Wall clock time and date at job start Tue Mar 31 2020 20:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99928 * 2 1 4 4 H 1.48501 * 109.46956 * 271.89047 * 3 2 1 5 5 H 1.48497 * 109.46915 * 31.88955 * 3 2 1 6 6 H 1.48498 * 109.47369 * 151.89007 * 3 2 1 7 7 C 1.38814 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00154 * 340.05344 * 7 2 1 9 9 N 1.36936 * 119.99938 * 160.05043 * 7 2 1 10 10 C 1.47154 * 120.98326 * 333.74415 * 9 7 2 11 11 C 1.53293 * 108.38902 * 230.51596 * 10 9 7 12 12 O 1.42965 * 109.21659 * 307.69880 * 11 10 9 13 13 C 1.42962 * 114.16752 * 62.58257 * 12 11 10 14 14 H 1.08994 * 109.51436 * 57.39412 * 13 12 11 15 15 C 1.53006 * 109.51084 * 177.49476 * 13 12 11 16 16 N 1.46499 * 109.46911 * 299.99670 * 15 13 12 17 17 C 1.34780 * 120.00072 * 180.02562 * 16 15 13 18 18 O 1.21278 * 119.99649 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00099 * 179.97438 * 17 16 15 20 20 O 1.42903 * 109.47240 * 179.97438 * 19 17 16 21 21 C 1.35952 * 116.99964 * 179.97438 * 20 19 17 22 22 C 1.38654 * 120.06402 * 0.02562 * 21 20 19 23 23 C 1.38188 * 119.97014 * 179.97438 * 22 21 20 24 24 C 1.38260 * 120.09505 * 359.97199 * 23 22 21 25 25 C 1.38256 * 120.12319 * 0.02607 * 24 23 22 26 26 C 1.38336 * 120.03081 * 0.25351 * 25 24 23 27 27 F 1.35098 * 120.04425 * 179.72787 * 26 25 24 28 28 C 1.47154 * 120.98462 * 153.72207 * 9 7 2 29 29 H 0.97007 * 120.00390 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.68430 * 110.78779 * 10 9 7 31 31 H 1.09002 * 109.70926 * 350.25514 * 10 9 7 32 32 H 1.08990 * 109.51904 * 187.77416 * 11 10 9 33 33 H 1.09000 * 109.51346 * 67.61667 * 11 10 9 34 34 H 1.08998 * 109.47259 * 180.02562 * 15 13 12 35 35 H 1.08999 * 109.47275 * 59.99609 * 15 13 12 36 36 H 0.97003 * 120.00519 * 359.97438 * 16 15 13 37 37 H 1.09004 * 109.47138 * 59.99870 * 19 17 16 38 38 H 1.08999 * 109.47148 * 299.99716 * 19 17 16 39 39 H 1.08002 * 120.01860 * 359.97438 * 22 21 20 40 40 H 1.08001 * 119.95263 * 179.97438 * 23 22 21 41 41 H 1.07993 * 119.93940 * 180.02562 * 24 23 22 42 42 H 1.08007 * 119.98633 * 179.97438 * 25 24 23 43 43 H 1.09005 * 109.67742 * 9.76282 * 28 9 7 44 44 H 1.08993 * 109.68493 * 249.21053 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4576 2.0695 -1.3993 5 1 1.4681 2.6408 0.7396 6 1 3.5671 1.4291 0.6596 7 6 2.0102 -1.2021 0.0005 8 1 1.5189 -2.1093 0.3200 9 7 3.3180 -1.2379 -0.4041 10 6 3.8471 -0.2387 -1.3460 11 6 4.5670 -0.9770 -2.4802 12 8 5.5166 -1.8875 -1.9207 13 6 4.9368 -2.9153 -1.1137 14 1 4.2112 -3.4754 -1.7034 15 6 6.0353 -3.8606 -0.6230 16 7 6.7087 -4.4662 -1.7746 17 6 7.7173 -5.3394 -1.5830 18 8 8.0677 -5.6235 -0.4572 19 6 8.4095 -5.9628 -2.7675 20 8 9.4356 -6.8456 -2.3094 21 6 10.1611 -7.4942 -3.2587 22 6 9.8914 -7.2849 -4.6026 23 6 10.6303 -7.9447 -5.5659 24 6 11.6390 -8.8132 -5.1918 25 6 11.9113 -9.0248 -3.8530 26 6 11.1709 -8.3713 -2.8842 27 9 11.4332 -8.5821 -1.5758 28 6 4.2359 -2.2762 0.0905 29 1 -0.4851 0.8401 -0.0004 30 1 4.5494 0.4162 -0.8303 31 1 3.0270 0.3517 -1.7547 32 1 5.0835 -0.2560 -3.1138 33 1 3.8393 -1.5295 -3.0746 34 1 5.5926 -4.6441 -0.0082 35 1 6.7597 -3.3001 -0.0320 36 1 6.4282 -4.2393 -2.6751 37 1 8.8525 -5.1797 -3.3830 38 1 7.6849 -6.5230 -3.3584 39 1 9.1041 -6.6064 -4.8963 40 1 10.4197 -7.7818 -6.6126 41 1 12.2152 -9.3272 -5.9468 42 1 12.6995 -9.7040 -3.5632 43 1 3.6729 -3.0356 0.6332 44 1 4.9774 -1.8265 0.7508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319333960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:20 Heat of formation + Delta-G solvation = -98.189112 kcal Electronic energy + Delta-G solvation = -28316.761757 eV Core-core repulsion = 23957.559777 eV Total energy + Delta-G solvation = -4359.201979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.05083 -40.70162 -39.64620 -38.77382 -37.66148 -35.17488 -34.52281 -31.92120 -31.47764 -31.16079 -30.66568 -28.89405 -27.56868 -25.66952 -23.37983 -23.23964 -22.88921 -22.04436 -20.88108 -20.00183 -18.98474 -17.78085 -17.40528 -17.02490 -16.92778 -16.60334 -16.32383 -16.02600 -15.69787 -15.58808 -15.32531 -14.83604 -14.64319 -14.49102 -14.31205 -14.11582 -13.72167 -13.65248 -13.31750 -13.07851 -12.94959 -12.51864 -12.43798 -12.17545 -11.99244 -11.79795 -11.65016 -11.57192 -11.31438 -10.94530 -10.50241 -10.36308 -10.06345 -9.89295 -9.61148 -9.51070 -9.42605 -9.20076 -8.67061 -8.65321 -7.12326 -6.05689 -3.43853 0.65192 0.78536 2.16099 2.38053 3.10951 3.21722 3.28957 3.41362 3.43808 3.83372 3.92738 4.20403 4.30681 4.41915 4.47740 4.54296 4.62012 4.66588 4.73481 4.75958 5.00514 5.11713 5.23491 5.27636 5.47348 5.49358 5.57105 5.63701 5.69915 5.71953 5.79215 5.89608 5.89828 6.03257 6.10253 6.13663 6.27770 6.35850 6.42481 6.61930 6.78868 7.29846 7.47671 7.76776 8.00536 8.19385 8.76890 9.57896 9.93061 11.09717 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031942 B = 0.001848 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.389092 B =15148.064628 C =15556.626602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.024 3.976 3 Si 0.885 3.115 4 H -0.288 1.288 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.264 4.264 8 H 0.089 0.911 9 N -0.607 5.607 10 C 0.088 3.912 11 C 0.050 3.950 12 O -0.387 6.387 13 C 0.062 3.938 14 H 0.066 0.934 15 C 0.132 3.868 16 N -0.715 5.715 17 C 0.513 3.487 18 O -0.518 6.518 19 C 0.040 3.960 20 O -0.281 6.281 21 C 0.098 3.902 22 C -0.185 4.185 23 C -0.089 4.089 24 C -0.130 4.130 25 C -0.117 4.117 26 C 0.072 3.928 27 F -0.129 7.129 28 C 0.124 3.876 29 H 0.264 0.736 30 H 0.035 0.965 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.405 0.595 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.143 0.857 43 H 0.075 0.925 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.072 -15.167 -14.424 29.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.715 3.285 4 H -0.216 1.216 5 H -0.229 1.229 6 H -0.195 1.195 7 C -0.392 4.392 8 H 0.107 0.893 9 N -0.331 5.331 10 C -0.038 4.038 11 C -0.028 4.028 12 O -0.306 6.306 13 C 0.003 3.997 14 H 0.084 0.916 15 C 0.009 3.991 16 N -0.369 5.369 17 C 0.297 3.703 18 O -0.392 6.392 19 C -0.038 4.038 20 O -0.193 6.193 21 C 0.052 3.948 22 C -0.204 4.204 23 C -0.107 4.107 24 C -0.149 4.149 25 C -0.135 4.135 26 C 0.052 3.948 27 F -0.108 7.108 28 C -0.002 4.002 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.240 0.760 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.161 0.839 43 H 0.093 0.907 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 21.350 -15.274 -13.304 29.430 hybrid contribution -0.159 1.289 -0.412 1.363 sum 21.191 -13.984 -13.716 28.857 Atomic orbital electron populations 1.69816 1.05667 1.26727 1.52592 1.25252 0.95265 0.97647 0.99335 0.86961 0.79962 0.84478 0.77088 1.21577 1.22938 1.19549 1.18908 0.84038 0.94990 1.41277 0.89348 1.44344 1.08340 1.31091 1.49362 1.22039 0.97738 0.92741 0.91240 1.23064 0.91899 0.92192 0.95633 1.87797 1.34067 1.41751 1.66972 1.22865 0.93718 0.88517 0.94621 0.91622 1.21470 0.94568 0.95228 0.87839 1.45721 1.35315 1.44713 1.11104 1.19883 0.80532 0.79864 0.90021 1.90780 1.63545 1.60539 1.24372 1.22555 0.90718 0.94080 0.96492 1.86236 1.45666 1.55941 1.31462 1.19097 0.92823 0.94164 0.88761 1.21225 1.03768 1.04571 0.90804 1.21046 0.94692 0.95361 0.99619 1.20960 0.98949 0.99840 0.95129 1.21068 0.99908 1.00187 0.92376 1.17031 0.97987 1.00607 0.79148 1.91539 1.93138 1.93658 1.32424 1.21475 0.93110 0.92609 0.93054 0.92594 0.94701 0.90023 0.89508 0.92957 0.89641 0.90390 0.76018 0.88577 0.88632 0.84290 0.84864 0.84754 0.83949 0.90656 0.94642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.03 13.97 55.49 0.78 -26.26 16 2 C 0.02 0.69 5.26 -17.43 -0.09 0.59 16 3 Si 0.88 21.82 24.28 -169.99 -4.13 17.69 16 4 H -0.29 -6.74 6.58 56.52 0.37 -6.37 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.27 -6.64 6.54 56.52 0.37 -6.27 16 7 C -0.26 -7.14 10.10 -15.06 -0.15 -7.29 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 9 N -0.61 -13.87 2.84 -171.83 -0.49 -14.36 16 10 C 0.09 1.83 4.38 -3.53 -0.02 1.82 16 11 C 0.05 0.82 6.99 37.31 0.26 1.08 16 12 O -0.39 -6.14 10.13 -35.23 -0.36 -6.50 16 13 C 0.06 0.95 2.87 -26.58 -0.08 0.87 16 14 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 15 C 0.13 1.75 5.37 -4.04 -0.02 1.72 16 16 N -0.72 -7.92 5.45 -60.29 -0.33 -8.25 16 17 C 0.51 6.39 7.91 -10.98 -0.09 6.31 16 18 O -0.52 -8.97 16.50 -14.35 -0.24 -9.20 16 19 C 0.04 0.35 5.22 36.01 0.19 0.54 16 20 O -0.28 -3.45 9.53 -39.50 -0.38 -3.83 16 21 C 0.10 1.00 6.69 -39.18 -0.26 0.73 16 22 C -0.18 -1.28 9.04 -39.45 -0.36 -1.64 16 23 C -0.09 -0.49 10.04 -39.59 -0.40 -0.89 16 24 C -0.13 -0.72 10.04 -39.57 -0.40 -1.12 16 25 C -0.12 -0.84 10.02 -39.54 -0.40 -1.24 16 26 C 0.07 0.75 7.31 -39.30 -0.29 0.46 16 27 F -0.13 -1.65 17.11 2.25 0.04 -1.61 16 28 C 0.12 2.32 6.02 -3.53 -0.02 2.30 16 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.04 0.74 6.86 -51.93 -0.36 0.39 16 31 H 0.08 1.83 4.61 -51.93 -0.24 1.59 16 32 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.41 3.49 8.35 -40.82 -0.34 3.15 16 37 H 0.10 0.59 7.66 -51.93 -0.40 0.19 16 38 H 0.10 0.56 7.66 -51.93 -0.40 0.16 16 39 H 0.14 0.63 6.30 -52.49 -0.33 0.30 16 40 H 0.13 0.40 8.06 -52.49 -0.42 -0.03 16 41 H 0.13 0.40 8.06 -52.49 -0.42 -0.03 16 42 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.08 1.36 7.96 -51.93 -0.41 0.95 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -35.16 366.09 -7.60 -42.76 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -5.90 Total: -0.22 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -2.11 Total: 4.26 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.04 Total: -48.86 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.97 Total: -19.53 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.13 Total: 17.69 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.16 -7.60 -42.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319333960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.433 kcal (2) G-P(sol) polarization free energy of solvation -35.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds