Wall clock time and date at job start Tue Mar 31 2020 21:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99724 * 2 1 4 4 O 1.20834 * 119.99939 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00197 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47254 * 179.97438 * 5 3 2 7 7 N 1.40063 * 125.99427 * 269.97036 * 6 5 3 8 8 C 1.30824 * 108.36358 * 179.77486 * 7 6 5 9 9 C 1.40330 * 108.21322 * 0.38499 * 8 7 6 10 10 N 1.40482 * 126.11645 * 179.87745 * 9 8 7 11 11 C 1.34775 * 119.99815 * 359.68700 * 10 9 8 12 12 O 1.21405 * 120.00024 * 0.02562 * 11 10 9 13 13 C 1.49329 * 119.99825 * 179.97438 * 11 10 9 14 14 O 1.21361 * 119.99999 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99825 * 180.02562 * 13 11 10 16 16 C 1.46502 * 120.00053 * 180.02562 * 15 13 11 17 17 H 1.08996 * 109.47077 * 34.99783 * 16 15 13 18 18 C 1.53008 * 109.47016 * 275.00255 * 16 15 13 19 19 C 1.50695 * 109.47337 * 155.00261 * 16 15 13 20 20 H 1.07998 * 120.00418 * 5.62270 * 19 16 15 21 21 C 1.37879 * 120.00201 * 185.62926 * 19 16 15 22 22 N 1.31514 * 120.00393 * 197.18198 * 21 19 16 23 23 Si 1.86804 * 119.99786 * 17.45333 * 21 19 16 24 24 H 1.48502 * 109.47029 * 179.72709 * 23 21 19 25 25 H 1.48503 * 109.46948 * 299.72609 * 23 21 19 26 26 H 1.48492 * 109.47033 * 59.72641 * 23 21 19 27 27 C 1.35221 * 125.99654 * 89.99440 * 6 5 3 28 28 C 1.50704 * 126.18129 * 359.96178 * 27 6 5 29 29 H 1.09003 * 109.46322 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47065 * 300.00198 * 1 2 3 31 31 H 1.09001 * 109.46788 * 60.00839 * 1 2 3 32 32 H 1.08998 * 109.47147 * 59.99703 * 5 3 2 33 33 H 1.09004 * 109.47015 * 299.99853 * 5 3 2 34 34 H 1.08003 * 125.88868 * 180.25884 * 8 7 6 35 35 H 0.96994 * 119.99994 * 179.68625 * 10 9 8 36 36 H 0.96996 * 120.00288 * 0.02562 * 15 13 11 37 37 H 1.09000 * 109.46665 * 306.33574 * 18 16 15 38 38 H 1.08994 * 109.46957 * 66.33318 * 18 16 15 39 39 H 1.09002 * 109.47065 * 186.34089 * 18 16 15 40 40 H 0.97001 * 119.99221 * 355.17115 * 22 21 19 41 41 H 1.08988 * 109.47026 * 269.99741 * 28 27 6 42 42 H 1.09005 * 109.46546 * 29.99618 * 28 27 6 43 43 H 1.08998 * 109.47272 * 149.99592 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9815 2.6799 -0.0011 7 7 4.2150 3.4689 -1.1346 8 6 4.5637 4.6660 -0.7388 9 6 4.5731 4.6787 0.6644 10 7 4.8968 5.7754 1.4805 11 6 5.2450 6.9515 0.9218 12 8 5.2783 7.0632 -0.2866 13 6 5.5886 8.1174 1.7893 14 8 5.5548 8.0058 2.9973 15 7 5.9362 9.2936 1.2306 16 6 6.2739 10.4373 2.0816 17 1 6.7842 10.0851 2.9780 18 6 4.9925 11.1726 2.4799 19 6 7.1776 11.3766 1.3254 20 1 7.3980 11.1928 0.2843 21 6 7.7233 12.4708 1.9627 22 7 8.2217 13.4621 1.2567 23 14 7.7613 12.5417 3.8290 24 1 8.4007 13.8098 4.2632 25 1 6.3739 12.4814 4.3550 26 1 8.5396 11.3904 4.3523 27 6 4.2071 3.4424 1.0927 28 6 4.0760 3.0006 2.5275 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 3.9557 0.7811 -0.8908 33 1 3.9564 0.7808 0.8892 34 1 4.8050 5.5000 -1.3812 35 1 4.8699 5.6862 2.4460 36 1 5.9629 9.3829 0.2652 37 1 4.4258 11.4262 1.5840 38 1 4.3896 10.5301 3.1215 39 1 5.2495 12.0852 3.0177 40 1 8.2694 13.3932 0.2904 41 1 3.0592 3.1860 2.8732 42 1 4.2964 1.9357 2.6013 43 1 4.7777 3.5606 3.1457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325045838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:40 Heat of formation + Delta-G solvation = -64.573763 kcal Electronic energy + Delta-G solvation = -28635.493093 eV Core-core repulsion = 24297.668746 eV Total energy + Delta-G solvation = -4337.824347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.91986 -40.85077 -40.10091 -38.19878 -37.06349 -35.56491 -34.80541 -33.81403 -32.48708 -31.79729 -29.88568 -29.03387 -27.29037 -27.10359 -25.05365 -24.38415 -22.54468 -21.73108 -20.40814 -20.28843 -19.65487 -18.46711 -18.41801 -17.60207 -17.30698 -17.09144 -16.84747 -16.19198 -15.76423 -15.64436 -15.11695 -14.97170 -14.41186 -14.08204 -13.98199 -13.97012 -13.53196 -13.35311 -13.19618 -13.11400 -12.85926 -12.74893 -12.63522 -12.50845 -12.24294 -11.83214 -11.50625 -11.36767 -11.31171 -11.22303 -11.00601 -10.88471 -10.53026 -10.08743 -9.83564 -9.58028 -9.24121 -9.14027 -8.42257 -8.35793 -7.89809 -6.62287 -4.25917 1.14868 1.57744 1.61515 1.86299 2.37314 2.69042 2.71408 3.35207 3.41514 3.56508 3.63136 3.98420 4.05090 4.13423 4.25110 4.38551 4.42001 4.58616 4.60355 4.67229 4.84549 5.00466 5.00977 5.09462 5.13691 5.26112 5.41356 5.55073 5.74548 5.94862 6.29307 6.45555 6.49457 6.56783 6.65142 6.81645 6.97771 7.13366 7.17618 7.23954 7.41033 7.52529 7.85572 8.19331 8.27400 8.49389 8.77060 9.43332 10.79089 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.030756 B = 0.002045 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.179990 B =13690.488580 C =13963.967404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.358 6.358 3 C 0.439 3.561 4 O -0.482 6.482 5 C 0.153 3.847 6 N -0.366 5.366 7 N -0.277 5.277 8 C 0.069 3.931 9 C 0.009 3.991 10 N -0.617 5.617 11 C 0.510 3.490 12 O -0.511 6.511 13 C 0.499 3.501 14 O -0.539 6.539 15 N -0.661 5.661 16 C 0.239 3.761 17 H 0.046 0.954 18 C -0.162 4.162 19 C -0.620 4.620 20 H 0.065 0.935 21 C 0.040 3.960 22 N -0.894 5.894 23 Si 1.042 2.958 24 H -0.282 1.282 25 H -0.271 1.271 26 H -0.279 1.279 27 C 0.059 3.941 28 C -0.093 4.093 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.212 0.788 35 H 0.421 0.579 36 H 0.407 0.593 37 H 0.047 0.953 38 H 0.031 0.969 39 H 0.066 0.934 40 H 0.270 0.730 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.932 -29.307 0.971 31.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.278 3.722 4 O -0.367 6.367 5 C 0.029 3.971 6 N -0.152 5.152 7 N -0.097 5.097 8 C -0.120 4.120 9 C -0.095 4.095 10 N -0.264 5.264 11 C 0.292 3.708 12 O -0.386 6.386 13 C 0.278 3.722 14 O -0.418 6.418 15 N -0.310 5.310 16 C 0.137 3.863 17 H 0.064 0.936 18 C -0.221 4.221 19 C -0.658 4.658 20 H 0.083 0.917 21 C -0.168 4.168 22 N -0.527 5.527 23 Si 0.870 3.130 24 H -0.208 1.208 25 H -0.197 1.197 26 H -0.205 1.205 27 C -0.068 4.068 28 C -0.151 4.151 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.228 0.772 35 H 0.258 0.742 36 H 0.243 0.757 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.973 -28.781 1.244 31.197 hybrid contribution -0.586 -0.458 -0.768 1.069 sum -12.559 -29.239 0.476 31.826 Atomic orbital electron populations 1.23330 0.75489 1.03996 1.02897 1.86469 1.24061 1.32686 1.84251 1.24089 0.92321 0.82086 0.73688 1.90780 1.66522 1.36228 1.43170 1.20846 0.88054 0.79787 1.08440 1.47430 1.54773 1.09169 1.03804 1.77450 1.22155 1.03091 1.06984 1.24595 0.98280 0.95693 0.93388 1.17384 1.13025 0.87865 0.91242 1.42471 1.65439 1.08147 1.10363 1.20675 0.77657 0.83902 0.88530 1.90621 1.50313 1.83166 1.14462 1.19670 0.80391 0.84278 0.87906 1.90713 1.53430 1.83786 1.13877 1.46230 1.62785 1.09920 1.12035 1.19229 0.93354 0.82173 0.91581 0.93616 1.22522 0.98749 1.00563 1.00246 1.22058 1.32811 1.11996 0.98954 0.91706 1.25707 0.93169 0.90967 1.06914 1.70870 1.44108 1.28812 1.08872 0.84079 0.77510 0.76636 0.74809 1.20794 1.19695 1.20534 1.20279 1.04736 0.90961 0.90830 1.20466 1.03936 1.02245 0.88470 0.87674 0.91675 0.91655 0.84188 0.84624 0.77228 0.74183 0.75742 0.93361 0.94980 0.91483 0.91947 0.89900 0.90755 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -2.40 10.57 -39.26 -0.41 -2.82 16 3 C 0.44 3.75 8.03 36.00 0.29 4.04 16 4 O -0.48 -6.19 16.18 -18.76 -0.30 -6.50 16 5 C 0.15 0.96 6.84 -5.20 -0.04 0.92 16 6 N -0.37 -3.94 3.11 -58.11 -0.18 -4.12 16 7 N -0.28 -3.84 12.56 30.72 0.39 -3.45 16 8 C 0.07 1.00 10.84 -17.19 -0.19 0.82 16 9 C 0.01 0.12 6.86 -83.96 -0.58 -0.45 16 10 N -0.62 -8.49 5.45 -10.48 -0.06 -8.54 16 11 C 0.51 8.48 7.86 -11.64 -0.09 8.39 16 12 O -0.51 -9.07 13.63 5.45 0.07 -9.00 16 13 C 0.50 9.54 7.85 -11.64 -0.09 9.45 16 14 O -0.54 -11.04 16.14 5.49 0.09 -10.95 16 15 N -0.66 -13.75 5.06 -55.40 -0.28 -14.03 16 16 C 0.24 5.66 2.14 -69.08 -0.15 5.52 16 17 H 0.05 1.14 6.23 -51.93 -0.32 0.81 16 18 C -0.16 -3.59 9.16 37.16 0.34 -3.25 16 19 C -0.62 -16.67 9.00 -34.44 -0.31 -16.98 16 20 H 0.06 1.84 7.96 -52.49 -0.42 1.42 16 21 C 0.04 1.10 5.29 -17.82 -0.09 1.00 16 22 N -0.89 -26.38 13.70 55.43 0.76 -25.62 16 23 Si 1.04 24.44 26.29 -169.99 -4.47 19.97 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -5.89 5.76 56.52 0.33 -5.56 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 C 0.06 0.64 6.96 -81.95 -0.57 0.07 16 28 C -0.09 -0.61 9.93 36.01 0.36 -0.25 16 29 H 0.10 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 32 H 0.14 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.14 0.32 7.06 -51.93 -0.37 -0.04 16 34 H 0.21 3.19 5.92 -52.48 -0.31 2.88 16 35 H 0.42 4.97 7.55 -40.82 -0.31 4.66 16 36 H 0.41 8.11 7.99 -40.82 -0.33 7.78 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 1.51 4.88 -51.93 -0.25 1.26 16 40 H 0.27 7.93 8.73 -40.82 -0.36 7.57 16 41 H 0.08 0.54 8.14 -51.94 -0.42 0.12 16 42 H 0.07 0.29 7.09 -51.93 -0.37 -0.08 16 43 H 0.09 0.51 7.61 -51.93 -0.40 0.12 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -35.41 371.96 -4.10 -39.51 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.26 Total: 9.43 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -0.05 Total: 10.51 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.63 Total: -55.76 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.56 Total: -29.26 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.47 Total: 19.97 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.41 -4.10 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325045838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.069 kcal (2) G-P(sol) polarization free energy of solvation -35.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds