Wall clock time and date at job start Tue Mar 31 2020 20:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86796 * 120.00087 * 2 1 4 4 H 1.48501 * 109.47130 * 270.00022 * 3 2 1 5 5 H 1.48504 * 109.47493 * 30.00500 * 3 2 1 6 6 H 1.48504 * 109.47108 * 149.99945 * 3 2 1 7 7 C 1.38953 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00302 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00169 * 0.28134 * 7 2 1 10 10 C 1.34773 * 120.00141 * 179.72117 * 9 7 2 11 11 O 1.21286 * 120.00234 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99753 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47143 * 180.02562 * 12 10 9 14 14 C 1.46898 * 111.00010 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.46623 * 179.97438 * 14 13 12 16 16 H 1.09000 * 109.51483 * 304.99740 * 15 14 13 17 17 C 1.53303 * 109.50692 * 184.90092 * 15 14 13 18 18 N 1.47168 * 108.37320 * 187.82552 * 17 15 14 19 19 C 1.34776 * 120.94271 * 230.47277 * 18 17 15 20 20 O 1.21608 * 120.00150 * 356.19437 * 19 18 17 21 21 C 1.47427 * 119.99899 * 176.20023 * 19 18 17 22 22 C 1.36086 * 126.44764 * 186.66589 * 21 19 18 23 23 O 1.34260 * 106.95130 * 179.84179 * 22 21 19 24 24 C 1.34047 * 108.22245 * 0.41430 * 23 22 21 25 25 N 1.29935 * 109.24446 * 359.73980 * 24 23 22 26 26 C 1.47152 * 118.07492 * 50.45026 * 18 17 15 27 27 C 1.53293 * 108.38758 * 309.49712 * 26 18 17 28 28 O 1.42959 * 109.51414 * 65.10199 * 15 14 13 29 29 H 0.97002 * 119.99634 * 359.97438 * 1 2 3 30 30 H 0.97005 * 119.99666 * 359.71684 * 9 7 2 31 31 H 1.08999 * 109.47490 * 300.00146 * 12 10 9 32 32 H 1.09008 * 109.47032 * 60.00437 * 12 10 9 33 33 H 1.00899 * 110.99675 * 56.04708 * 13 12 10 34 34 H 1.08995 * 109.47002 * 299.99930 * 14 13 12 35 35 H 1.09000 * 109.47174 * 59.99998 * 14 13 12 36 36 H 1.08998 * 109.67928 * 307.49439 * 17 15 14 37 37 H 1.08990 * 109.68403 * 68.05179 * 17 15 14 38 38 H 1.08002 * 126.52654 * 359.97438 * 22 21 19 39 39 H 1.08008 * 125.37483 * 179.69489 * 24 23 22 40 40 H 1.09007 * 109.68432 * 189.77301 * 26 18 17 41 41 H 1.09003 * 109.71855 * 69.24163 * 26 18 17 42 42 H 1.08997 * 109.51352 * 292.37628 * 27 26 18 43 43 H 1.08999 * 109.55601 * 172.25039 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6527 0.7001 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3233 -2.3907 -0.0048 10 6 1.9972 -3.5579 -0.0099 11 8 3.2101 -3.5579 -0.0103 12 6 1.2436 -4.8629 -0.0152 13 7 2.1982 -5.9795 -0.0196 14 6 1.4978 -7.2708 -0.0254 15 6 2.5228 -8.4068 -0.0305 16 1 3.2042 -8.2786 -0.8716 17 6 1.7968 -9.7508 -0.1600 18 7 2.7805 -10.8293 0.0267 19 6 2.8760 -11.8411 -0.8585 20 8 2.0977 -11.9092 -1.7904 21 6 3.9238 -12.8655 -0.6969 22 6 4.2202 -13.8640 -1.5728 23 8 5.2360 -14.5624 -1.0409 24 6 5.5509 -14.0113 0.1398 25 7 4.7728 -12.9939 0.3586 26 6 3.6569 -10.7705 1.2073 27 6 4.2924 -9.3768 1.2690 28 8 3.2639 -8.3868 1.1918 29 1 -0.4850 0.8401 0.0004 30 1 0.3533 -2.3907 -0.0047 31 1 0.6172 -4.9244 0.8747 32 1 0.6167 -4.9169 -0.9053 33 1 2.8330 -5.9156 0.7621 34 1 0.8726 -7.3490 0.8640 35 1 0.8733 -7.3414 -0.9159 36 1 1.0225 -9.8248 0.6036 37 1 1.3463 -9.8309 -1.1492 38 1 3.7327 -14.0565 -2.5171 39 1 6.3280 -14.3586 0.8046 40 1 4.4377 -11.5265 1.1231 41 1 3.0711 -10.9470 2.1094 42 1 4.9803 -9.2531 0.4327 43 1 4.8359 -9.2648 2.2071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280566988.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:08 Heat of formation + Delta-G solvation = -94.591677 kcal Electronic energy + Delta-G solvation = -28396.047326 eV Core-core repulsion = 24056.921305 eV Total energy + Delta-G solvation = -4339.126021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.47881 -41.38177 -40.17276 -39.51432 -36.92200 -36.24465 -35.81242 -35.52385 -33.32513 -32.90181 -31.45820 -29.69673 -28.69471 -26.94720 -25.38815 -24.83466 -23.71009 -23.62735 -22.25222 -21.11430 -20.91854 -19.91222 -18.95087 -18.10591 -17.87783 -17.76452 -17.74519 -17.16369 -16.85248 -16.57539 -16.36238 -16.11538 -15.89405 -15.86624 -15.70351 -15.21428 -14.95195 -14.70912 -14.58814 -14.38997 -14.29045 -13.58929 -13.47220 -13.23043 -13.11216 -12.82894 -12.68673 -12.49843 -12.41679 -12.27505 -12.11637 -12.01284 -11.63186 -11.51174 -11.29141 -10.72723 -10.36382 -10.27414 -10.01812 -9.67520 -9.35849 -8.46584 -5.95471 0.04903 0.98358 1.38297 1.41767 1.54768 1.57360 1.84889 2.04849 2.10293 2.29437 2.67571 2.87327 2.95813 3.20483 3.45035 3.56258 3.82228 3.82588 3.90352 3.94844 4.07580 4.22387 4.31290 4.37399 4.43850 4.48778 4.51247 4.54463 4.58502 4.64231 4.66387 4.80875 4.81984 4.94848 5.13687 5.40874 5.57751 5.85652 6.06994 6.08396 6.14616 6.35743 6.43164 6.60201 6.86308 7.12416 7.55798 8.11445 8.70812 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033168 B = 0.001733 C = 0.001699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.981869 B =16152.013074 C =16479.428479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.335 4.335 8 H 0.078 0.922 9 N -0.572 5.572 10 C 0.437 3.563 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.683 5.683 14 C 0.072 3.928 15 C 0.090 3.910 16 H 0.055 0.945 17 C 0.089 3.911 18 N -0.600 5.600 19 C 0.595 3.405 20 O -0.570 6.570 21 C -0.104 4.104 22 C 0.036 3.964 23 O -0.195 6.195 24 C 0.209 3.791 25 N -0.495 5.495 26 C 0.038 3.962 27 C 0.048 3.952 28 O -0.393 6.393 29 H 0.278 0.722 30 H 0.397 0.603 31 H 0.068 0.932 32 H 0.108 0.892 33 H 0.347 0.653 34 H 0.052 0.948 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.249 0.751 39 H 0.305 0.695 40 H 0.168 0.832 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.860 -32.506 2.164 33.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.465 4.465 8 H 0.096 0.904 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.068 4.068 13 N -0.315 5.315 14 C -0.057 4.057 15 C 0.031 3.969 16 H 0.073 0.927 17 C -0.035 4.035 18 N -0.331 5.331 19 C 0.385 3.615 20 O -0.450 6.450 21 C -0.222 4.222 22 C -0.039 4.039 23 O -0.079 6.079 24 C -0.019 4.019 25 N -0.224 5.224 26 C -0.083 4.083 27 C -0.029 4.029 28 O -0.312 6.312 29 H 0.087 0.913 30 H 0.231 0.769 31 H 0.086 0.914 32 H 0.126 0.874 33 H 0.166 0.834 34 H 0.070 0.930 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.265 0.735 39 H 0.320 0.680 40 H 0.184 0.816 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.179 -31.866 1.688 32.709 hybrid contribution -0.547 0.598 0.191 0.833 sum 6.632 -31.268 1.880 32.019 Atomic orbital electron populations 1.69674 1.06810 1.29317 1.50235 1.26060 0.96590 1.02438 0.96233 0.84908 0.77864 0.76785 0.78640 1.19664 1.19400 1.19800 1.19676 0.92710 0.84063 1.50034 0.90396 1.41922 1.09351 1.04661 1.65020 1.20875 0.88246 0.86219 0.82216 1.90488 1.15973 1.87976 1.56671 1.21556 0.93950 0.87932 1.03336 1.60051 1.19073 1.00737 1.51656 1.21986 0.94467 0.86471 1.02782 1.22375 0.93571 0.93542 0.87420 0.92683 1.22271 0.91378 0.85245 1.04558 1.48003 1.37069 1.23060 1.24950 1.17208 0.82466 0.80610 0.81246 1.90801 1.43993 1.76730 1.33513 1.21508 1.02694 1.02009 0.95970 1.25656 0.88111 0.89939 1.00188 1.84523 1.41477 1.49784 1.32164 1.29420 0.99298 0.88579 0.84579 1.70138 1.07733 1.19464 1.25095 1.23706 0.97047 1.01014 0.86580 1.23123 0.89399 0.86690 1.03639 1.87941 1.49234 1.56342 1.37697 0.91268 0.76888 0.91390 0.87356 0.83395 0.92993 0.87819 0.89236 0.88272 0.73486 0.68002 0.81594 0.90608 0.93638 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.30 13.05 21.66 0.28 -50.02 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.67 29.55 68.60 2.03 45.70 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.34 -19.51 9.68 84.04 0.81 -18.70 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -30.20 5.29 -306.99 -1.62 -31.82 16 10 C 0.44 21.65 7.82 87.66 0.69 22.33 16 11 O -0.62 -36.16 15.78 -3.05 -0.05 -36.20 16 12 C 0.06 2.31 6.17 85.56 0.53 2.84 16 13 N -0.68 -23.42 6.12 -517.92 -3.17 -26.59 16 14 C 0.07 1.82 5.39 86.30 0.47 2.29 16 15 C 0.09 2.22 3.02 30.70 0.09 2.32 16 16 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 17 C 0.09 1.93 5.91 86.35 0.51 2.44 16 18 N -0.60 -13.08 3.02 -821.17 -2.48 -15.56 16 19 C 0.60 13.82 7.70 86.66 0.67 14.49 16 20 O -0.57 -16.18 16.38 -4.06 -0.07 -16.25 16 21 C -0.10 -1.76 6.74 40.41 0.27 -1.49 16 22 C 0.04 0.40 11.95 67.32 0.80 1.20 16 23 O -0.19 -1.47 10.73 0.38 0.00 -1.47 16 24 C 0.21 0.96 13.19 130.52 1.72 2.68 16 25 N -0.50 -6.17 7.71 -305.15 -2.35 -8.53 16 26 C 0.04 0.68 6.49 86.35 0.56 1.24 16 27 C 0.05 0.96 6.98 72.08 0.50 1.46 16 28 O -0.39 -10.15 9.91 -148.98 -1.48 -11.63 16 29 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 30 H 0.40 19.77 7.90 -92.70 -0.73 19.04 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.11 3.43 8.14 -2.38 -0.02 3.41 16 33 H 0.35 13.10 8.00 -89.70 -0.72 12.38 16 34 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.10 2.25 7.11 -2.39 -0.02 2.24 16 38 H 0.25 1.61 8.06 -2.91 -0.02 1.58 16 39 H 0.31 -2.20 8.06 -2.91 -0.02 -2.22 16 40 H 0.17 2.63 3.80 -44.70 -0.17 2.46 16 41 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 43 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -80.76 367.07 -1.34 -82.10 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: -0.53 Total: 37.43 kcal Atomic # 6 Polarization: 24.76 SS G_CDS: 8.09 Total: 32.85 kcal Atomic # 7 Polarization: -123.18 SS G_CDS: -9.34 Total: -132.53 kcal Atomic # 8 Polarization: -63.96 SS G_CDS: -1.59 Total: -65.55 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -80.76 -1.34 -82.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280566988.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.489 kcal (2) G-P(sol) polarization free energy of solvation -80.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds