Wall clock time and date at job start Tue Mar 31 2020 21:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39688 * 125.77493 * 2 1 4 4 C 1.36211 * 107.86457 * 180.02562 * 3 2 1 5 5 N 1.39200 * 126.27311 * 179.97438 * 4 3 2 6 6 C 1.34770 * 120.00322 * 0.03015 * 5 4 3 7 7 O 1.21399 * 120.00046 * 359.97438 * 6 5 4 8 8 C 1.49305 * 120.00189 * 180.02562 * 6 5 4 9 9 O 1.21366 * 119.99898 * 359.97438 * 8 6 5 10 10 N 1.34778 * 119.99933 * 179.97438 * 8 6 5 11 11 C 1.47523 * 125.63816 * 0.04018 * 10 8 6 12 12 C 1.54909 * 104.78433 * 204.08585 * 11 10 8 13 13 H 1.09002 * 111.00594 * 81.08595 * 12 11 10 14 14 O 1.42900 * 111.00614 * 204.90170 * 12 11 10 15 15 C 1.55158 * 101.61642 * 322.99277 * 12 11 10 16 16 H 1.08996 * 110.72495 * 153.88672 * 15 12 11 17 17 O 1.42902 * 110.71805 * 276.98192 * 15 12 11 18 18 C 1.47022 * 125.64623 * 179.97438 * 10 8 6 19 19 N 1.35851 * 107.45406 * 0.23062 * 4 3 2 20 20 C 1.46496 * 126.10135 * 179.76642 * 19 4 3 21 21 C 1.50704 * 109.47071 * 89.99873 * 20 19 4 22 22 H 1.08002 * 119.99652 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00114 * 180.02562 * 21 20 19 24 24 N 1.31509 * 120.00013 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99837 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47014 * 90.00059 * 25 23 21 27 27 H 1.48503 * 109.46666 * 210.00091 * 25 23 21 28 28 H 1.48493 * 109.47048 * 329.99773 * 25 23 21 29 29 N 1.30848 * 125.76888 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46918 * 89.99974 * 1 2 3 31 31 H 1.09002 * 109.47055 * 209.99495 * 1 2 3 32 32 H 1.08998 * 109.46555 * 329.99668 * 1 2 3 33 33 H 1.08004 * 126.07088 * 0.02562 * 3 2 1 34 34 H 0.97008 * 119.99706 * 180.02562 * 5 4 3 35 35 H 1.09001 * 110.37251 * 85.27190 * 11 10 8 36 36 H 1.09004 * 110.41044 * 322.91472 * 11 10 8 37 37 H 0.96704 * 113.99874 * 295.41307 * 14 12 11 38 38 H 0.96701 * 113.99651 * 179.97438 * 17 15 12 39 39 H 1.08998 * 109.88478 * 59.56266 * 18 10 8 40 40 H 1.08997 * 109.88284 * 298.39497 * 18 10 8 41 41 H 1.09000 * 109.47527 * 209.99947 * 20 19 4 42 42 H 1.09000 * 109.47437 * 330.00437 * 20 19 4 43 43 H 0.97001 * 120.00046 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3236 1.1333 0.0000 4 6 3.6197 0.7144 -0.0006 5 7 4.7485 1.5290 -0.0013 6 6 4.6120 2.8698 -0.0008 7 8 3.5046 3.3672 -0.0003 8 6 5.8227 3.7435 -0.0021 9 8 6.9299 3.2462 -0.0032 10 7 5.6861 5.0843 -0.0022 11 6 4.4063 5.8180 -0.0002 12 6 4.7423 7.2007 -0.6123 13 1 4.7720 7.1494 -1.7007 14 8 3.8133 8.1943 -0.1743 15 6 6.1556 7.4654 -0.0293 16 1 6.7228 8.1310 -0.6799 17 8 6.0650 8.0072 1.2899 18 6 6.7879 6.0578 -0.0029 19 7 3.6089 -0.6440 -0.0061 20 6 4.7856 -1.5166 -0.0135 21 6 5.1937 -1.8216 1.4048 22 1 4.6323 -1.4073 2.2292 23 6 6.2837 -2.6296 1.6500 24 7 6.9676 -3.1337 0.6461 25 14 6.7890 -3.0082 3.4081 26 1 6.0896 -4.2336 3.8711 27 1 8.2571 -3.2246 3.4654 28 1 6.4222 -1.8675 4.2851 29 7 2.2718 -1.0617 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 1.9871 2.1596 0.0004 34 1 5.6334 1.1316 -0.0020 35 1 4.0369 5.9338 1.0188 36 1 3.6701 5.2998 -0.6149 37 1 2.9062 8.0437 -0.4736 38 1 6.9216 8.1903 1.6996 39 1 7.4091 5.9140 -0.8870 40 1 7.3890 5.9380 0.8985 41 1 4.5458 -2.4458 -0.5304 42 1 5.6060 -1.0160 -0.5278 43 1 7.7342 -3.7024 0.8186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320600780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:50 Heat of formation + Delta-G solvation = -65.354549 kcal Electronic energy + Delta-G solvation = -29532.666224 eV Core-core repulsion = 25194.808020 eV Total energy + Delta-G solvation = -4337.858204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.32572 -40.50584 -39.26659 -38.20004 -36.32337 -35.81286 -34.75646 -33.80486 -32.10280 -30.52761 -29.29855 -28.85118 -28.48643 -26.09789 -25.57027 -23.35964 -22.73097 -21.51034 -20.76131 -19.87314 -19.26257 -18.49258 -17.68240 -17.38462 -16.85204 -16.67741 -16.46596 -16.23765 -15.53066 -15.19009 -14.89073 -14.73437 -14.62361 -14.31438 -14.07093 -13.96912 -13.41981 -13.21910 -13.02418 -12.88231 -12.80326 -12.57821 -12.14637 -12.08852 -11.89132 -11.65424 -11.48981 -11.10433 -11.08444 -10.88884 -10.82045 -10.57545 -10.46020 -10.33268 -9.86881 -9.82556 -9.47752 -9.11119 -8.70601 -8.00451 -7.59983 -6.32203 -4.40916 1.16500 1.89562 2.56615 2.98698 3.16984 3.19428 3.25620 3.30106 3.51105 3.55085 3.59474 3.77546 3.99328 4.13344 4.24709 4.28238 4.65253 4.76360 4.93863 5.01310 5.16922 5.25663 5.27098 5.40234 5.51566 5.63808 5.69639 5.96400 6.03510 6.05243 6.12547 6.26866 6.49105 6.79350 6.83549 6.98810 7.12674 7.25605 7.28508 7.41751 7.46826 7.60907 7.75339 7.79335 8.04224 8.53619 8.67478 9.26870 10.75226 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011354 B = 0.003271 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.470554 B = 8558.390149 C =10387.315859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.287 4.287 4 C 0.293 3.707 5 N -0.606 5.606 6 C 0.516 3.484 7 O -0.494 6.494 8 C 0.530 3.470 9 O -0.506 6.506 10 N -0.587 5.587 11 C 0.068 3.932 12 C 0.096 3.904 13 H 0.088 0.912 14 O -0.539 6.539 15 C 0.100 3.900 16 H 0.087 0.913 17 O -0.540 6.540 18 C 0.076 3.924 19 N -0.340 5.340 20 C 0.255 3.745 21 C -0.543 4.543 22 H 0.065 0.935 23 C 0.068 3.932 24 N -0.888 5.888 25 Si 0.907 3.093 26 H -0.276 1.276 27 H -0.282 1.282 28 H -0.272 1.272 29 N -0.277 5.277 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.163 0.837 34 H 0.429 0.571 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.382 0.618 38 H 0.379 0.621 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.280 21.674 -4.500 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.318 4.318 4 C 0.071 3.929 5 N -0.253 5.253 6 C 0.297 3.703 7 O -0.368 6.368 8 C 0.313 3.687 9 O -0.381 6.381 10 N -0.324 5.324 11 C -0.055 4.055 12 C 0.036 3.964 13 H 0.105 0.895 14 O -0.343 6.343 15 C 0.040 3.960 16 H 0.104 0.896 17 O -0.345 6.345 18 C -0.047 4.047 19 N -0.126 5.126 20 C 0.137 3.863 21 C -0.581 4.581 22 H 0.083 0.917 23 C -0.136 4.136 24 N -0.526 5.526 25 Si 0.734 3.266 26 H -0.202 1.202 27 H -0.208 1.208 28 H -0.197 1.197 29 N -0.102 5.102 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.180 0.820 34 H 0.267 0.733 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.230 0.770 38 H 0.227 0.773 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.185 20.404 -4.392 21.113 hybrid contribution 1.240 -0.027 0.820 1.487 sum -1.945 20.377 -3.572 20.779 Atomic orbital electron populations 1.20031 0.87406 1.02567 1.02118 1.22019 0.96612 0.90878 1.01987 1.21266 0.88861 1.00533 1.21173 1.17955 0.87450 0.83503 1.03966 1.42275 1.09618 1.04720 1.68731 1.19696 0.89461 0.82365 0.78763 1.90648 1.25998 1.73415 1.46754 1.19495 0.89178 0.81584 0.78489 1.90845 1.26333 1.73145 1.47730 1.47874 1.09024 1.03888 1.71568 1.23454 0.86287 0.91726 1.04014 1.23082 0.88747 0.87368 0.97211 0.89452 1.86626 1.21491 1.47855 1.78350 1.22846 0.95362 0.91915 0.85876 0.89550 1.86665 1.34457 1.84829 1.28516 1.22936 0.90249 0.87492 1.03989 1.49599 1.06602 1.01898 1.54500 1.19698 0.77717 0.89716 0.99134 1.21318 1.13517 1.32081 0.91233 0.91664 1.24933 0.95580 0.94861 0.98243 1.69909 1.19203 1.32499 1.30975 0.86335 0.77706 0.79031 0.83533 1.20189 1.20782 1.19669 1.77375 0.86080 1.21804 1.24981 0.91292 0.91403 0.91068 0.81998 0.73250 0.89365 0.87417 0.77000 0.77308 0.89539 0.89675 0.92322 0.93619 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.88 10.44 36.01 0.38 -0.50 16 2 C 0.05 0.96 7.20 -82.47 -0.59 0.37 16 3 C -0.29 -5.59 9.58 -39.77 -0.38 -5.97 16 4 C 0.29 6.15 7.68 -152.86 -1.17 4.98 16 5 N -0.61 -11.24 5.40 -11.80 -0.06 -11.30 16 6 C 0.52 8.40 7.82 -11.66 -0.09 8.30 16 7 O -0.49 -7.95 10.90 5.45 0.06 -7.89 16 8 C 0.53 7.82 7.91 -11.65 -0.09 7.73 16 9 O -0.51 -8.65 16.80 5.48 0.09 -8.56 16 10 N -0.59 -6.72 3.33 -171.00 -0.57 -7.29 16 11 C 0.07 0.67 5.79 -2.47 -0.01 0.65 16 12 C 0.10 0.72 4.30 -24.58 -0.11 0.62 16 13 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 14 O -0.54 -4.38 13.01 -52.57 -0.68 -5.07 16 15 C 0.10 0.71 4.21 -24.89 -0.10 0.60 16 16 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 17 O -0.54 -4.53 12.93 -52.57 -0.68 -5.21 16 18 C 0.08 0.64 6.64 -3.06 -0.02 0.62 16 19 N -0.34 -7.97 3.62 -61.47 -0.22 -8.20 16 20 C 0.25 6.47 6.02 -5.19 -0.03 6.44 16 21 C -0.54 -14.89 9.39 -34.44 -0.32 -15.22 16 22 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 23 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 24 N -0.89 -24.83 13.29 55.43 0.74 -24.10 16 25 Si 0.91 21.22 29.54 -169.99 -5.02 16.20 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 29 N -0.28 -6.33 12.56 33.64 0.42 -5.91 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.16 2.92 5.83 -52.48 -0.31 2.62 16 34 H 0.43 8.05 7.46 -40.82 -0.30 7.75 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.11 1.08 6.16 -51.93 -0.32 0.76 16 37 H 0.38 1.50 9.12 45.56 0.42 1.92 16 38 H 0.38 1.50 9.12 45.56 0.42 1.91 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 41 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.05 1.14 7.52 -51.93 -0.39 0.75 16 43 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -34.99 369.67 -6.85 -41.84 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -3.84 Total: 9.53 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -2.65 Total: 10.38 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.30 Total: -56.80 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -1.21 Total: -26.73 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.99 -6.85 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320600780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.513 kcal (2) G-P(sol) polarization free energy of solvation -34.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds