Wall clock time and date at job start Tue Mar 31 2020 21:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 116.99867 * 2 1 4 4 O 1.20823 * 120.00591 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00024 * 180.02562 * 3 2 1 6 6 C 1.52992 * 109.47274 * 179.97438 * 5 3 2 7 7 N 1.46506 * 109.47161 * 179.97438 * 6 5 3 8 8 C 1.34773 * 119.99968 * 179.97438 * 7 6 5 9 9 O 1.21363 * 120.00428 * 359.73058 * 8 7 6 10 10 C 1.49346 * 120.00023 * 180.02562 * 8 7 6 11 11 O 1.21386 * 119.99415 * 359.72870 * 10 8 7 12 12 N 1.34777 * 120.00052 * 179.73002 * 10 8 7 13 13 C 1.39925 * 119.99564 * 180.02562 * 12 10 8 14 14 C 1.40463 * 125.98615 * 359.71572 * 13 12 10 15 15 C 1.35210 * 107.86850 * 179.88944 * 14 13 12 16 16 C 1.50704 * 126.06075 * 180.15285 * 15 14 13 17 17 N 1.34987 * 107.87920 * 0.36572 * 15 14 13 18 18 C 1.46492 * 125.97441 * 179.73077 * 17 15 14 19 19 C 1.50706 * 109.47532 * 270.01787 * 18 17 15 20 20 H 1.08004 * 119.99218 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00367 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00044 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00060 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47527 * 89.99750 * 23 21 19 25 25 H 1.48495 * 109.46879 * 210.00135 * 23 21 19 26 26 H 1.48506 * 109.46841 * 329.99417 * 23 21 19 27 27 N 1.31273 * 125.97739 * 180.02562 * 13 12 10 28 28 H 1.09001 * 109.47271 * 60.00074 * 1 2 3 29 29 H 1.09002 * 109.47225 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47081 * 299.99862 * 1 2 3 31 31 H 1.09004 * 109.46762 * 59.99795 * 5 3 2 32 32 H 1.08998 * 109.46924 * 300.00456 * 5 3 2 33 33 H 1.09004 * 109.47116 * 60.00351 * 6 5 3 34 34 H 1.08998 * 109.47794 * 300.00263 * 6 5 3 35 35 H 0.96998 * 119.99507 * 0.02562 * 7 6 5 36 36 H 0.96996 * 119.99887 * 359.97438 * 12 10 8 37 37 H 1.07998 * 126.06084 * 0.02652 * 14 13 12 38 38 H 1.08997 * 109.47230 * 270.25196 * 16 15 14 39 39 H 1.09000 * 109.47408 * 30.25213 * 16 15 14 40 40 H 1.09003 * 109.46794 * 150.24910 * 16 15 14 41 41 H 1.08998 * 109.47231 * 30.01867 * 18 17 15 42 42 H 1.08999 * 109.47200 * 150.01786 * 18 17 15 43 43 H 0.97001 * 120.00495 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7420 -0.0011 7 7 5.4632 2.8187 -0.0011 8 6 6.0750 4.0195 -0.0020 9 8 5.4141 5.0374 -0.0078 10 6 7.5664 4.0977 -0.0025 11 8 8.2274 3.0796 0.0029 12 7 8.1783 5.2986 -0.0089 13 6 9.5756 5.3717 -0.0100 14 6 10.4592 4.2799 0.0008 15 6 11.7206 4.7669 -0.0068 16 6 12.9870 3.9499 -0.0030 17 7 11.6444 6.1146 -0.0137 18 6 12.7795 7.0406 -0.0176 19 6 13.1682 7.3651 1.4018 20 1 12.6242 6.9250 2.2246 21 6 14.2180 8.2236 1.6501 22 7 14.8807 8.7590 0.6483 23 14 14.7001 8.6251 3.4096 24 1 15.7134 7.6472 3.8808 25 1 15.2705 9.9950 3.4661 26 1 13.4995 8.5526 4.2806 27 7 10.2902 6.4729 -0.0155 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9557 0.7809 -0.8909 32 1 3.9564 0.7805 0.8891 33 1 3.6108 3.2363 0.8890 34 1 3.6101 3.2360 -0.8910 35 1 5.9914 2.0051 -0.0011 36 1 7.6500 6.1120 -0.0136 37 1 10.1805 3.2365 0.0110 38 1 13.2926 3.7582 1.0255 39 1 12.8097 3.0025 -0.5120 40 1 13.7746 4.4983 -0.5200 41 1 13.6239 6.5782 -0.5288 42 1 12.4987 7.9574 -0.5360 43 1 15.6196 9.3627 0.8229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319671963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:21 Heat of formation + Delta-G solvation = -98.676981 kcal Electronic energy + Delta-G solvation = -27597.647589 eV Core-core repulsion = 23258.344416 eV Total energy + Delta-G solvation = -4339.303173 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.51281 -41.70977 -41.41145 -39.73905 -37.77391 -36.94207 -36.18489 -35.29921 -33.07832 -32.67154 -32.49226 -29.05138 -28.65035 -27.90504 -26.93770 -25.15786 -24.24746 -22.32830 -21.95030 -21.39062 -20.92170 -19.28981 -18.81101 -18.78213 -18.10123 -17.83062 -17.60732 -17.26457 -17.23822 -16.83650 -16.38976 -16.30267 -16.04588 -15.69350 -15.20043 -14.90043 -14.75347 -14.39279 -14.31009 -14.04455 -13.81585 -13.72298 -13.56462 -13.29874 -13.14865 -12.99453 -12.80335 -12.67128 -12.63573 -12.62969 -12.24054 -12.17356 -11.81572 -11.67425 -11.56555 -11.43185 -10.83709 -10.72397 -10.44685 -9.65429 -9.22495 -8.33109 -6.50239 0.03198 0.77248 1.08761 1.12386 1.38294 1.39823 1.50089 1.57674 1.71373 1.95837 2.24270 2.34383 2.60944 2.97516 3.22262 3.47100 3.81920 3.91230 3.97663 4.12526 4.31114 4.34230 4.41964 4.43841 4.66611 4.72082 4.73324 4.74226 4.76591 4.86199 4.93010 4.96291 5.01137 5.09427 5.21144 5.36121 5.53689 5.79426 5.80303 5.82466 6.14672 6.23700 6.55377 6.61447 6.65570 6.77309 6.95221 7.20809 8.73300 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028756 B = 0.001679 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.473258 B =16674.282341 C =16985.947914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.467 3.533 4 O -0.542 6.542 5 C -0.117 4.117 6 C 0.129 3.871 7 N -0.677 5.677 8 C 0.526 3.474 9 O -0.536 6.536 10 C 0.519 3.481 11 O -0.502 6.502 12 N -0.601 5.601 13 C 0.266 3.734 14 C -0.291 4.291 15 C 0.090 3.910 16 C -0.083 4.083 17 N -0.338 5.338 18 C 0.273 3.727 19 C -0.554 4.554 20 H 0.050 0.950 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.971 3.029 24 H -0.263 1.263 25 H -0.276 1.276 26 H -0.277 1.277 27 N -0.355 5.355 28 H 0.061 0.939 29 H 0.131 0.869 30 H 0.060 0.940 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.429 0.571 36 H 0.428 0.572 37 H 0.179 0.821 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.024 0.976 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.109 -22.285 -2.100 31.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.312 3.688 4 O -0.432 6.432 5 C -0.154 4.154 6 C 0.006 3.994 7 N -0.332 5.332 8 C 0.305 3.695 9 O -0.413 6.413 10 C 0.300 3.700 11 O -0.375 6.375 12 N -0.251 5.251 13 C 0.012 3.988 14 C -0.321 4.321 15 C -0.040 4.040 16 C -0.140 4.140 17 N -0.121 5.121 18 C 0.154 3.846 19 C -0.592 4.592 20 H 0.068 0.932 21 C -0.177 4.177 22 N -0.556 5.556 23 Si 0.795 3.205 24 H -0.188 1.188 25 H -0.201 1.201 26 H -0.202 1.202 27 N -0.186 5.186 28 H 0.080 0.920 29 H 0.149 0.851 30 H 0.079 0.921 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.268 0.732 36 H 0.266 0.734 37 H 0.196 0.804 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.042 0.958 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.183 -20.566 -2.172 30.328 hybrid contribution 0.007 0.341 0.705 0.783 sum -22.177 -20.226 -1.467 30.051 Atomic orbital electron populations 1.23542 0.74795 1.05703 1.02485 1.86488 1.24907 1.32620 1.83636 1.23823 0.92553 0.81155 0.71313 1.90735 1.68254 1.37463 1.46744 1.21491 0.86868 0.97018 1.10048 1.21199 0.77622 0.96601 1.04025 1.45424 1.08022 1.07998 1.71772 1.19418 0.86810 0.84919 0.78332 1.90829 1.66208 1.35427 1.48816 1.20250 0.89255 0.82879 0.77600 1.90691 1.66044 1.34231 1.46546 1.42117 1.02314 1.10598 1.70034 1.19194 0.84483 0.93061 1.02042 1.21476 0.89040 1.00408 1.21205 1.21827 0.98853 0.84236 0.99121 1.20504 0.90578 0.98845 1.04118 1.48849 1.03654 1.05679 1.53904 1.19293 0.79909 0.87492 0.97857 1.21436 1.16539 1.29471 0.91770 0.93153 1.25704 0.95305 0.94568 1.02112 1.69995 1.21629 1.31031 1.32895 0.85365 0.78407 0.78101 0.78668 1.18751 1.20058 1.20230 1.77253 0.88752 1.21632 1.30948 0.92036 0.85101 0.92079 0.83539 0.83615 0.90777 0.90666 0.73182 0.73374 0.80399 0.89650 0.87063 0.91357 0.92589 0.95807 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 113.37 1.20 1.39 16 2 O -0.36 -3.77 10.57 -51.34 -0.54 -4.31 16 3 C 0.47 5.69 7.96 71.24 0.57 6.26 16 4 O -0.54 -10.86 15.73 21.97 0.35 -10.52 16 5 C -0.12 -0.60 5.92 29.85 0.18 -0.42 16 6 C 0.13 1.57 4.96 86.38 0.43 2.00 16 7 N -0.68 -9.22 5.55 -464.52 -2.58 -11.79 16 8 C 0.53 11.67 7.89 87.24 0.69 12.36 16 9 O -0.54 -14.93 16.48 -3.29 -0.05 -14.99 16 10 C 0.52 13.87 7.85 87.24 0.69 14.56 16 11 O -0.50 -13.96 13.60 -3.36 -0.05 -14.00 16 12 N -0.60 -19.11 5.43 -308.89 -1.68 -20.79 16 13 C 0.27 10.59 8.10 133.40 1.08 11.67 16 14 C -0.29 -10.98 9.51 22.11 0.21 -10.77 16 15 C 0.09 3.59 6.92 41.38 0.29 3.88 16 16 C -0.08 -2.53 10.11 71.24 0.72 -1.81 16 17 N -0.34 -16.05 3.59 -338.46 -1.22 -17.26 16 18 C 0.27 14.27 5.99 85.64 0.51 14.78 16 19 C -0.55 -30.78 9.39 25.60 0.24 -30.54 16 20 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 21 C 0.02 1.32 5.46 84.65 0.46 1.78 16 22 N -0.92 -51.45 13.29 21.44 0.28 -51.17 16 23 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 27 N -0.36 -16.69 12.60 -54.54 -0.69 -17.38 16 28 H 0.06 0.48 8.13 -2.39 -0.02 0.46 16 29 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.06 0.48 8.13 -2.39 -0.02 0.47 16 31 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 32 H 0.15 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 34 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 35 H 0.43 3.69 7.94 -92.71 -0.74 2.95 16 36 H 0.43 12.68 8.29 -92.71 -0.77 11.91 16 37 H 0.18 6.01 5.91 -2.91 -0.02 5.99 16 38 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.07 2.18 7.07 -2.39 -0.02 2.17 16 41 H 0.06 2.86 7.04 -2.39 -0.02 2.85 16 42 H 0.02 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -75.87 382.00 2.69 -73.18 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -0.42 Total: 19.04 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 7.26 Total: 25.13 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -5.87 Total: -118.39 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -0.30 Total: -43.81 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -75.87 2.69 -73.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319671963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.493 kcal (2) G-P(sol) polarization free energy of solvation -75.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds