Wall clock time and date at job start Tue Mar 31 2020 20:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86796 * 120.00067 * 2 1 4 4 H 1.48501 * 109.47328 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47120 * 299.99318 * 3 2 1 6 6 H 1.48503 * 109.47488 * 59.99744 * 3 2 1 7 7 C 1.38950 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00051 * 180.02562 * 7 2 1 9 9 N 1.37095 * 119.99874 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00030 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99673 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99882 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.46909 * 179.97438 * 12 10 9 14 14 C 1.46897 * 110.99992 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47013 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.50974 * 60.00605 * 15 14 13 17 17 C 1.53297 * 109.50809 * 180.10323 * 15 14 13 18 18 N 1.47151 * 108.38205 * 172.22615 * 17 15 14 19 19 C 1.34775 * 120.98342 * 129.43947 * 18 17 15 20 20 O 1.21608 * 120.00023 * 353.27613 * 19 18 17 21 21 C 1.47419 * 119.99880 * 173.26728 * 19 18 17 22 22 C 1.36100 * 126.44528 * 172.94402 * 21 19 18 23 23 O 1.34262 * 106.94668 * 179.90438 * 22 21 19 24 24 C 1.34050 * 108.22572 * 0.36446 * 23 22 21 25 25 N 1.29928 * 109.24641 * 359.77214 * 24 23 22 26 26 C 1.47157 * 118.03710 * 309.46536 * 18 17 15 27 27 C 1.53301 * 108.38094 * 50.53349 * 26 18 17 28 28 O 1.42952 * 109.26830 * 307.72144 * 27 26 18 29 29 H 0.97006 * 119.99708 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00097 * 0.02562 * 9 7 2 31 31 H 1.08995 * 109.47424 * 60.00182 * 12 10 9 32 32 H 1.08995 * 109.47028 * 299.99653 * 12 10 9 33 33 H 1.00896 * 110.99719 * 303.95561 * 13 12 10 34 34 H 1.08998 * 109.46852 * 60.00018 * 14 13 12 35 35 H 1.09003 * 109.47413 * 300.00434 * 14 13 12 36 36 H 1.09001 * 109.68298 * 291.94738 * 17 15 14 37 37 H 1.08995 * 109.68320 * 52.47100 * 17 15 14 38 38 H 1.07997 * 126.52480 * 0.04621 * 22 21 19 39 39 H 1.07999 * 125.37321 * 179.80248 * 24 23 22 40 40 H 1.09001 * 109.68239 * 170.25796 * 26 18 17 41 41 H 1.08993 * 109.68021 * 290.77473 * 26 18 17 42 42 H 1.08998 * 109.51253 * 67.62730 * 27 26 18 43 43 H 1.09001 * 109.50761 * 187.72459 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0001 12 6 1.2436 -4.8629 0.0000 13 7 2.1982 -5.9796 -0.0005 14 6 1.4979 -7.2709 -0.0005 15 6 2.5228 -8.4069 -0.0004 16 1 3.1479 -8.3330 0.8895 17 6 1.7929 -9.7549 -0.0030 18 7 2.7888 -10.8215 -0.1917 19 6 2.8299 -11.8863 0.6335 20 8 2.1203 -11.9184 1.6206 21 6 3.7350 -13.0122 0.3395 22 6 3.9816 -14.0825 1.1433 23 8 4.8593 -14.8648 0.4949 24 6 5.1519 -14.2845 -0.6775 25 7 4.4856 -13.1741 -0.7838 26 6 3.7390 -10.6911 -1.3077 27 6 4.3741 -9.2973 -1.2415 28 8 3.3415 -8.3115 -1.1685 29 1 -0.4850 0.8401 -0.0004 30 1 0.3533 -2.3906 -0.0002 31 1 0.6173 -4.9205 -0.8902 32 1 0.6167 -4.9208 0.8897 33 1 2.8330 -5.9121 -0.7818 34 1 0.8727 -7.3451 -0.8903 35 1 0.8732 -7.3454 0.8896 36 1 1.2794 -9.8962 0.9481 37 1 1.0694 -9.7791 -0.8179 38 1 3.5514 -14.2683 2.1162 39 1 5.8334 -14.6781 -1.4171 40 1 4.5143 -11.4523 -1.2207 41 1 3.2121 -10.8104 -2.2543 42 1 5.0067 -9.2272 -0.3567 43 1 4.9766 -9.1291 -2.1342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280566987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:04 Heat of formation + Delta-G solvation = -96.156874 kcal Electronic energy + Delta-G solvation = -28376.195679 eV Core-core repulsion = 24037.001786 eV Total energy + Delta-G solvation = -4339.193893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.45996 -41.38832 -40.16973 -39.51445 -36.91022 -36.22026 -35.80851 -35.52216 -33.32438 -32.90993 -31.44521 -29.70826 -28.69863 -26.94319 -25.38128 -24.81300 -23.70435 -23.61005 -22.24326 -21.10581 -20.90940 -19.91204 -18.95934 -18.10849 -17.88535 -17.74309 -17.71927 -17.17307 -16.83783 -16.63394 -16.35430 -16.05765 -15.89185 -15.87903 -15.68670 -15.21710 -14.92383 -14.70168 -14.57324 -14.42319 -14.28698 -13.58537 -13.44358 -13.22278 -13.11141 -12.82991 -12.66353 -12.43256 -12.40005 -12.27368 -12.11118 -11.99826 -11.66106 -11.51647 -11.29532 -10.86174 -10.36065 -10.26557 -10.01508 -9.67480 -9.34271 -8.46653 -5.95433 0.04808 0.99275 1.36903 1.41929 1.56259 1.57538 1.85154 2.05020 2.09990 2.29551 2.67654 2.88199 2.96622 3.20451 3.44780 3.57152 3.81981 3.83578 3.90810 3.94947 4.06212 4.22186 4.31577 4.38056 4.43683 4.49147 4.51703 4.54952 4.59530 4.64325 4.66810 4.81435 4.82484 4.95306 5.13011 5.41232 5.46102 5.86177 6.06944 6.08041 6.15010 6.38036 6.43288 6.60410 6.85926 7.12704 7.56048 8.11747 8.70996 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.036882 B = 0.001714 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.989611 B =16328.181277 C =16696.149942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.064 3.936 13 N -0.682 5.682 14 C 0.072 3.928 15 C 0.090 3.910 16 H 0.055 0.945 17 C 0.089 3.911 18 N -0.601 5.601 19 C 0.597 3.403 20 O -0.570 6.570 21 C -0.105 4.105 22 C 0.035 3.965 23 O -0.196 6.196 24 C 0.205 3.795 25 N -0.495 5.495 26 C 0.059 3.941 27 C 0.046 3.954 28 O -0.391 6.391 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.348 0.652 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.249 0.751 39 H 0.304 0.696 40 H 0.150 0.850 41 H 0.079 0.921 42 H 0.045 0.955 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.066 -32.811 -3.246 33.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.511 6.511 12 C -0.068 4.068 13 N -0.315 5.315 14 C -0.057 4.057 15 C 0.031 3.969 16 H 0.073 0.927 17 C -0.035 4.035 18 N -0.333 5.333 19 C 0.386 3.614 20 O -0.450 6.450 21 C -0.223 4.223 22 C -0.040 4.040 23 O -0.081 6.081 24 C -0.023 4.023 25 N -0.224 5.224 26 C -0.063 4.063 27 C -0.031 4.031 28 O -0.310 6.310 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.167 0.833 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.265 0.735 39 H 0.319 0.681 40 H 0.167 0.833 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.438 -32.118 -2.715 32.869 hybrid contribution -0.527 0.521 -0.183 0.763 sum 5.911 -31.598 -2.898 32.276 Atomic orbital electron populations 1.69681 1.06810 1.29247 1.50338 1.26057 0.96585 1.02429 0.96253 0.84851 0.77968 0.77007 0.78363 1.19884 1.19473 1.19567 1.19711 0.92705 0.84070 1.49923 0.90411 1.41927 1.09349 1.04663 1.65061 1.20887 0.88246 0.86223 0.82178 1.90490 1.15983 1.87977 1.56634 1.21556 0.93955 0.87943 1.03325 1.60026 1.19041 1.00675 1.51777 1.21998 0.94429 0.86527 1.02763 1.22381 0.92442 0.93543 0.88550 0.92712 1.22281 0.91081 0.85447 1.04642 1.47987 1.34148 1.20653 1.30470 1.17198 0.81147 0.81332 0.81735 1.90801 1.45105 1.80776 1.28293 1.21513 1.05843 0.99785 0.95147 1.25670 0.90548 0.88455 0.99323 1.84520 1.48201 1.45913 1.29449 1.29386 0.98648 0.87727 0.86491 1.70497 1.10301 1.18825 1.22771 1.23301 0.94599 0.99780 0.88612 1.23163 0.89538 0.86911 1.03468 1.87939 1.45891 1.54527 1.42678 0.91277 0.76892 0.91379 0.87387 0.83295 0.92965 0.87892 0.88192 0.89080 0.73533 0.68127 0.83346 0.90293 0.93613 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.32 13.05 21.66 0.28 -50.04 16 2 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.70 29.55 68.60 2.03 45.73 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.33 -19.48 9.68 84.04 0.81 -18.67 16 8 H 0.08 4.85 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -30.23 5.29 -306.98 -1.62 -31.85 16 10 C 0.44 21.66 7.82 87.66 0.69 22.35 16 11 O -0.62 -36.18 15.78 -3.05 -0.05 -36.23 16 12 C 0.06 2.31 6.17 85.56 0.53 2.84 16 13 N -0.68 -23.40 6.13 -517.93 -3.17 -26.57 16 14 C 0.07 1.80 5.42 86.30 0.47 2.27 16 15 C 0.09 2.20 3.05 30.69 0.09 2.30 16 16 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 17 C 0.09 1.89 5.95 86.35 0.51 2.40 16 18 N -0.60 -12.92 3.02 -821.22 -2.48 -15.40 16 19 C 0.60 13.74 7.69 86.66 0.67 14.40 16 20 O -0.57 -16.10 16.37 -4.06 -0.07 -16.17 16 21 C -0.11 -1.77 6.67 40.41 0.27 -1.50 16 22 C 0.03 0.39 11.95 67.32 0.80 1.20 16 23 O -0.20 -1.52 10.73 0.33 0.00 -1.52 16 24 C 0.21 1.00 13.19 130.52 1.72 2.72 16 25 N -0.49 -6.25 7.87 -305.15 -2.40 -8.65 16 26 C 0.06 1.04 6.25 86.35 0.54 1.58 16 27 C 0.05 0.91 6.98 72.08 0.50 1.41 16 28 O -0.39 -10.08 9.73 -148.98 -1.45 -11.53 16 29 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 30 H 0.40 19.77 7.90 -92.71 -0.73 19.04 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 33 H 0.35 13.12 7.83 -89.70 -0.70 12.42 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.10 2.23 7.06 -2.39 -0.02 2.21 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.25 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.30 -2.07 8.06 -2.91 -0.02 -2.09 16 40 H 0.15 2.34 4.32 -6.93 -0.03 2.31 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -80.75 367.11 -1.22 -81.97 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: -0.37 Total: 37.23 kcal Atomic # 6 Polarization: 24.95 SS G_CDS: 8.07 Total: 33.02 kcal Atomic # 7 Polarization: -123.11 SS G_CDS: -9.39 Total: -132.50 kcal Atomic # 8 Polarization: -63.88 SS G_CDS: -1.56 Total: -65.45 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -80.75 -1.22 -81.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280566987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.186 kcal (2) G-P(sol) polarization free energy of solvation -80.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds