02102 -11.01127 -10.91508 -10.51895 -10.36890 -10.35742 -10.24076 -10.18725 -9.47809 -8.95127 -8.42307 -8.00742 -7.92188 -6.38617 -3.79240 0.55422 1.15491 2.17039 2.56477 2.63803 3.20159 3.28509 3.29541 3.34881 3.57437 3.92938 3.94655 4.03416 4.25326 4.36623 4.53627 4.56192 4.71672 4.77996 4.83162 4.88587 4.98001 5.15230 5.21988 5.24524 5.29285 5.29671 5.41982 5.44061 5.57016 5.60520 5.82545 5.83733 5.94710 6.01604 6.29859 6.74172 7.02780 7.23078 7.35664 7.58259 7.58654 7.67894 8.09771 8.65011 9.21254 9.57910 10.09730 10.79201 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033198 B = 0.001737 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.222433 B =16116.153660 C =16448.282239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.582 6.582 12 C 0.051 3.949 13 N -0.660 5.660 14 C 0.068 3.932 15 C 0.084 3.916 16 H 0.063 0.937 17 C 0.084 3.916 18 N -0.597 5.597 19 C 0.598 3.402 20 O -0.521 6.521 21 C -0.020 4.020 22 C -0.185 4.185 23 C -0.050 4.050 24 O 0.115 5.885 25 N -0.330 5.330 26 C 0.043 3.957 27 C 0.049 3.951 28 O -0.351 6.351 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.348 0.652 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.183 0.817 39 H 0.226 0.774 40 H 0.080 0.920 41 H 0.131 0.869 42 H 0.109 0.891 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.954 -31.163 -0.993 31.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.227 3.773 11 O -0.466 6.466 12 C -0.081 4.081 13 N -0.292 5.292 14 C -0.062 4.062 15 C 0.025 3.975 16 H 0.081 0.919 17 C -0.039 4.039 18 N -0.331 5.331 19 C 0.384 3.616 20 O -0.396 6.396 21 C -0.179 4.179 22 C -0.207 4.207 23 C -0.131 4.131 24 O 0.044 5.956 25 N -0.034 5.034 26 C -0.080 4.080 27 C -0.029 4.029 28 O -0.268 6.268 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.167 0.833 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.200 0.800 39 H 0.243 0.757 40 H 0.099 0.901 41 H 0.148 0.852 42 H 0.127 0.873 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.396 -30.161 0.460 30.835 hybrid contribution -0.768 0.246 -1.828 1.998 sum 5.629 -29.915 -1.368 30.471 Atomic orbital electron populations 1.69612 1.05923 1.28102 1.50743 1.25258 0.95638 0.99698 0.97397 0.85855 0.79256 0.80826 0.78326 1.20470 1.20937 1.19415 1.19707 0.93379 0.82254 1.47484 0.87936 1.41859 1.09190 1.04582 1.64520 1.19798 0.88385 0.84710 0.84383 1.90526 1.13774 1.87050 1.55233 1.21680 0.94294 0.90932 1.01242 1.59945 1.18577 0.99356 1.51334 1.21899 0.94358 0.88352 1.01578 1.22463 0.93768 0.92996 0.88308 0.91865 1.22433 0.91183 0.85618 1.04645 1.47960 1.37219 1.23299 1.24608 1.16975 0.82470 0.80097 0.82082 1.90812 1.41811 1.74998 1.31959 1.23568 0.99876 1.00494 0.93931 1.22795 0.99345 0.95443 1.03136 1.26088 0.99464 1.00823 0.86744 1.84823 1.44907 1.30670 1.35243 1.73872 1.03726 1.04188 1.21657 1.23339 0.95948 1.01103 0.87599 1.22940 0.90324 0.86385 1.03274 1.88174 1.47976 1.53874 1.36815 0.91914 0.77460 0.93880 0.89458 0.83275 0.93625 0.89788 0.89766 0.87796 0.79998 0.75719 0.90129 0.85169 0.87287 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.85 13.05 55.50 0.72 -24.12 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 9 N -0.56 -14.60 5.29 -10.96 -0.06 -14.66 16 10 C 0.44 10.71 7.82 -10.99 -0.09 10.62 16 11 O -0.58 -16.26 15.78 5.55 0.09 -16.17 16 12 C 0.05 0.92 6.17 -4.98 -0.03 0.89 16 13 N -0.66 -11.16 6.08 -115.06 -0.70 -11.86 16 14 C 0.07 0.86 5.36 -3.83 -0.02 0.84 16 15 C 0.08 1.00 2.96 -26.58 -0.08 0.93 16 16 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 17 C 0.08 0.88 5.91 -3.53 -0.02 0.86 16 18 N -0.60 -6.44 3.02 -173.20 -0.52 -6.96 16 19 C 0.60 6.95 7.73 -12.11 -0.09 6.86 16 20 O -0.52 -7.31 16.45 5.37 0.09 -7.22 16 21 C -0.02 -0.19 6.95 -82.52 -0.57 -0.76 16 22 C -0.18 -1.15 11.00 -39.08 -0.43 -1.58 16 23 C -0.05 -0.17 12.28 29.69 0.36 0.19 16 24 O 0.11 0.70 11.18 17.22 0.19 0.89 16 25 N -0.33 -2.76 8.54 33.30 0.28 -2.48 16 26 C 0.04 0.40 6.50 -3.53 -0.02 0.38 16 27 C 0.05 0.50 6.98 37.31 0.26 0.76 16 28 O -0.35 -4.72 10.34 -35.23 -0.36 -5.09 16 29 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.35 6.06 8.43 -39.29 -0.33 5.73 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 1.10 7.11 -51.93 -0.37 0.73 16 38 H 0.18 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.23 -0.32 8.06 -52.49 -0.42 -0.74 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.13 1.15 3.92 -67.67 -0.27 0.89 16 42 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -35.94 367.64 -6.17 -42.11 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -5.45 Total: 11.83 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -0.97 Total: 11.86 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -0.27 Total: -60.07 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: 0.00 Total: -27.59 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.94 -6.17 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280561579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.915 kcal (2) G-P(sol) polarization free energy of solvation -35.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds