Wall clock time and date at job start Tue Mar 31 2020 20:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48503 * 109.47142 * 239.99837 * 3 2 1 5 5 H 1.48498 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47267 * 119.99771 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00123 * 163.08901 * 7 2 1 9 9 N 1.36934 * 120.00015 * 343.08772 * 7 2 1 10 10 C 1.46928 * 120.63265 * 331.83027 * 9 7 2 11 11 C 1.53201 * 108.89275 * 233.51651 * 10 9 7 12 12 C 1.53071 * 109.29371 * 305.57634 * 11 10 9 13 13 N 1.46498 * 109.44009 * 181.23934 * 12 11 10 14 14 C 1.34774 * 120.00360 * 84.79625 * 13 12 11 15 15 O 1.21587 * 120.00015 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00300 * 180.02562 * 14 13 12 17 17 N 1.40104 * 120.00219 * 359.97438 * 16 14 13 18 18 C 1.34773 * 120.00219 * 180.02562 * 17 16 14 19 19 O 1.21281 * 120.00234 * 0.02562 * 18 17 16 20 20 C 1.50706 * 119.99624 * 180.02562 * 18 17 16 21 21 C 1.53004 * 109.46825 * 180.02562 * 20 18 17 22 22 F 1.39904 * 109.47032 * 59.99933 * 21 20 18 23 23 F 1.39898 * 109.46976 * 180.02562 * 21 20 18 24 24 F 1.39898 * 109.46983 * 300.00479 * 21 20 18 25 25 C 1.53045 * 109.66047 * 61.15498 * 12 11 10 26 26 C 1.46932 * 120.63392 * 151.80754 * 9 7 2 27 27 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.58613 * 353.36947 * 10 9 7 29 29 H 1.08995 * 109.59058 * 113.65812 * 10 9 7 30 30 H 1.09002 * 109.49837 * 65.38934 * 11 10 9 31 31 H 1.09003 * 109.49550 * 185.48233 * 11 10 9 32 32 H 1.08998 * 109.34532 * 301.12811 * 12 11 10 33 33 H 0.97005 * 119.99849 * 264.79501 * 13 12 11 34 34 H 0.96997 * 120.00334 * 180.02562 * 16 14 13 35 35 H 0.97006 * 119.99258 * 0.02562 * 17 16 14 36 36 H 1.08993 * 109.47393 * 300.00173 * 20 18 17 37 37 H 1.09001 * 109.46908 * 60.01001 * 20 18 17 38 38 H 1.09002 * 109.49555 * 178.74703 * 25 12 11 39 39 H 1.08992 * 109.52043 * 58.66705 * 25 12 11 40 40 H 1.08996 * 109.59017 * 246.20330 * 26 9 7 41 41 H 1.09009 * 109.58200 * 6.48305 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 -0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0553 -1.2224 -0.2715 9 7 1.3701 -2.3622 0.3460 10 6 0.2261 -2.3400 1.2678 11 6 0.4939 -3.3200 2.4145 12 6 0.8120 -4.7009 1.8358 13 7 1.0396 -5.6477 2.9303 14 6 -0.0052 -6.2698 3.5115 15 8 -1.1367 -6.0450 3.1277 16 7 0.2042 -7.1404 4.5188 17 7 1.5081 -7.3991 4.9615 18 6 1.7175 -8.2700 5.9685 19 8 0.7774 -8.8302 6.4912 20 6 3.1200 -8.5478 6.4449 21 6 3.0785 -9.5652 7.5870 22 9 2.4966 -10.7533 7.1321 23 9 4.3804 -9.8226 8.0297 24 9 2.3205 -9.0494 8.6436 25 6 2.0674 -4.6174 0.9645 26 6 1.8137 -3.6528 -0.1983 27 1 -0.4850 0.8400 -0.0004 28 1 0.0993 -1.3344 1.6687 29 1 -0.6775 -2.6380 0.7360 30 1 1.3427 -2.9695 3.0019 31 1 -0.3882 -3.3843 3.0516 32 1 -0.0283 -5.0410 1.2304 33 1 1.9424 -5.8268 3.2368 34 1 -0.5476 -7.5884 4.9369 35 1 2.2601 -6.9513 4.5432 36 1 3.7105 -8.9500 5.6218 37 1 3.5735 -7.6220 6.7991 38 1 2.3041 -5.6063 0.5718 39 1 2.9027 -4.2541 1.5630 40 1 1.0401 -4.0603 -0.8491 41 1 2.7332 -3.5129 -0.7669 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318324275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:05 Heat of formation + Delta-G solvation = -184.318949 kcal Electronic energy + Delta-G solvation = -29442.846154 eV Core-core repulsion = 24557.972526 eV Total energy + Delta-G solvation = -4884.873628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.135 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -51.05189 -48.57397 -48.52789 -41.79687 -40.61278 -39.05267 -36.98041 -36.04714 -33.89445 -33.53557 -31.81011 -31.45177 -30.78924 -26.92356 -25.30573 -24.06592 -23.88919 -22.50365 -22.08277 -21.22812 -20.15741 -19.81297 -19.52818 -18.81325 -18.46307 -18.27659 -17.22438 -17.00163 -16.79911 -16.53683 -16.21178 -15.89303 -15.51847 -15.37213 -15.31745 -15.31269 -14.97958 -14.93073 -14.72395 -14.69368 -14.64505 -14.39823 -14.02311 -13.59946 -13.17075 -13.01648 -12.98529 -12.71784 -12.57256 -12.53220 -12.12251 -12.08930 -11.91065 -11.74783 -11.54015 -11.44857 -11.25897 -10.56011 -10.20808 -9.48314 -8.68446 -7.85007 -5.31214 0.56647 1.17675 1.50073 1.52121 1.58963 1.70223 1.92668 1.97312 2.54006 2.66919 2.83296 3.08784 3.31149 3.49397 3.69517 3.87832 3.90813 4.10455 4.18087 4.30289 4.36007 4.51467 4.70237 4.80040 4.84973 5.05346 5.10914 5.16058 5.19512 5.36458 5.41872 5.49505 5.56378 5.68109 5.74440 6.11546 6.41269 6.51580 7.11651 7.16282 7.33168 7.87797 8.39795 9.21819 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.021157 B = 0.002098 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.124551 B =13344.738097 C =13871.090806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.055 4.055 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.301 1.301 6 H -0.275 1.275 7 C -0.259 4.259 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.181 3.819 11 C -0.132 4.132 12 C 0.178 3.822 13 N -0.715 5.715 14 C 0.712 3.288 15 O -0.615 6.615 16 N -0.532 5.532 17 N -0.503 5.503 18 C 0.518 3.482 19 O -0.562 6.562 20 C -0.172 4.172 21 C 0.465 3.535 22 F -0.190 7.190 23 F -0.177 7.177 24 F -0.191 7.191 25 C -0.120 4.120 26 C 0.139 3.861 27 H 0.248 0.752 28 H 0.053 0.947 29 H -0.013 1.013 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.059 0.941 33 H 0.409 0.591 34 H 0.439 0.561 35 H 0.442 0.558 36 H 0.190 0.810 37 H 0.188 0.812 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.010 0.990 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.686 -19.576 13.510 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.250 4.250 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.227 1.227 6 H -0.201 1.201 7 C -0.389 4.389 8 H 0.094 0.906 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.172 4.172 12 C 0.073 3.927 13 N -0.372 5.372 14 C 0.412 3.588 15 O -0.491 6.491 16 N -0.288 5.288 17 N -0.257 5.257 18 C 0.304 3.696 19 O -0.439 6.439 20 C -0.213 4.213 21 C 0.410 3.590 22 F -0.172 7.172 23 F -0.158 7.158 24 F -0.173 7.173 25 C -0.159 4.159 26 C 0.013 3.987 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.005 0.995 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.247 0.753 34 H 0.285 0.715 35 H 0.287 0.713 36 H 0.208 0.792 37 H 0.205 0.795 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.028 0.972 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.214 -19.593 13.481 26.736 hybrid contribution -0.084 0.925 0.205 0.952 sum 12.130 -18.667 13.686 26.133 Atomic orbital electron populations 1.70201 1.06932 1.25869 1.55583 1.25872 0.95940 1.01815 1.01420 0.85335 0.77461 0.79098 0.78506 1.19907 1.22746 1.20076 1.19539 0.93051 0.85741 1.40616 0.90640 1.44351 1.35611 1.02737 1.50539 1.20469 0.87850 0.97374 0.88900 1.22340 1.00530 0.95860 0.98496 1.20636 0.99021 0.86715 0.86338 1.45058 1.08112 1.45788 1.38254 1.15819 0.85078 0.78732 0.79193 1.91042 1.23575 1.68385 1.66089 1.44499 0.99619 1.47587 1.37061 1.44607 0.98723 1.45862 1.36523 1.20629 0.91887 0.78334 0.78720 1.90887 1.45216 1.50800 1.56955 1.22993 0.95276 1.03476 0.99515 1.20151 0.73222 0.81743 0.83893 1.93212 1.84794 1.50397 1.88760 1.93228 1.37153 1.94722 1.90705 1.93212 1.76833 1.86618 1.60612 1.22145 0.95996 1.00615 0.97170 1.21072 0.97969 0.85545 0.94083 0.94277 0.92818 0.99463 0.91528 0.93715 0.92277 0.75310 0.71535 0.71280 0.79227 0.79490 0.88543 0.89864 0.97213 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.69 11.20 21.65 0.24 -55.44 16 2 C -0.06 -3.02 4.92 84.86 0.42 -2.61 16 3 Si 0.97 43.55 29.59 68.60 2.03 45.58 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.26 -13.52 9.58 84.03 0.81 -12.72 16 8 H 0.08 3.72 7.88 -2.91 -0.02 3.69 16 9 N -0.61 -28.86 3.00 -699.07 -2.09 -30.95 16 10 C 0.18 8.70 5.30 86.37 0.46 9.16 16 11 C -0.13 -4.84 5.66 30.69 0.17 -4.66 16 12 C 0.18 5.22 2.41 45.03 0.11 5.33 16 13 N -0.72 -14.63 5.04 -457.64 -2.31 -16.94 16 14 C 0.71 18.21 8.64 179.06 1.55 19.76 16 15 O -0.61 -22.64 16.84 -3.99 -0.07 -22.71 16 16 N -0.53 -10.06 6.26 -184.75 -1.16 -11.22 16 17 N -0.50 -4.71 6.26 -173.53 -1.09 -5.80 16 18 C 0.52 5.80 7.71 87.66 0.68 6.47 16 19 O -0.56 -12.34 14.67 -3.03 -0.04 -12.38 16 20 C -0.17 -0.28 5.75 29.85 0.17 -0.11 16 21 C 0.46 5.17 2.89 71.98 0.21 5.38 16 22 F -0.19 -3.19 16.40 44.97 0.74 -2.45 16 23 F -0.18 -1.79 17.32 44.97 0.78 -1.01 16 24 F -0.19 -3.30 16.40 44.97 0.74 -2.56 16 25 C -0.12 -3.03 5.55 30.67 0.17 -2.86 16 26 C 0.14 5.07 6.52 86.36 0.56 5.64 16 27 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.05 2.95 6.06 -2.39 -0.01 2.94 16 29 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 30 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 2.11 7.58 -2.39 -0.02 2.09 16 33 H 0.41 4.37 6.52 -92.70 -0.60 3.77 16 34 H 0.44 9.42 8.10 -213.32 -1.73 7.69 16 35 H 0.44 0.53 6.70 -213.31 -1.43 -0.90 16 36 H 0.19 -1.27 8.14 -2.39 -0.02 -1.29 16 37 H 0.19 -1.12 8.14 -2.39 -0.02 -1.14 16 38 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 40 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.07 2.39 7.93 -2.38 -0.02 2.37 16 Total: -1.00 -82.89 353.45 0.43 -82.46 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -2.64 Total: 4.63 kcal Atomic # 6 Polarization: 23.48 SS G_CDS: 5.30 Total: 28.78 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -6.40 Total: -120.35 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -0.11 Total: -35.09 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 2.25 Total: -6.02 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -82.89 0.43 -82.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318324275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.857 kcal (2) G-P(sol) polarization free energy of solvation -82.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds