Wall clock time and date at job start Tue Mar 31 2020 22:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.62881 * 2 1 4 4 O 1.43757 * 109.63123 * 120.39252 * 2 1 3 5 5 C 1.44781 * 104.81570 * 95.56782 * 4 2 1 6 6 C 1.54918 * 101.72335 * 36.10526 * 5 4 2 7 7 H 1.08992 * 110.69460 * 83.00745 * 6 5 4 8 8 C 1.52998 * 110.69563 * 206.04228 * 6 5 4 9 9 N 1.46495 * 109.47333 * 184.99462 * 8 6 5 10 10 C 1.34774 * 120.00429 * 179.97438 * 9 8 6 11 11 O 1.21367 * 119.99666 * 0.02562 * 10 9 8 12 12 C 1.49308 * 120.00245 * 180.02562 * 10 9 8 13 13 O 1.21407 * 119.99593 * 359.97438 * 12 10 9 14 14 N 1.34770 * 119.99886 * 179.72492 * 12 10 9 15 15 C 1.40294 * 120.00114 * 180.26994 * 14 12 10 16 16 C 1.40723 * 126.09769 * 0.02562 * 15 14 12 17 17 N 1.30882 * 108.37509 * 179.97438 * 16 15 14 18 18 N 1.40061 * 108.43650 * 0.02562 * 17 16 15 19 19 C 1.37294 * 126.05236 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99292 * 174.11292 * 19 18 17 21 21 C 1.39002 * 120.00311 * 354.10865 * 19 18 17 22 22 N 1.31284 * 119.99672 * 5.92153 * 21 19 18 23 23 Si 1.86795 * 120.00302 * 185.92050 * 21 19 18 24 24 H 1.48496 * 109.47401 * 94.97948 * 23 21 19 25 25 H 1.48494 * 109.47254 * 214.98298 * 23 21 19 26 26 H 1.48506 * 109.47035 * 334.97673 * 23 21 19 27 27 C 1.35789 * 126.10507 * 179.71343 * 15 14 12 28 28 O 1.43364 * 109.63672 * 239.75648 * 2 1 3 29 29 H 1.09002 * 109.47237 * 301.06237 * 1 2 3 30 30 H 1.09002 * 109.46891 * 61.06467 * 1 2 3 31 31 H 1.09003 * 109.47257 * 181.06174 * 1 2 3 32 32 H 1.09000 * 109.47618 * 178.93425 * 3 2 1 33 33 H 1.08998 * 109.47258 * 298.93767 * 3 2 1 34 34 H 1.09003 * 109.47288 * 58.93763 * 3 2 1 35 35 H 1.09003 * 110.97780 * 277.99254 * 5 4 2 36 36 H 1.09007 * 111.01122 * 154.23038 * 5 4 2 37 37 H 1.09009 * 109.47235 * 64.99683 * 8 6 5 38 38 H 1.08995 * 109.47313 * 305.00058 * 8 6 5 39 39 H 0.97004 * 119.99737 * 0.02562 * 9 8 6 40 40 H 0.97004 * 120.00137 * 0.27313 * 14 12 10 41 41 H 1.07996 * 125.81211 * 359.96808 * 16 15 14 42 42 H 0.97004 * 120.00006 * 180.02562 * 22 21 19 43 43 H 1.08001 * 126.24414 * 0.03489 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 8 2.0129 -0.6850 1.1679 5 6 2.2652 -2.0400 0.7246 6 6 2.7885 -1.8079 -0.7149 7 1 3.8515 -1.5672 -0.7042 8 6 2.5224 -3.0335 -1.5912 9 7 3.1314 -2.8336 -2.9085 10 6 3.0252 -3.7898 -3.8523 11 8 2.4244 -4.8164 -3.6110 12 6 3.6464 -3.5862 -5.1946 13 8 4.2469 -2.5591 -5.4360 14 7 3.5448 -4.5448 -6.1365 15 6 4.1334 -4.3560 -7.3959 16 6 4.8561 -3.2224 -7.8117 17 7 5.2483 -3.4129 -9.0458 18 7 4.7937 -4.6693 -9.4660 19 6 5.0026 -5.2327 -10.7005 20 1 4.6893 -6.2488 -10.8902 21 6 5.6172 -4.4956 -11.7060 22 7 6.1022 -3.3042 -11.4435 23 14 5.7530 -5.2000 -13.4307 24 1 4.6179 -4.7131 -14.2551 25 1 7.0331 -4.7641 -14.0441 26 1 5.7159 -6.6831 -13.3640 27 6 4.1125 -5.2369 -8.4291 28 8 2.0117 -0.6801 -1.1665 29 1 -0.3634 0.5302 0.8803 30 1 -0.3633 0.4972 -0.8994 31 1 -0.3634 -1.0275 0.0190 32 1 3.1337 1.4382 0.0191 33 1 1.6976 1.9503 -0.8993 34 1 1.6665 1.9614 0.8803 35 1 1.3457 -2.6253 0.7159 36 1 3.0242 -2.5187 1.3434 37 1 1.4472 -3.1720 -1.7053 38 1 2.9546 -3.9169 -1.1213 39 1 3.6119 -2.0132 -3.1012 40 1 3.0647 -5.3654 -5.9436 41 1 5.0534 -2.3446 -7.2144 42 1 6.5307 -2.7895 -12.1453 43 1 3.6402 -6.2081 -8.4306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319909783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:28 Heat of formation + Delta-G solvation = -95.546730 kcal Electronic energy + Delta-G solvation = -28392.385619 eV Core-core repulsion = 24053.218184 eV Total energy + Delta-G solvation = -4339.167435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.07514 -41.70966 -41.09188 -39.42812 -36.91946 -36.11700 -35.64518 -34.97021 -33.83881 -32.30017 -30.88831 -29.88040 -28.41348 -27.62918 -26.74051 -24.88822 -23.07007 -22.85673 -22.20633 -21.71106 -21.22256 -19.74574 -19.17262 -18.62327 -17.71212 -17.47870 -17.38720 -16.99974 -16.81441 -16.62476 -16.15885 -15.78140 -15.71030 -15.32657 -15.18534 -14.87679 -14.78471 -14.67427 -14.36661 -13.76430 -13.65415 -13.52405 -13.38543 -13.31212 -13.14277 -13.05973 -13.01140 -12.87129 -12.67490 -12.56884 -12.29878 -12.06569 -11.97268 -11.21275 -11.07885 -10.87012 -10.70215 -10.60349 -10.38828 -10.14261 -8.62563 -8.49570 -6.26870 0.26951 1.26076 1.29251 1.41934 1.59214 1.72207 2.03120 2.11369 2.26128 2.52961 2.56064 2.88025 2.93122 3.06647 3.41256 3.51329 3.64864 3.80902 3.92650 3.97181 4.30964 4.34016 4.39714 4.50549 4.52758 4.59693 4.66219 4.74963 4.77186 4.84974 4.95521 4.96213 4.98463 5.07500 5.15259 5.21598 5.22554 5.30380 5.88958 5.96423 6.08112 6.23618 6.45811 6.66550 6.76342 7.06687 7.41455 7.62549 8.49962 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.030355 B = 0.001839 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.189161 B =15221.691209 C =15769.912010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.241 3.759 3 C -0.155 4.155 4 O -0.383 6.383 5 C 0.027 3.973 6 C 0.038 3.962 7 H 0.105 0.895 8 C 0.122 3.878 9 N -0.687 5.687 10 C 0.527 3.473 11 O -0.538 6.538 12 C 0.485 3.515 13 O -0.544 6.544 14 N -0.581 5.581 15 C -0.057 4.057 16 C -0.049 4.049 17 N -0.309 5.309 18 N -0.164 5.164 19 C -0.353 4.353 20 H 0.142 0.858 21 C -0.005 4.005 22 N -0.821 5.821 23 Si 1.020 2.980 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.243 1.243 27 C -0.073 4.073 28 O -0.390 6.390 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.419 0.581 40 H 0.424 0.576 41 H 0.175 0.825 42 H 0.278 0.722 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.287 1.530 23.226 25.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.164 3.836 3 C -0.212 4.212 4 O -0.304 6.304 5 C -0.050 4.050 6 C -0.020 4.020 7 H 0.122 0.878 8 C 0.000 4.000 9 N -0.340 5.340 10 C 0.308 3.692 11 O -0.415 6.415 12 C 0.267 3.733 13 O -0.422 6.422 14 N -0.226 5.226 15 C -0.163 4.163 16 C -0.224 4.224 17 N -0.140 5.140 18 N 0.068 4.932 19 C -0.484 4.484 20 H 0.159 0.841 21 C -0.218 4.218 22 N -0.448 5.448 23 Si 0.839 3.161 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.166 1.166 27 C -0.224 4.224 28 O -0.312 6.312 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.157 0.843 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.256 0.744 40 H 0.262 0.738 41 H 0.192 0.808 42 H 0.088 0.912 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -8.576 2.366 22.194 23.911 hybrid contribution -0.235 -0.328 -0.107 0.418 sum -8.811 2.037 22.087 23.867 Atomic orbital electron populations 1.22371 0.92889 1.03544 1.03911 1.23615 0.93739 0.91821 0.74376 1.22093 1.02235 0.92962 1.03922 1.89262 1.86120 1.22776 1.32266 1.24485 1.03178 0.84612 0.92722 1.24112 0.97808 0.85833 0.94218 0.87761 1.21742 0.99866 0.97480 0.80950 1.45618 1.54937 1.20492 1.12911 1.19575 0.80665 0.84098 0.84908 1.90741 1.42279 1.27672 1.80855 1.20277 0.82745 0.84107 0.86187 1.90657 1.42867 1.28100 1.80583 1.42069 1.51015 1.20088 1.09460 1.17295 1.12907 0.98324 0.87793 1.24248 1.03548 1.00244 0.94355 1.78155 1.24120 0.99823 1.11949 1.44848 1.29199 1.10003 1.09117 1.20658 1.42065 1.00941 0.84767 0.84060 1.26896 0.93994 0.95478 1.05394 1.70383 1.28122 1.11109 1.35235 0.84563 0.78146 0.79650 0.73777 1.19199 1.20081 1.16565 1.22014 1.09514 1.01865 0.89009 1.88981 1.69642 1.42123 1.30417 0.89537 0.90672 0.91800 0.91883 0.90202 0.89592 0.88995 0.84342 0.90054 0.87118 0.74375 0.73830 0.80815 0.91239 0.79394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 9.20 71.98 0.66 -1.54 16 2 C 0.24 3.74 1.47 30.59 0.04 3.79 16 3 C -0.15 -2.12 9.24 71.98 0.66 -1.46 16 4 O -0.38 -5.85 11.01 -126.22 -1.39 -7.24 16 5 C 0.03 0.26 7.36 72.64 0.53 0.79 16 6 C 0.04 0.50 3.72 31.25 0.12 0.61 16 7 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 8 C 0.12 1.84 5.41 86.38 0.47 2.31 16 9 N -0.69 -14.94 5.55 -464.56 -2.58 -17.52 16 10 C 0.53 14.88 7.88 87.23 0.69 15.57 16 11 O -0.54 -16.11 16.47 -3.30 -0.05 -16.17 16 12 C 0.49 17.16 7.85 87.23 0.69 17.84 16 13 O -0.54 -22.14 13.62 -3.42 -0.05 -22.19 16 14 N -0.58 -21.29 5.45 -305.33 -1.66 -22.95 16 15 C -0.06 -2.62 6.90 37.83 0.26 -2.36 16 16 C -0.05 -2.59 10.85 85.44 0.93 -1.66 16 17 N -0.31 -18.36 10.41 -56.43 -0.59 -18.95 16 18 N -0.16 -9.01 3.73 -189.98 -0.71 -9.71 16 19 C -0.35 -18.50 10.24 84.02 0.86 -17.64 16 20 H 0.14 6.41 7.84 -2.91 -0.02 6.39 16 21 C -0.01 -0.28 5.50 84.96 0.47 0.19 16 22 N -0.82 -46.77 11.84 21.66 0.26 -46.52 16 23 Si 1.02 38.12 29.56 68.60 2.03 40.15 16 24 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 25 H -0.28 -10.18 7.11 99.48 0.71 -9.47 16 26 H -0.24 -8.18 7.11 99.48 0.71 -7.47 16 27 C -0.07 -3.38 11.50 83.41 0.96 -2.42 16 28 O -0.39 -7.11 10.57 -126.22 -1.33 -8.45 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 0.70 8.04 -2.39 -0.02 0.68 16 36 H 0.14 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.42 9.14 7.94 -92.71 -0.74 8.40 16 40 H 0.42 12.91 8.29 -92.71 -0.77 12.14 16 41 H 0.18 9.14 5.92 -2.91 -0.02 9.12 16 42 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 43 H 0.19 6.91 8.06 -2.91 -0.02 6.89 16 Total: -1.00 -75.05 372.45 0.83 -74.22 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: -0.43 Total: 41.29 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 7.34 Total: 14.03 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -5.28 Total: -115.65 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -2.82 Total: -54.04 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -75.05 0.83 -74.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319909783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.328 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds