Wall clock time and date at job start Tue Mar 31 2020 21:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39688 * 125.77493 * 2 1 4 4 C 1.36211 * 107.86457 * 180.02562 * 3 2 1 5 5 N 1.39200 * 126.27311 * 179.97438 * 4 3 2 6 6 C 1.34770 * 120.00322 * 0.03015 * 5 4 3 7 7 O 1.21399 * 120.00046 * 359.97438 * 6 5 4 8 8 C 1.49305 * 120.00189 * 180.02562 * 6 5 4 9 9 O 1.21366 * 119.99898 * 359.97438 * 8 6 5 10 10 N 1.34778 * 119.99933 * 179.97438 * 8 6 5 11 11 C 1.47523 * 125.63816 * 0.04018 * 10 8 6 12 12 C 1.54909 * 104.78433 * 204.08585 * 11 10 8 13 13 H 1.09002 * 111.00594 * 81.08595 * 12 11 10 14 14 O 1.42900 * 111.00614 * 204.90170 * 12 11 10 15 15 C 1.55158 * 101.61642 * 322.99277 * 12 11 10 16 16 H 1.08996 * 110.72495 * 153.88672 * 15 12 11 17 17 O 1.42902 * 110.71805 * 276.98192 * 15 12 11 18 18 C 1.47022 * 125.64623 * 179.97438 * 10 8 6 19 19 N 1.35851 * 107.45406 * 0.23062 * 4 3 2 20 20 C 1.46496 * 126.10135 * 179.76642 * 19 4 3 21 21 C 1.50704 * 109.47071 * 89.99873 * 20 19 4 22 22 H 1.08002 * 119.99652 * 0.02562 * 21 20 19 23 23 C 1.37877 * 120.00114 * 180.02562 * 21 20 19 24 24 N 1.31509 * 120.00013 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99837 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47014 * 90.00059 * 25 23 21 27 27 H 1.48503 * 109.46666 * 210.00091 * 25 23 21 28 28 H 1.48493 * 109.47048 * 329.99773 * 25 23 21 29 29 N 1.30848 * 125.76888 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46918 * 89.99974 * 1 2 3 31 31 H 1.09002 * 109.47055 * 209.99495 * 1 2 3 32 32 H 1.08998 * 109.46555 * 329.99668 * 1 2 3 33 33 H 1.08004 * 126.07088 * 0.02562 * 3 2 1 34 34 H 0.97008 * 119.99706 * 180.02562 * 5 4 3 35 35 H 1.09001 * 110.37251 * 85.27190 * 11 10 8 36 36 H 1.09004 * 110.41044 * 322.91472 * 11 10 8 37 37 H 0.96704 * 113.99874 * 295.41307 * 14 12 11 38 38 H 0.96701 * 113.99651 * 179.97438 * 17 15 12 39 39 H 1.08998 * 109.88478 * 59.56266 * 18 10 8 40 40 H 1.08997 * 109.88284 * 298.39497 * 18 10 8 41 41 H 1.09000 * 109.47527 * 209.99947 * 20 19 4 42 42 H 1.09000 * 109.47437 * 330.00437 * 20 19 4 43 43 H 0.97001 * 120.00046 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3236 1.1333 0.0000 4 6 3.6197 0.7144 -0.0006 5 7 4.7485 1.5290 -0.0013 6 6 4.6120 2.8698 -0.0008 7 8 3.5046 3.3672 -0.0003 8 6 5.8227 3.7435 -0.0021 9 8 6.9299 3.2462 -0.0032 10 7 5.6861 5.0843 -0.0022 11 6 4.4063 5.8180 -0.0002 12 6 4.7423 7.2007 -0.6123 13 1 4.7720 7.1494 -1.7007 14 8 3.8133 8.1943 -0.1743 15 6 6.1556 7.4654 -0.0293 16 1 6.7228 8.1310 -0.6799 17 8 6.0650 8.0072 1.2899 18 6 6.7879 6.0578 -0.0029 19 7 3.6089 -0.6440 -0.0061 20 6 4.7856 -1.5166 -0.0135 21 6 5.1937 -1.8216 1.4048 22 1 4.6323 -1.4073 2.2292 23 6 6.2837 -2.6296 1.6500 24 7 6.9676 -3.1337 0.6461 25 14 6.7890 -3.0082 3.4081 26 1 6.0896 -4.2336 3.8711 27 1 8.2571 -3.2246 3.4654 28 1 6.4222 -1.8675 4.2851 29 7 2.2718 -1.0617 -0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 1.9871 2.1596 0.0004 34 1 5.6334 1.1316 -0.0020 35 1 4.0369 5.9338 1.0188 36 1 3.6701 5.2998 -0.6149 37 1 2.9062 8.0437 -0.4736 38 1 6.9216 8.1903 1.6996 39 1 7.4091 5.9140 -0.8870 40 1 7.3890 5.9380 0.8985 41 1 4.5458 -2.4458 -0.5304 42 1 5.6060 -1.0160 -0.5278 43 1 7.7342 -3.7024 0.8186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320600780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:49 Heat of formation + Delta-G solvation = -94.923304 kcal Electronic energy + Delta-G solvation = -29533.948422 eV Core-core repulsion = 25194.808020 eV Total energy + Delta-G solvation = -4339.140401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.70516 -41.76463 -40.30072 -39.33547 -36.90288 -36.82548 -36.11079 -35.62744 -33.87773 -31.37113 -30.85708 -30.09340 -29.52898 -27.84780 -26.72451 -24.85418 -24.11965 -22.38067 -21.82925 -21.38735 -20.56277 -19.12936 -19.02713 -18.80423 -18.33700 -18.01070 -17.59385 -17.40077 -16.79044 -16.49238 -16.24597 -15.89828 -15.65980 -15.57636 -15.18616 -15.05686 -14.67191 -14.47303 -14.23627 -14.14629 -14.03884 -13.66227 -13.59335 -13.43304 -13.14869 -12.97347 -12.81513 -12.73579 -12.68431 -12.33426 -12.09679 -11.75530 -11.70266 -11.54237 -11.36846 -11.06056 -10.79809 -10.68469 -10.05532 -9.70459 -9.20349 -8.40185 -6.57886 -0.12259 0.68214 1.04595 1.33946 1.34410 1.45343 1.67711 1.77822 2.05176 2.17998 2.31321 2.84560 2.90489 3.07768 3.21478 3.44079 3.52948 3.77578 4.09240 4.12211 4.17614 4.35541 4.43494 4.51967 4.63148 4.64829 4.69062 4.71423 4.80438 4.85104 4.92290 4.93610 4.95861 5.15535 5.19488 5.46527 5.72049 5.75431 5.89691 5.92340 6.00995 6.33773 6.52437 6.62024 6.77770 6.91872 6.93785 7.14079 8.66656 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011354 B = 0.003271 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.470554 B = 8558.390149 C =10387.315859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.060 3.940 3 C -0.288 4.288 4 C 0.288 3.712 5 N -0.614 5.614 6 C 0.518 3.482 7 O -0.491 6.491 8 C 0.531 3.469 9 O -0.537 6.537 10 N -0.577 5.577 11 C 0.066 3.934 12 C 0.102 3.898 13 H 0.114 0.886 14 O -0.555 6.555 15 C 0.105 3.895 16 H 0.120 0.880 17 O -0.564 6.564 18 C 0.070 3.930 19 N -0.367 5.367 20 C 0.272 3.728 21 C -0.559 4.559 22 H 0.049 0.951 23 C 0.025 3.975 24 N -0.914 5.914 25 Si 0.970 3.030 26 H -0.271 1.271 27 H -0.270 1.270 28 H -0.273 1.273 29 N -0.322 5.322 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.180 0.820 34 H 0.424 0.576 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.399 0.601 38 H 0.396 0.604 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.032 0.968 42 H 0.042 0.958 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.783 24.012 -4.316 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.320 4.320 4 C 0.066 3.934 5 N -0.262 5.262 6 C 0.300 3.700 7 O -0.364 6.364 8 C 0.313 3.687 9 O -0.414 6.414 10 N -0.312 5.312 11 C -0.057 4.057 12 C 0.041 3.959 13 H 0.131 0.869 14 O -0.362 6.362 15 C 0.045 3.955 16 H 0.137 0.863 17 O -0.372 6.372 18 C -0.052 4.052 19 N -0.153 5.153 20 C 0.153 3.847 21 C -0.597 4.597 22 H 0.067 0.933 23 C -0.176 4.176 24 N -0.551 5.551 25 Si 0.794 3.206 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.197 1.197 29 N -0.147 5.147 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.197 0.803 34 H 0.263 0.737 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.249 0.751 38 H 0.247 0.753 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.715 22.815 -4.214 23.496 hybrid contribution 1.291 -0.594 0.741 1.603 sum -2.424 22.221 -3.473 22.621 Atomic orbital electron populations 1.20260 0.83467 1.04103 1.04088 1.22931 0.98895 0.89806 0.98865 1.21548 0.88213 1.01300 1.20932 1.18364 0.88831 0.82912 1.03283 1.42423 1.08816 1.05396 1.69572 1.20092 0.90295 0.81713 0.77905 1.90624 1.26237 1.73229 1.46284 1.19139 0.87944 0.82539 0.79082 1.90833 1.26837 1.73862 1.49872 1.47995 1.10959 1.03110 1.69099 1.23545 0.85491 0.93278 1.03365 1.23166 0.88902 0.85420 0.98380 0.86863 1.86590 1.22866 1.47851 1.78873 1.22980 0.95323 0.91224 0.86005 0.86285 1.86619 1.36372 1.84802 1.29374 1.23258 0.89642 0.87538 1.04742 1.49358 1.06425 1.02597 1.56885 1.19216 0.78590 0.89031 0.97834 1.21426 1.13924 1.32691 0.91670 0.93302 1.25723 0.95321 0.94385 1.02208 1.69986 1.19553 1.32763 1.32838 0.85374 0.77917 0.78703 0.78632 1.19621 1.19418 1.19744 1.77333 0.86119 1.23783 1.27484 0.88962 0.90979 0.88388 0.80329 0.73747 0.90872 0.87714 0.75098 0.75314 0.87990 0.89735 0.95001 0.94010 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.56 10.44 71.24 0.74 -0.81 16 2 C 0.06 2.30 7.20 43.06 0.31 2.61 16 3 C -0.29 -11.08 9.58 22.15 0.21 -10.87 16 4 C 0.29 12.32 7.68 131.25 1.01 13.33 16 5 N -0.61 -23.45 5.40 -309.59 -1.67 -25.13 16 6 C 0.52 16.90 7.82 87.23 0.68 17.58 16 7 O -0.49 -15.42 10.90 -3.40 -0.04 -15.46 16 8 C 0.53 15.59 7.91 87.22 0.69 16.28 16 9 O -0.54 -18.54 16.80 -3.30 -0.06 -18.60 16 10 N -0.58 -12.52 3.33 -813.27 -2.71 -15.23 16 11 C 0.07 1.19 5.79 86.84 0.50 1.69 16 12 C 0.10 1.25 4.30 31.99 0.14 1.38 16 13 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 14 O -0.55 -7.62 13.01 -132.40 -1.72 -9.34 16 15 C 0.10 1.17 4.21 31.79 0.13 1.31 16 16 H 0.12 0.63 8.14 -2.39 -0.02 0.62 16 17 O -0.56 -8.19 12.93 -132.40 -1.71 -9.90 16 18 C 0.07 1.03 6.64 86.73 0.58 1.61 16 19 N -0.37 -17.85 3.62 -348.40 -1.26 -19.12 16 20 C 0.27 14.53 6.02 85.64 0.52 15.05 16 21 C -0.56 -31.74 9.39 25.60 0.24 -31.50 16 22 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 23 C 0.03 1.40 5.46 84.66 0.46 1.87 16 24 N -0.91 -52.00 13.29 21.45 0.28 -51.71 16 25 Si 0.97 43.84 29.54 68.60 2.03 45.86 16 26 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 27 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 28 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 29 N -0.32 -15.05 12.56 -47.49 -0.60 -15.65 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.18 6.17 5.83 -2.91 -0.02 6.15 16 34 H 0.42 16.79 7.46 -92.70 -0.69 16.09 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.10 1.95 6.16 -2.38 -0.01 1.94 16 37 H 0.40 2.20 9.12 -74.05 -0.68 1.53 16 38 H 0.40 2.28 9.12 -74.06 -0.68 1.60 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.08 1.30 8.07 -2.39 -0.02 1.28 16 41 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.04 2.22 7.52 -2.39 -0.02 2.20 16 43 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -76.99 369.67 -2.18 -79.17 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.94 Total: 25.58 kcal Atomic # 6 Polarization: 23.31 SS G_CDS: 6.21 Total: 29.52 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -5.95 Total: -126.83 kcal Atomic # 8 Polarization: -49.77 SS G_CDS: -3.53 Total: -53.30 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -76.99 -2.18 -79.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320600780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.755 kcal (2) G-P(sol) polarization free energy of solvation -76.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds