Wall clock time and date at job start Tue Mar 31 2020 20:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86804 * 119.99928 * 2 1 4 4 H 1.48501 * 109.46956 * 271.89047 * 3 2 1 5 5 H 1.48497 * 109.46915 * 31.88955 * 3 2 1 6 6 H 1.48498 * 109.47369 * 151.89007 * 3 2 1 7 7 C 1.38814 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00154 * 340.05344 * 7 2 1 9 9 N 1.36936 * 119.99938 * 160.05043 * 7 2 1 10 10 C 1.47154 * 120.98326 * 333.74415 * 9 7 2 11 11 C 1.53293 * 108.38902 * 230.51596 * 10 9 7 12 12 O 1.42965 * 109.21659 * 307.69880 * 11 10 9 13 13 C 1.42962 * 114.16752 * 62.58257 * 12 11 10 14 14 H 1.08994 * 109.51436 * 57.39412 * 13 12 11 15 15 C 1.53006 * 109.51084 * 177.49476 * 13 12 11 16 16 N 1.46499 * 109.46911 * 299.99670 * 15 13 12 17 17 C 1.34780 * 120.00072 * 180.02562 * 16 15 13 18 18 O 1.21278 * 119.99649 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00099 * 179.97438 * 17 16 15 20 20 O 1.42903 * 109.47240 * 179.97438 * 19 17 16 21 21 C 1.35952 * 116.99964 * 179.97438 * 20 19 17 22 22 C 1.38654 * 120.06402 * 0.02562 * 21 20 19 23 23 C 1.38188 * 119.97014 * 179.97438 * 22 21 20 24 24 C 1.38260 * 120.09505 * 359.97199 * 23 22 21 25 25 C 1.38256 * 120.12319 * 0.02607 * 24 23 22 26 26 C 1.38336 * 120.03081 * 0.25351 * 25 24 23 27 27 F 1.35098 * 120.04425 * 179.72787 * 26 25 24 28 28 C 1.47154 * 120.98462 * 153.72207 * 9 7 2 29 29 H 0.97007 * 120.00390 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.68430 * 110.78779 * 10 9 7 31 31 H 1.09002 * 109.70926 * 350.25514 * 10 9 7 32 32 H 1.08990 * 109.51904 * 187.77416 * 11 10 9 33 33 H 1.09000 * 109.51346 * 67.61667 * 11 10 9 34 34 H 1.08998 * 109.47259 * 180.02562 * 15 13 12 35 35 H 1.08999 * 109.47275 * 59.99609 * 15 13 12 36 36 H 0.97003 * 120.00519 * 359.97438 * 16 15 13 37 37 H 1.09004 * 109.47138 * 59.99870 * 19 17 16 38 38 H 1.08999 * 109.47148 * 299.99716 * 19 17 16 39 39 H 1.08002 * 120.01860 * 359.97438 * 22 21 20 40 40 H 1.08001 * 119.95263 * 179.97438 * 23 22 21 41 41 H 1.07993 * 119.93940 * 180.02562 * 24 23 22 42 42 H 1.08007 * 119.98633 * 179.97438 * 25 24 23 43 43 H 1.09005 * 109.67742 * 9.76282 * 28 9 7 44 44 H 1.08993 * 109.68493 * 249.21053 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4576 2.0695 -1.3993 5 1 1.4681 2.6408 0.7396 6 1 3.5671 1.4291 0.6596 7 6 2.0102 -1.2021 0.0005 8 1 1.5189 -2.1093 0.3200 9 7 3.3180 -1.2379 -0.4041 10 6 3.8471 -0.2387 -1.3460 11 6 4.5670 -0.9770 -2.4802 12 8 5.5166 -1.8875 -1.9207 13 6 4.9368 -2.9153 -1.1137 14 1 4.2112 -3.4754 -1.7034 15 6 6.0353 -3.8606 -0.6230 16 7 6.7087 -4.4662 -1.7746 17 6 7.7173 -5.3394 -1.5830 18 8 8.0677 -5.6235 -0.4572 19 6 8.4095 -5.9628 -2.7675 20 8 9.4356 -6.8456 -2.3094 21 6 10.1611 -7.4942 -3.2587 22 6 9.8914 -7.2849 -4.6026 23 6 10.6303 -7.9447 -5.5659 24 6 11.6390 -8.8132 -5.1918 25 6 11.9113 -9.0248 -3.8530 26 6 11.1709 -8.3713 -2.8842 27 9 11.4332 -8.5821 -1.5758 28 6 4.2359 -2.2762 0.0905 29 1 -0.4851 0.8401 -0.0004 30 1 4.5494 0.4162 -0.8303 31 1 3.0270 0.3517 -1.7547 32 1 5.0835 -0.2560 -3.1138 33 1 3.8393 -1.5295 -3.0746 34 1 5.5926 -4.6441 -0.0082 35 1 6.7597 -3.3001 -0.0320 36 1 6.4282 -4.2393 -2.6751 37 1 8.8525 -5.1797 -3.3830 38 1 7.6849 -6.5230 -3.3584 39 1 9.1041 -6.6064 -4.8963 40 1 10.4197 -7.7818 -6.6126 41 1 12.2152 -9.3272 -5.9468 42 1 12.6995 -9.7040 -3.5632 43 1 3.6729 -3.0356 0.6332 44 1 4.9774 -1.8265 0.7508 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319333960.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:19 Heat of formation + Delta-G solvation = -123.869052 kcal Electronic energy + Delta-G solvation = -28317.875322 eV Core-core repulsion = 23957.559777 eV Total energy + Delta-G solvation = -4360.315545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.84007 -41.45977 -40.64247 -40.00134 -38.30934 -36.67850 -35.84892 -33.69565 -32.92907 -31.67426 -31.33957 -29.85276 -28.98098 -27.06638 -24.85073 -24.13018 -23.54015 -23.24448 -22.01628 -21.33731 -19.62780 -19.01764 -18.53051 -18.07032 -17.80025 -17.54775 -17.37513 -17.23200 -17.04410 -16.53309 -16.03084 -15.88285 -15.74892 -15.65511 -15.45573 -15.35222 -15.29268 -14.84516 -14.29596 -14.07440 -14.01758 -13.69830 -13.57916 -13.52181 -13.22736 -12.97554 -12.66470 -12.40381 -12.34463 -12.16506 -12.14026 -12.08446 -11.58756 -11.40505 -11.17391 -11.06711 -10.53043 -10.22647 -9.93558 -9.25366 -9.00186 -8.20945 -5.55060 0.13758 0.26145 1.25260 1.39670 1.41150 1.45114 1.47944 2.36425 2.48377 2.61865 2.68181 2.99236 3.19083 3.26667 3.51377 3.81291 3.88663 3.90571 3.99064 4.03878 4.07353 4.15222 4.26804 4.29751 4.33593 4.35195 4.48097 4.52136 4.54352 4.68005 4.76311 4.87688 4.91979 4.98652 5.10309 5.12167 5.26197 5.27438 5.44487 5.66918 5.75933 6.06387 6.16698 6.18999 6.45017 6.79847 7.10767 7.52016 7.91937 8.98216 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031942 B = 0.001848 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.389092 B =15148.064628 C =15556.626602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.033 4.033 3 Si 0.947 3.053 4 H -0.266 1.266 5 H -0.311 1.311 6 H -0.269 1.269 7 C -0.252 4.252 8 H 0.058 0.942 9 N -0.622 5.622 10 C 0.078 3.922 11 C 0.060 3.940 12 O -0.381 6.381 13 C 0.079 3.921 14 H 0.074 0.926 15 C 0.140 3.860 16 N -0.701 5.701 17 C 0.511 3.489 18 O -0.576 6.576 19 C 0.043 3.957 20 O -0.322 6.322 21 C 0.074 3.926 22 C -0.182 4.182 23 C -0.082 4.082 24 C -0.125 4.125 25 C -0.119 4.119 26 C 0.027 3.973 27 F -0.156 7.156 28 C 0.116 3.884 29 H 0.263 0.737 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.123 0.877 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.421 0.579 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.167 0.833 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.073 0.927 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.091 -15.225 -18.253 33.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.228 4.228 3 Si 0.776 3.224 4 H -0.192 1.192 5 H -0.240 1.240 6 H -0.194 1.194 7 C -0.381 4.381 8 H 0.076 0.924 9 N -0.348 5.348 10 C -0.047 4.047 11 C -0.018 4.018 12 O -0.300 6.300 13 C 0.020 3.980 14 H 0.092 0.908 15 C 0.016 3.984 16 N -0.355 5.355 17 C 0.297 3.703 18 O -0.455 6.455 19 C -0.035 4.035 20 O -0.235 6.235 21 C 0.028 3.972 22 C -0.201 4.201 23 C -0.100 4.100 24 C -0.143 4.143 25 C -0.137 4.137 26 C 0.007 3.993 27 F -0.135 7.135 28 C -0.009 4.009 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.141 0.859 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.259 0.741 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.184 0.816 40 H 0.186 0.814 41 H 0.184 0.816 42 H 0.174 0.826 43 H 0.091 0.909 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 23.409 -15.337 -17.200 32.849 hybrid contribution -0.759 1.202 0.735 1.600 sum 22.650 -14.135 -16.464 31.367 Atomic orbital electron populations 1.69941 1.07273 1.27340 1.55324 1.25864 0.95857 1.00885 1.00198 0.85948 0.78210 0.80234 0.78021 1.19175 1.24040 1.19444 1.18859 0.85804 0.93829 1.39614 0.92417 1.44464 1.07522 1.32414 1.50354 1.22166 0.97441 0.92795 0.92269 1.23025 0.92186 0.92551 0.94013 1.87823 1.33849 1.41631 1.66704 1.22634 0.94128 0.88351 0.92934 0.90814 1.21227 0.93815 0.94863 0.88494 1.45541 1.34704 1.43996 1.11248 1.20589 0.80083 0.79180 0.90423 1.90759 1.65279 1.62494 1.26933 1.22713 0.90996 0.95000 0.94744 1.86163 1.46839 1.57003 1.33505 1.19374 0.93196 0.94827 0.89810 1.21580 1.04350 1.04749 0.89388 1.21533 0.93533 0.93938 1.01016 1.21408 0.98821 0.99304 0.94759 1.21346 0.99743 0.99887 0.92761 1.17642 1.00051 1.02885 0.78698 1.91453 1.93548 1.94100 1.34432 1.21663 0.92625 0.91809 0.94842 0.92797 0.94844 0.91688 0.85900 0.92384 0.89471 0.91566 0.74142 0.85328 0.85135 0.81571 0.81436 0.81630 0.82630 0.90858 0.94614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.40 13.97 21.65 0.30 -58.10 16 2 C -0.03 -1.87 5.26 84.86 0.45 -1.42 16 3 Si 0.95 45.35 24.28 68.60 1.67 47.02 16 4 H -0.27 -11.63 6.58 99.48 0.65 -10.97 16 5 H -0.31 -15.31 7.11 99.48 0.71 -14.60 16 6 H -0.27 -12.69 6.54 99.48 0.65 -12.03 16 7 C -0.25 -13.83 10.10 84.03 0.85 -12.98 16 8 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 9 N -0.62 -28.06 2.84 -697.55 -1.98 -30.03 16 10 C 0.08 3.09 4.38 86.35 0.38 3.47 16 11 C 0.06 1.76 6.99 72.08 0.50 2.26 16 12 O -0.38 -10.81 10.13 -148.98 -1.51 -12.32 16 13 C 0.08 2.23 2.87 30.69 0.09 2.32 16 14 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 15 C 0.14 3.51 5.37 86.38 0.46 3.97 16 16 N -0.70 -13.92 5.45 -463.05 -2.52 -16.44 16 17 C 0.51 12.11 7.91 87.66 0.69 12.80 16 18 O -0.58 -20.32 16.50 16.01 0.26 -20.05 16 19 C 0.04 0.65 5.22 71.24 0.37 1.03 16 20 O -0.32 -7.83 9.53 -73.97 -0.71 -8.54 16 21 C 0.07 1.44 6.69 22.53 0.15 1.59 16 22 C -0.18 -1.93 9.04 22.36 0.20 -1.73 16 23 C -0.08 -0.56 10.04 22.26 0.22 -0.34 16 24 C -0.13 -0.96 10.04 22.28 0.22 -0.74 16 25 C -0.12 -1.58 10.02 22.30 0.22 -1.36 16 26 C 0.03 0.57 7.31 22.45 0.16 0.74 16 27 F -0.16 -4.34 17.11 44.97 0.77 -3.57 16 28 C 0.12 4.26 6.02 86.35 0.52 4.78 16 29 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 30 H 0.03 1.34 6.86 -2.39 -0.02 1.33 16 31 H 0.07 2.79 4.61 -2.39 -0.01 2.78 16 32 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 34 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.42 5.72 8.35 -92.71 -0.77 4.94 16 37 H 0.13 1.08 7.66 -2.39 -0.02 1.06 16 38 H 0.13 1.03 7.66 -2.39 -0.02 1.01 16 39 H 0.17 0.70 6.30 -2.91 -0.02 0.68 16 40 H 0.17 0.01 8.06 -2.91 -0.02 -0.01 16 41 H 0.17 0.22 8.06 -2.91 -0.02 0.19 16 42 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 43 H 0.07 2.67 7.96 -2.38 -0.02 2.65 16 44 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -81.46 366.09 1.94 -79.51 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.16 Total: 8.14 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: 5.50 Total: 14.38 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -4.20 Total: -104.57 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -1.95 Total: -40.91 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.77 Total: -3.57 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.67 Total: 47.02 kcal Total: -81.46 1.94 -79.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319333960.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.357 kcal (2) G-P(sol) polarization free energy of solvation -81.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds