Wall clock time and date at job start Tue Mar 31 2020 22:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.62881 * 2 1 4 4 O 1.43757 * 109.63123 * 120.39252 * 2 1 3 5 5 C 1.44781 * 104.81570 * 95.56782 * 4 2 1 6 6 C 1.54918 * 101.72335 * 36.10526 * 5 4 2 7 7 H 1.08992 * 110.69460 * 83.00745 * 6 5 4 8 8 C 1.52998 * 110.69563 * 206.04228 * 6 5 4 9 9 N 1.46495 * 109.47333 * 184.99462 * 8 6 5 10 10 C 1.34774 * 120.00429 * 179.97438 * 9 8 6 11 11 O 1.21367 * 119.99666 * 0.02562 * 10 9 8 12 12 C 1.49308 * 120.00245 * 180.02562 * 10 9 8 13 13 O 1.21407 * 119.99593 * 359.97438 * 12 10 9 14 14 N 1.34770 * 119.99886 * 179.72492 * 12 10 9 15 15 C 1.40294 * 120.00114 * 180.26994 * 14 12 10 16 16 C 1.40723 * 126.09769 * 0.02562 * 15 14 12 17 17 N 1.30882 * 108.37509 * 179.97438 * 16 15 14 18 18 N 1.40061 * 108.43650 * 0.02562 * 17 16 15 19 19 C 1.37294 * 126.05236 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99292 * 174.11292 * 19 18 17 21 21 C 1.39002 * 120.00311 * 354.10865 * 19 18 17 22 22 N 1.31284 * 119.99672 * 5.92153 * 21 19 18 23 23 Si 1.86795 * 120.00302 * 185.92050 * 21 19 18 24 24 H 1.48496 * 109.47401 * 94.97948 * 23 21 19 25 25 H 1.48494 * 109.47254 * 214.98298 * 23 21 19 26 26 H 1.48506 * 109.47035 * 334.97673 * 23 21 19 27 27 C 1.35789 * 126.10507 * 179.71343 * 15 14 12 28 28 O 1.43364 * 109.63672 * 239.75648 * 2 1 3 29 29 H 1.09002 * 109.47237 * 301.06237 * 1 2 3 30 30 H 1.09002 * 109.46891 * 61.06467 * 1 2 3 31 31 H 1.09003 * 109.47257 * 181.06174 * 1 2 3 32 32 H 1.09000 * 109.47618 * 178.93425 * 3 2 1 33 33 H 1.08998 * 109.47258 * 298.93767 * 3 2 1 34 34 H 1.09003 * 109.47288 * 58.93763 * 3 2 1 35 35 H 1.09003 * 110.97780 * 277.99254 * 5 4 2 36 36 H 1.09007 * 111.01122 * 154.23038 * 5 4 2 37 37 H 1.09009 * 109.47235 * 64.99683 * 8 6 5 38 38 H 1.08995 * 109.47313 * 305.00058 * 8 6 5 39 39 H 0.97004 * 119.99737 * 0.02562 * 9 8 6 40 40 H 0.97004 * 120.00137 * 0.27313 * 14 12 10 41 41 H 1.07996 * 125.81211 * 359.96808 * 16 15 14 42 42 H 0.97004 * 120.00006 * 180.02562 * 22 21 19 43 43 H 1.08001 * 126.24414 * 0.03489 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 8 2.0129 -0.6850 1.1679 5 6 2.2652 -2.0400 0.7246 6 6 2.7885 -1.8079 -0.7149 7 1 3.8515 -1.5672 -0.7042 8 6 2.5224 -3.0335 -1.5912 9 7 3.1314 -2.8336 -2.9085 10 6 3.0252 -3.7898 -3.8523 11 8 2.4244 -4.8164 -3.6110 12 6 3.6464 -3.5862 -5.1946 13 8 4.2469 -2.5591 -5.4360 14 7 3.5448 -4.5448 -6.1365 15 6 4.1334 -4.3560 -7.3959 16 6 4.8561 -3.2224 -7.8117 17 7 5.2483 -3.4129 -9.0458 18 7 4.7937 -4.6693 -9.4660 19 6 5.0026 -5.2327 -10.7005 20 1 4.6893 -6.2488 -10.8902 21 6 5.6172 -4.4956 -11.7060 22 7 6.1022 -3.3042 -11.4435 23 14 5.7530 -5.2000 -13.4307 24 1 4.6179 -4.7131 -14.2551 25 1 7.0331 -4.7641 -14.0441 26 1 5.7159 -6.6831 -13.3640 27 6 4.1125 -5.2369 -8.4291 28 8 2.0117 -0.6801 -1.1665 29 1 -0.3634 0.5302 0.8803 30 1 -0.3633 0.4972 -0.8994 31 1 -0.3634 -1.0275 0.0190 32 1 3.1337 1.4382 0.0191 33 1 1.6976 1.9503 -0.8993 34 1 1.6665 1.9614 0.8803 35 1 1.3457 -2.6253 0.7159 36 1 3.0242 -2.5187 1.3434 37 1 1.4472 -3.1720 -1.7053 38 1 2.9546 -3.9169 -1.1213 39 1 3.6119 -2.0132 -3.1012 40 1 3.0647 -5.3654 -5.9436 41 1 5.0534 -2.3446 -7.2144 42 1 6.5307 -2.7895 -12.1453 43 1 3.6402 -6.2081 -8.4306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319909783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:29 Heat of formation + Delta-G solvation = -69.308379 kcal Electronic energy + Delta-G solvation = -28391.247839 eV Core-core repulsion = 24053.218184 eV Total energy + Delta-G solvation = -4338.029655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.16933 -40.43804 -39.48090 -37.96134 -36.01159 -35.09786 -34.29718 -33.29071 -33.02084 -30.34954 -30.12829 -28.10710 -27.84761 -26.57721 -25.13731 -23.61147 -22.30640 -21.58926 -21.04264 -20.31214 -19.48124 -18.31606 -18.02045 -17.46105 -16.79470 -16.47936 -15.83732 -15.77785 -15.51913 -15.34549 -15.09009 -14.76782 -14.35519 -14.08655 -14.00936 -13.75230 -13.53100 -13.24040 -13.07189 -12.99480 -12.94409 -12.63983 -12.57003 -12.45804 -12.11118 -11.80294 -11.75497 -11.58095 -11.32327 -11.23387 -10.87818 -10.65120 -10.55245 -10.29400 -10.09616 -9.39876 -9.23901 -9.16000 -8.88091 -8.13415 -6.78816 -6.61589 -4.28482 1.62235 2.48680 2.83938 2.92751 3.03502 3.08723 3.30982 3.45828 3.70283 3.71617 3.86947 4.10827 4.20915 4.32320 4.36287 4.50021 4.53940 4.60233 4.81723 4.92515 4.96571 4.98891 5.01645 5.16651 5.20968 5.31345 5.32269 5.43566 5.53135 5.69231 5.78086 6.06157 6.19346 6.35478 6.66345 6.74168 6.88638 6.89846 7.15119 7.16470 7.73220 7.82974 8.07877 8.17689 8.47443 8.68560 9.30768 9.59133 10.34491 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.030355 B = 0.001839 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.189161 B =15221.691209 C =15769.912010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.249 3.751 3 C -0.155 4.155 4 O -0.370 6.370 5 C 0.026 3.974 6 C 0.038 3.962 7 H 0.098 0.902 8 C 0.123 3.877 9 N -0.701 5.701 10 C 0.517 3.483 11 O -0.529 6.529 12 C 0.484 3.516 13 O -0.521 6.521 14 N -0.583 5.583 15 C -0.070 4.070 16 C -0.026 4.026 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.322 4.322 20 H 0.118 0.882 21 C 0.046 3.954 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.263 1.263 27 C -0.076 4.076 28 O -0.367 6.367 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.417 0.583 40 H 0.409 0.591 41 H 0.178 0.822 42 H 0.276 0.724 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.258 3.139 22.027 23.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.172 3.828 3 C -0.212 4.212 4 O -0.291 6.291 5 C -0.051 4.051 6 C -0.020 4.020 7 H 0.116 0.884 8 C -0.001 4.001 9 N -0.355 5.355 10 C 0.298 3.702 11 O -0.405 6.405 12 C 0.265 3.735 13 O -0.399 6.399 14 N -0.225 5.225 15 C -0.176 4.176 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.095 4.905 19 C -0.455 4.455 20 H 0.136 0.864 21 C -0.171 4.171 22 N -0.393 5.393 23 Si 0.760 3.240 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.228 4.228 28 O -0.289 6.289 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.132 0.868 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.254 0.746 40 H 0.244 0.756 41 H 0.195 0.805 42 H 0.086 0.914 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.522 3.983 20.927 22.592 hybrid contribution -0.501 -0.875 0.041 1.009 sum -8.023 3.108 20.968 22.665 Atomic orbital electron populations 1.22377 0.93625 1.03401 1.03487 1.23443 0.93107 0.91579 0.74656 1.22078 1.02595 0.93167 1.03361 1.89277 1.86017 1.21643 1.32143 1.24300 1.01923 0.85324 0.93548 1.24044 0.97546 0.86810 0.93637 0.88427 1.21501 1.00061 0.95999 0.82529 1.45571 1.56032 1.21482 1.12424 1.20301 0.80514 0.83490 0.85852 1.90734 1.41589 1.27199 1.81004 1.19581 0.83824 0.84989 0.85142 1.90665 1.42168 1.27173 1.79859 1.42133 1.50711 1.18989 1.10711 1.17254 1.14337 0.99682 0.86288 1.24151 1.02341 0.99143 0.94550 1.78259 1.22339 0.97999 1.10584 1.44567 1.27985 1.10042 1.07936 1.19929 1.41308 0.99626 0.84604 0.86415 1.25672 0.95183 0.95448 1.00827 1.70215 1.26417 1.09099 1.33586 0.85784 0.78429 0.79547 0.80253 1.19584 1.20063 1.18713 1.21307 1.10777 1.00662 0.90038 1.89000 1.69222 1.41328 1.29328 0.90604 0.90470 0.91786 0.91309 0.90201 0.90715 0.90076 0.86764 0.89941 0.89194 0.74558 0.75586 0.80548 0.91355 0.83327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.20 37.15 0.34 -0.88 16 2 C 0.25 2.09 1.47 -26.74 -0.04 2.05 16 3 C -0.15 -1.12 9.24 37.16 0.34 -0.78 16 4 O -0.37 -3.16 11.01 -59.04 -0.65 -3.81 16 5 C 0.03 0.16 7.36 38.17 0.28 0.44 16 6 C 0.04 0.28 3.72 -25.72 -0.10 0.19 16 7 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 8 C 0.12 1.07 5.41 -4.05 -0.02 1.05 16 9 N -0.70 -8.23 5.55 -60.78 -0.34 -8.57 16 10 C 0.52 7.72 7.88 -11.65 -0.09 7.63 16 11 O -0.53 -8.51 16.47 5.48 0.09 -8.42 16 12 C 0.48 8.74 7.85 -11.66 -0.09 8.65 16 13 O -0.52 -10.57 13.62 5.45 0.07 -10.50 16 14 N -0.58 -10.97 5.45 -10.46 -0.06 -11.03 16 15 C -0.07 -1.61 6.90 -83.92 -0.58 -2.19 16 16 C -0.03 -0.68 10.85 -17.02 -0.18 -0.86 16 17 N -0.26 -7.49 10.41 30.81 0.32 -7.17 16 18 N -0.14 -3.77 3.73 -11.40 -0.04 -3.81 16 19 C -0.32 -8.42 10.24 -14.82 -0.15 -8.58 16 20 H 0.12 2.74 7.84 -52.48 -0.41 2.33 16 21 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 22 N -0.77 -21.14 11.84 55.50 0.66 -20.49 16 23 Si 0.94 18.69 29.56 -169.99 -5.02 13.67 16 24 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 25 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 26 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 27 C -0.08 -1.79 11.50 -16.38 -0.19 -1.98 16 28 O -0.37 -3.57 10.57 -59.04 -0.62 -4.20 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.42 8.04 -51.93 -0.42 0.00 16 36 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.42 4.81 7.94 -40.82 -0.32 4.48 16 40 H 0.41 6.61 8.29 -40.82 -0.34 6.27 16 41 H 0.18 4.45 5.92 -52.49 -0.31 4.14 16 42 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 43 H 0.15 2.92 8.06 -52.49 -0.42 2.49 16 LS Contribution 372.45 15.07 5.61 5.61 Total: -1.00 -33.75 372.45 -6.14 -39.89 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -5.59 Total: 12.99 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -0.57 Total: 5.83 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.54 Total: -51.06 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -1.11 Total: -26.93 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.75 -6.14 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319909783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.420 kcal (2) G-P(sol) polarization free energy of solvation -33.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds