Wall clock time and date at job start Tue Mar 31 2020 20:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86796 * 120.00067 * 2 1 4 4 H 1.48501 * 109.47328 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47120 * 299.99318 * 3 2 1 6 6 H 1.48503 * 109.47488 * 59.99744 * 3 2 1 7 7 C 1.38950 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00051 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00030 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99673 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99882 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.46909 * 179.97438 * 12 10 9 14 14 C 1.46897 * 110.99992 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47013 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.50974 * 60.00605 * 15 14 13 17 17 C 1.53297 * 109.50809 * 180.10323 * 15 14 13 18 18 N 1.47151 * 108.38205 * 172.22615 * 17 15 14 19 19 C 1.34775 * 120.98342 * 129.43947 * 18 17 15 20 20 O 1.21608 * 120.00023 * 353.27613 * 19 18 17 21 21 C 1.47419 * 119.99880 * 173.26728 * 19 18 17 22 22 C 1.36100 * 126.44528 * 172.94402 * 21 19 18 23 23 O 1.34262 * 106.94668 * 179.90438 * 22 21 19 24 24 C 1.34050 * 108.22572 * 0.36446 * 23 22 21 25 25 N 1.29928 * 109.24641 * 359.77214 * 24 23 22 26 26 C 1.47157 * 118.03710 * 309.46536 * 18 17 15 27 27 C 1.53301 * 108.38094 * 50.53349 * 26 18 17 28 28 O 1.42952 * 109.26830 * 307.72144 * 27 26 18 29 29 H 0.97006 * 119.99708 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00097 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47424 * 60.00182 * 12 10 9 32 32 H 1.08995 * 109.47028 * 299.99653 * 12 10 9 33 33 H 1.00896 * 110.99719 * 303.95561 * 13 12 10 34 34 H 1.08998 * 109.46852 * 60.00018 * 14 13 12 35 35 H 1.09003 * 109.47413 * 300.00434 * 14 13 12 36 36 H 1.09001 * 109.68298 * 291.94738 * 17 15 14 37 37 H 1.08995 * 109.68320 * 52.47100 * 17 15 14 38 38 H 1.07997 * 126.52480 * 0.04621 * 22 21 19 39 39 H 1.07999 * 125.37321 * 179.80248 * 24 23 22 40 40 H 1.09001 * 109.68239 * 170.25796 * 26 18 17 41 41 H 1.08993 * 109.68021 * 290.77473 * 26 18 17 42 42 H 1.08998 * 109.51253 * 67.62730 * 27 26 18 43 43 H 1.09001 * 109.50761 * 187.72459 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0001 12 6 1.2436 -4.8629 0.0000 13 7 2.1982 -5.9796 -0.0005 14 6 1.4979 -7.2709 -0.0005 15 6 2.5228 -8.4069 -0.0004 16 1 3.1479 -8.3330 0.8895 17 6 1.7929 -9.7549 -0.0030 18 7 2.7888 -10.8215 -0.1917 19 6 2.8299 -11.8863 0.6335 20 8 2.1203 -11.9184 1.6206 21 6 3.7350 -13.0122 0.3395 22 6 3.9816 -14.0825 1.1433 23 8 4.8593 -14.8648 0.4949 24 6 5.1519 -14.2845 -0.6775 25 7 4.4856 -13.1741 -0.7838 26 6 3.7390 -10.6911 -1.3077 27 6 4.3741 -9.2973 -1.2415 28 8 3.3415 -8.3115 -1.1685 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 -0.0002 31 1 0.6173 -4.9205 -0.8902 32 1 0.6167 -4.9208 0.8897 33 1 2.8330 -5.9121 -0.7818 34 1 0.8727 -7.3451 -0.8903 35 1 0.8732 -7.3454 0.8896 36 1 1.2794 -9.8962 0.9481 37 1 1.0694 -9.7791 -0.8179 38 1 3.5514 -14.2683 2.1162 39 1 5.8334 -14.6781 -1.4171 40 1 4.5143 -11.4523 -1.2207 41 1 3.2121 -10.8104 -2.2543 42 1 5.0067 -9.2272 -0.3567 43 1 4.9766 -9.1291 -2.1342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280566987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:05 Heat of formation + Delta-G solvation = -64.601333 kcal Electronic energy + Delta-G solvation = -28374.827328 eV Core-core repulsion = 24037.001786 eV Total energy + Delta-G solvation = -4337.825542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.03048 -40.53571 -38.71185 -38.12688 -35.84566 -35.32348 -34.73626 -33.80994 -31.97446 -31.14971 -30.92522 -28.72173 -27.46061 -25.43375 -24.23467 -23.83038 -23.22528 -22.66955 -21.31393 -20.26947 -19.18876 -18.28901 -17.83811 -17.42295 -17.24564 -16.82978 -16.50799 -16.04725 -15.80072 -15.47227 -15.29041 -15.10450 -14.81169 -14.45908 -14.21356 -14.13661 -13.98617 -13.60289 -13.36951 -13.27440 -12.82491 -12.65685 -12.02597 -11.88537 -11.66789 -11.59962 -11.44262 -11.31355 -11.21581 -11.01577 -10.82683 -10.38645 -10.30898 -10.18233 -10.10098 -9.76726 -9.47536 -8.83462 -8.39587 -7.99303 -7.90665 -6.37431 -3.77912 0.57294 1.44157 2.09383 2.45506 2.80723 3.19627 3.29756 3.37381 3.37708 3.60568 3.96645 4.06464 4.11666 4.27676 4.29762 4.66554 4.78704 4.87394 4.90928 4.93868 5.03161 5.07544 5.14827 5.20162 5.29974 5.34917 5.37879 5.51012 5.55325 5.72971 5.80125 5.83278 5.92307 6.04025 6.12834 6.32140 6.76436 6.97458 7.02860 7.27065 7.59718 7.66119 7.78683 8.11600 8.66547 9.22731 9.59556 10.11414 10.80519 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.036882 B = 0.001714 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.989611 B =16328.181277 C =16696.149942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.565 5.565 10 C 0.442 3.558 11 O -0.582 6.582 12 C 0.050 3.950 13 N -0.666 5.666 14 C 0.070 3.930 15 C 0.083 3.917 16 H 0.074 0.926 17 C 0.083 3.917 18 N -0.596 5.596 19 C 0.602 3.398 20 O -0.535 6.535 21 C -0.072 4.072 22 C 0.021 3.979 23 O -0.197 6.197 24 C 0.182 3.818 25 N -0.466 5.466 26 C 0.051 3.949 27 C 0.050 3.950 28 O -0.372 6.372 29 H 0.270 0.730 30 H 0.392 0.608 31 H 0.044 0.956 32 H 0.086 0.914 33 H 0.358 0.642 34 H 0.037 0.963 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.232 0.768 39 H 0.257 0.743 40 H 0.139 0.861 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.950 -31.429 -2.525 32.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.121 0.879 9 N -0.202 5.202 10 C 0.228 3.772 11 O -0.466 6.466 12 C -0.083 4.083 13 N -0.300 5.300 14 C -0.060 4.060 15 C 0.024 3.976 16 H 0.092 0.908 17 C -0.040 4.040 18 N -0.328 5.328 19 C 0.390 3.610 20 O -0.412 6.412 21 C -0.191 4.191 22 C -0.053 4.053 23 O -0.082 6.082 24 C -0.046 4.046 25 N -0.196 5.196 26 C -0.071 4.071 27 C -0.028 4.028 28 O -0.291 6.291 29 H 0.080 0.920 30 H 0.225 0.775 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.179 0.821 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.248 0.752 39 H 0.272 0.728 40 H 0.156 0.844 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.355 -30.727 -1.980 31.439 hybrid contribution -0.557 0.198 -0.376 0.700 sum 5.798 -30.528 -2.356 31.163 Atomic orbital electron populations 1.69625 1.05922 1.27970 1.50895 1.25260 0.95642 0.99699 0.97455 0.85797 0.79709 0.81163 0.77648 1.19237 1.20810 1.20786 1.19760 0.93407 0.82250 1.47297 0.87879 1.41868 1.09193 1.04589 1.64583 1.19813 0.88387 0.84723 0.84296 1.90524 1.13786 1.87067 1.55184 1.21680 0.94387 0.90993 1.01204 1.60035 1.18622 0.99319 1.51979 1.21899 0.94257 0.88546 1.01327 1.22524 0.92770 0.92973 0.89354 0.90767 1.22385 0.91014 0.86140 1.04415 1.47856 1.34005 1.20804 1.30172 1.16796 0.81190 0.80736 0.82303 1.90838 1.43522 1.79927 1.26937 1.21736 1.04454 0.99538 0.93386 1.25352 0.91373 0.89404 0.99140 1.84470 1.48565 1.46157 1.29025 1.28320 1.00165 0.89225 0.86843 1.70624 1.09163 1.16928 1.22886 1.23262 0.94596 1.00200 0.89049 1.22981 0.90005 0.86895 1.02908 1.87970 1.45169 1.53297 1.42642 0.91984 0.77463 0.93802 0.89592 0.82120 0.94478 0.89482 0.87729 0.90235 0.75190 0.72776 0.84423 0.90746 0.92797 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.95 13.05 55.50 0.72 -24.22 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 3 Si 0.93 21.41 29.55 -169.99 -5.02 16.38 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 8 H 0.10 3.09 7.16 -52.49 -0.38 2.71 16 9 N -0.57 -14.70 5.29 -10.96 -0.06 -14.76 16 10 C 0.44 10.82 7.82 -10.98 -0.09 10.73 16 11 O -0.58 -16.37 15.78 5.55 0.09 -16.28 16 12 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 13 N -0.67 -11.54 6.13 -115.06 -0.70 -12.25 16 14 C 0.07 0.91 5.42 -3.82 -0.02 0.89 16 15 C 0.08 1.02 3.05 -26.58 -0.08 0.94 16 16 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 17 C 0.08 0.90 5.95 -3.53 -0.02 0.88 16 18 N -0.60 -6.44 3.02 -173.54 -0.52 -6.96 16 19 C 0.60 6.88 7.69 -12.52 -0.10 6.78 16 20 O -0.54 -7.38 16.37 5.27 0.09 -7.29 16 21 C -0.07 -0.63 6.67 -83.02 -0.55 -1.19 16 22 C 0.02 0.13 11.95 29.96 0.36 0.49 16 23 O -0.20 -1.01 10.73 6.50 0.07 -0.94 16 24 C 0.18 0.71 13.19 51.96 0.69 1.40 16 25 N -0.47 -3.34 7.87 -11.48 -0.09 -3.43 16 26 C 0.05 0.47 6.25 -3.53 -0.02 0.45 16 27 C 0.05 0.50 6.98 37.31 0.26 0.76 16 28 O -0.37 -4.82 9.73 -35.23 -0.34 -5.17 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 30 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.36 6.69 7.83 -39.29 -0.31 6.39 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.16 7.06 -51.93 -0.37 0.79 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.23 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.26 -0.31 8.06 -52.49 -0.42 -0.73 16 40 H 0.14 1.15 4.32 -54.23 -0.23 0.92 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -36.44 367.11 -5.48 -41.92 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.39 Total: 12.61 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 0.15 Total: 14.86 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.65 Total: -61.63 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.10 Total: -29.68 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.44 -5.48 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280566987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.681 kcal (2) G-P(sol) polarization free energy of solvation -36.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds