Wall clock time and date at job start Tue Mar 31 2020 20:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 N 1.46498 * 109.44009 * 181.23934 * 12 11 10 14 14 C 1.34774 * 120.00360 * 84.79625 * 13 12 11 15 15 O 1.21587 * 120.00015 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00300 * 180.02562 * 14 13 12 17 17 N 1.40104 * 120.00219 * 359.97438 * 16 14 13 18 18 C 1.34773 * 120.00219 * 180.02562 * 17 16 14 19 19 O 1.21281 * 120.00234 * 0.02562 * 18 17 16 20 20 C 1.50706 * 119.99624 * 180.02562 * 18 17 16 21 21 C 1.53004 * 109.46825 * 180.02562 * 20 18 17 22 22 F 1.39904 * 109.47032 * 59.99933 * 21 20 18 23 23 F 1.39898 * 109.46976 * 180.02562 * 21 20 18 24 24 F 1.39898 * 109.46983 * 300.00479 * 21 20 18 25 25 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 26 26 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 27 27 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 29 29 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 30 30 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 31 31 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 32 32 H 1.08998 * 109.34532 * 301.12811 * 12 11 10 33 33 H 0.97005 * 119.99849 * 264.79501 * 13 12 11 34 34 H 0.96997 * 120.00334 * 180.02562 * 16 14 13 35 35 H 0.97006 * 119.99258 * 0.02562 * 17 16 14 36 36 H 1.08993 * 109.47393 * 300.00173 * 20 18 17 37 37 H 1.09001 * 109.46908 * 60.01001 * 20 18 17 38 38 H 1.09002 * 109.49555 * 178.74703 * 25 12 11 39 39 H 1.08992 * 109.52043 * 58.66705 * 25 12 11 40 40 H 1.08996 * 109.59017 * 246.20330 * 26 9 7 41 41 H 1.09009 * 109.58200 * 6.48305 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 7 1.0396 -5.6477 2.9303 14 6 -0.0052 -6.2698 3.5115 15 8 -1.1367 -6.0450 3.1277 16 7 0.2042 -7.1404 4.5188 17 7 1.5081 -7.3991 4.9615 18 6 1.7175 -8.2700 5.9685 19 8 0.7774 -8.8302 6.4912 20 6 3.1200 -8.5478 6.4449 21 6 3.0785 -9.5652 7.5870 22 9 2.4966 -10.7533 7.1321 23 9 4.3804 -9.8226 8.0297 24 9 2.3205 -9.0494 8.6436 25 6 2.0674 -4.6174 0.9645 26 6 1.8137 -3.6528 -0.1983 27 1 -0.4850 0.8400 -0.0004 28 1 0.0993 -1.3344 1.6687 29 1 -0.6775 -2.6380 0.7360 30 1 1.3427 -2.9695 3.0019 31 1 -0.3882 -3.3843 3.0516 32 1 -0.0283 -5.0410 1.2304 33 1 1.9424 -5.8268 3.2368 34 1 -0.5476 -7.5884 4.9369 35 1 2.2601 -6.9513 4.5432 36 1 3.7105 -8.9500 5.6218 37 1 3.5735 -7.6220 6.7991 38 1 2.3041 -5.6063 0.5718 39 1 2.9027 -4.2541 1.5630 40 1 1.0401 -4.0603 -0.8491 41 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318324275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:06 Heat of formation + Delta-G solvation = -157.167588 kcal Electronic energy + Delta-G solvation = -29441.668782 eV Core-core repulsion = 24557.972526 eV Total energy + Delta-G solvation = -4883.696256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.135 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -50.52463 -48.06423 -47.93657 -40.92979 -39.71266 -37.58498 -36.09866 -34.55363 -33.08638 -32.15369 -30.73941 -30.05991 -29.37134 -25.16417 -24.74944 -22.61908 -22.36671 -21.85571 -20.91190 -19.97073 -19.29303 -19.00616 -18.96044 -17.86614 -17.74989 -16.88980 -16.35872 -16.27458 -15.57708 -15.27741 -14.98436 -14.90452 -14.72296 -14.62859 -14.37161 -14.29723 -14.11334 -14.08254 -13.87655 -13.58633 -13.37273 -13.08512 -12.79493 -12.56510 -12.47393 -11.78900 -11.58077 -11.24218 -11.05419 -10.96150 -10.76830 -10.52766 -10.40063 -10.32075 -10.15358 -9.84703 -9.67322 -9.04673 -8.66818 -8.47461 -6.74662 -5.83562 -3.27310 1.22958 1.71480 2.20266 2.81212 3.01972 3.12146 3.30424 3.34787 3.41052 3.41670 3.48611 3.96548 4.36438 4.39887 4.44706 4.54852 5.14472 5.32060 5.36446 5.53099 5.69342 5.87624 5.96433 6.07966 6.11655 6.22003 6.34528 6.53499 6.56804 6.70454 6.79435 6.83415 6.86201 7.19760 7.31851 7.62758 7.74292 7.87787 8.34650 8.39885 9.15524 9.78600 10.34963 11.24985 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.021157 B = 0.002098 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.124551 B =13344.738097 C =13871.090806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.148 4.148 12 C 0.165 3.835 13 N -0.736 5.736 14 C 0.711 3.289 15 O -0.561 6.561 16 N -0.536 5.536 17 N -0.519 5.519 18 C 0.518 3.482 19 O -0.514 6.514 20 C -0.188 4.188 21 C 0.475 3.525 22 F -0.172 7.172 23 F -0.179 7.179 24 F -0.171 7.171 25 C -0.138 4.138 26 C 0.148 3.852 27 H 0.256 0.744 28 H 0.090 0.910 29 H 0.022 0.978 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.384 0.616 34 H 0.441 0.559 35 H 0.423 0.577 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.021 0.979 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.984 -18.467 12.966 24.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.387 4.387 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.188 4.188 12 C 0.062 3.938 13 N -0.391 5.391 14 C 0.410 3.590 15 O -0.434 6.434 16 N -0.295 5.295 17 N -0.270 5.270 18 C 0.302 3.698 19 O -0.387 6.387 20 C -0.231 4.231 21 C 0.420 3.580 22 F -0.153 7.153 23 F -0.161 7.161 24 F -0.153 7.153 25 C -0.179 4.179 26 C 0.021 3.979 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.218 0.782 34 H 0.288 0.712 35 H 0.265 0.735 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.039 0.961 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.403 -18.436 12.918 24.029 hybrid contribution 1.054 0.687 0.350 1.305 sum 9.456 -17.750 13.268 24.094 Atomic orbital electron populations 1.70018 1.05283 1.25788 1.53333 1.25074 0.95280 0.98501 1.00659 0.86367 0.78911 0.83348 0.78093 1.20856 1.21612 1.21037 1.19111 0.92514 0.84761 1.42328 0.91667 1.44096 1.35900 1.01525 1.49944 1.20765 0.88740 0.98098 0.87745 1.22607 1.00581 0.95038 1.00604 1.21057 0.99010 0.88001 0.85715 1.45620 1.07134 1.46999 1.39334 1.15817 0.85713 0.78515 0.78911 1.91068 1.21339 1.66630 1.64314 1.44797 0.97552 1.48875 1.38247 1.44583 1.00198 1.45702 1.36493 1.19857 0.90689 0.79560 0.79694 1.90888 1.43235 1.49075 1.55475 1.22864 0.97816 1.02647 0.99731 1.19559 0.73640 0.81513 0.83277 1.93248 1.84401 1.48998 1.88648 1.93224 1.37561 1.94677 1.90590 1.93250 1.76201 1.86465 1.59340 1.22356 0.96506 0.99875 0.99122 1.20837 0.98156 0.86728 0.92190 0.93438 0.89208 0.96000 0.92688 0.92632 0.89642 0.78244 0.71244 0.73482 0.83552 0.83505 0.92530 0.91826 0.96090 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 11.20 55.49 0.62 -25.07 16 2 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 3 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.26 -6.76 9.58 -15.06 -0.14 -6.91 16 8 H 0.07 1.66 7.88 -52.49 -0.41 1.25 16 9 N -0.59 -14.04 3.00 -172.31 -0.52 -14.56 16 10 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 11 C -0.15 -2.74 5.66 -26.59 -0.15 -2.89 16 12 C 0.17 2.58 2.41 -67.87 -0.16 2.42 16 13 N -0.74 -8.66 5.04 -58.62 -0.30 -8.96 16 14 C 0.71 9.63 8.64 -86.92 -0.75 8.88 16 15 O -0.56 -10.25 16.84 5.29 0.09 -10.16 16 16 N -0.54 -5.57 6.26 27.63 0.17 -5.40 16 17 N -0.52 -3.37 6.26 31.22 0.20 -3.17 16 18 C 0.52 3.69 7.71 -10.98 -0.08 3.60 16 19 O -0.51 -5.94 14.67 5.56 0.08 -5.85 16 20 C -0.19 -0.58 5.75 -27.88 -0.16 -0.74 16 21 C 0.48 3.19 2.89 37.16 0.11 3.30 16 22 F -0.17 -1.54 16.40 2.25 0.04 -1.51 16 23 F -0.18 -1.13 17.32 2.25 0.04 -1.10 16 24 F -0.17 -1.57 16.40 2.25 0.04 -1.53 16 25 C -0.14 -2.02 5.55 -26.61 -0.15 -2.16 16 26 C 0.15 2.83 6.52 -3.71 -0.02 2.80 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 29 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.54 7.58 -51.93 -0.39 1.14 16 33 H 0.38 3.03 6.52 -40.82 -0.27 2.76 16 34 H 0.44 4.89 8.10 -182.60 -1.48 3.41 16 35 H 0.42 1.36 6.70 -182.59 -1.22 0.14 16 36 H 0.15 -0.04 8.14 -51.93 -0.42 -0.46 16 37 H 0.15 0.00 8.14 -51.93 -0.42 -0.43 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.10 7.93 -51.92 -0.41 0.69 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -35.09 353.45 -7.89 -42.97 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -7.02 Total: 0.65 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: -1.62 Total: 12.33 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.18 Total: -57.15 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.17 Total: -16.02 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.11 Total: -4.13 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.09 -7.89 -42.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318324275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.194 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds