Wall clock time and date at job start Tue Mar 31 2020 21:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34231 * 116.99724 * 2 1 4 4 O 1.20834 * 119.99939 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00197 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.47254 * 179.97438 * 5 3 2 7 7 N 1.40063 * 125.99427 * 269.97036 * 6 5 3 8 8 C 1.30824 * 108.36358 * 179.77486 * 7 6 5 9 9 C 1.40330 * 108.21322 * 0.38499 * 8 7 6 10 10 N 1.40482 * 126.11645 * 179.87745 * 9 8 7 11 11 C 1.34775 * 119.99815 * 359.68700 * 10 9 8 12 12 O 1.21405 * 120.00024 * 0.02562 * 11 10 9 13 13 C 1.49329 * 119.99825 * 179.97438 * 11 10 9 14 14 O 1.21361 * 119.99999 * 0.02562 * 13 11 10 15 15 N 1.34775 * 119.99825 * 180.02562 * 13 11 10 16 16 C 1.46502 * 120.00053 * 180.02562 * 15 13 11 17 17 H 1.08996 * 109.47077 * 34.99783 * 16 15 13 18 18 C 1.53008 * 109.47016 * 275.00255 * 16 15 13 19 19 C 1.50695 * 109.47337 * 155.00261 * 16 15 13 20 20 H 1.07998 * 120.00418 * 5.62270 * 19 16 15 21 21 C 1.37879 * 120.00201 * 185.62926 * 19 16 15 22 22 N 1.31514 * 120.00393 * 197.18198 * 21 19 16 23 23 Si 1.86804 * 119.99786 * 17.45333 * 21 19 16 24 24 H 1.48502 * 109.47029 * 179.72709 * 23 21 19 25 25 H 1.48503 * 109.46948 * 299.72609 * 23 21 19 26 26 H 1.48492 * 109.47033 * 59.72641 * 23 21 19 27 27 C 1.35221 * 125.99654 * 89.99440 * 6 5 3 28 28 C 1.50704 * 126.18129 * 359.96178 * 27 6 5 29 29 H 1.09003 * 109.46322 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47065 * 300.00198 * 1 2 3 31 31 H 1.09001 * 109.46788 * 60.00839 * 1 2 3 32 32 H 1.08998 * 109.47147 * 59.99703 * 5 3 2 33 33 H 1.09004 * 109.47015 * 299.99853 * 5 3 2 34 34 H 1.08003 * 125.88868 * 180.25884 * 8 7 6 35 35 H 0.96994 * 119.99994 * 179.68625 * 10 9 8 36 36 H 0.96996 * 120.00288 * 0.02562 * 15 13 11 37 37 H 1.09000 * 109.46665 * 306.33574 * 18 16 15 38 38 H 1.08994 * 109.46957 * 66.33318 * 18 16 15 39 39 H 1.09002 * 109.47065 * 186.34089 * 18 16 15 40 40 H 0.97001 * 119.99221 * 355.17115 * 22 21 19 41 41 H 1.08988 * 109.47026 * 269.99741 * 28 27 6 42 42 H 1.09005 * 109.46546 * 29.99618 * 28 27 6 43 43 H 1.08998 * 109.47272 * 149.99592 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9815 2.6799 -0.0011 7 7 4.2150 3.4689 -1.1346 8 6 4.5637 4.6660 -0.7388 9 6 4.5731 4.6787 0.6644 10 7 4.8968 5.7754 1.4805 11 6 5.2450 6.9515 0.9218 12 8 5.2783 7.0632 -0.2866 13 6 5.5886 8.1174 1.7893 14 8 5.5548 8.0058 2.9973 15 7 5.9362 9.2936 1.2306 16 6 6.2739 10.4373 2.0816 17 1 6.7842 10.0851 2.9780 18 6 4.9925 11.1726 2.4799 19 6 7.1776 11.3766 1.3254 20 1 7.3980 11.1928 0.2843 21 6 7.7233 12.4708 1.9627 22 7 8.2217 13.4621 1.2567 23 14 7.7613 12.5417 3.8290 24 1 8.4007 13.8098 4.2632 25 1 6.3739 12.4814 4.3550 26 1 8.5396 11.3904 4.3523 27 6 4.2071 3.4424 1.0927 28 6 4.0760 3.0006 2.5275 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 3.9557 0.7811 -0.8908 33 1 3.9564 0.7808 0.8892 34 1 4.8050 5.5000 -1.3812 35 1 4.8699 5.6862 2.4460 36 1 5.9629 9.3829 0.2652 37 1 4.4258 11.4262 1.5840 38 1 4.3896 10.5301 3.1215 39 1 5.2495 12.0852 3.0177 40 1 8.2694 13.3932 0.2904 41 1 3.0592 3.1860 2.8732 42 1 4.2964 1.9357 2.6013 43 1 4.7777 3.5606 3.1457 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325045838.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:39 Heat of formation + Delta-G solvation = -92.569130 kcal Electronic energy + Delta-G solvation = -28636.707063 eV Core-core repulsion = 24297.668746 eV Total energy + Delta-G solvation = -4339.038317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.84736 -41.71790 -41.29116 -39.64399 -37.72399 -37.15654 -36.13393 -34.63545 -34.46110 -32.57821 -31.68823 -29.69873 -28.17120 -27.67964 -26.93970 -25.83280 -23.47928 -22.87865 -21.79221 -21.27953 -21.15622 -20.00705 -19.04370 -18.95480 -18.53771 -17.83345 -17.64942 -17.44237 -17.05416 -16.67601 -16.54179 -16.00661 -15.62782 -15.26033 -15.07085 -15.00291 -14.67307 -14.64882 -14.49177 -14.22859 -13.98410 -13.75596 -13.59188 -13.47697 -13.37596 -13.12085 -13.02700 -12.65742 -12.40522 -12.26492 -11.95328 -11.93784 -11.90817 -11.77777 -11.64018 -11.16947 -10.71352 -10.47528 -10.46241 -10.14507 -8.89888 -8.82331 -6.46747 0.08958 0.55571 0.95254 0.99225 1.36667 1.49150 1.55132 1.58884 1.74100 1.83074 2.24042 2.44740 2.70478 3.01098 3.38726 3.45847 3.55227 3.61718 3.89393 4.04588 4.21797 4.25077 4.27352 4.28777 4.44292 4.64174 4.67771 4.69441 4.71733 4.82285 4.83079 4.99566 5.01638 5.19538 5.31773 5.44521 5.52600 5.55696 5.77153 5.94552 5.99468 6.37449 6.47035 6.51326 6.54122 6.75441 6.97010 7.30724 8.57896 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.030756 B = 0.002045 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.179990 B =13690.488580 C =13963.967404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.351 6.351 3 C 0.444 3.556 4 O -0.533 6.533 5 C 0.143 3.857 6 N -0.360 5.360 7 N -0.302 5.302 8 C 0.049 3.951 9 C -0.031 4.031 10 N -0.596 5.596 11 C 0.512 3.488 12 O -0.529 6.529 13 C 0.504 3.496 14 O -0.549 6.549 15 N -0.670 5.670 16 C 0.242 3.758 17 H 0.041 0.959 18 C -0.156 4.156 19 C -0.620 4.620 20 H 0.036 0.964 21 C -0.007 4.007 22 N -0.924 5.924 23 Si 1.076 2.924 24 H -0.284 1.284 25 H -0.241 1.241 26 H -0.267 1.267 27 C 0.087 3.913 28 C -0.097 4.097 29 H 0.138 0.862 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.164 0.836 33 H 0.186 0.814 34 H 0.194 0.806 35 H 0.430 0.570 36 H 0.409 0.591 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.257 0.743 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.947 -32.812 3.345 35.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.266 6.266 3 C 0.287 3.713 4 O -0.422 6.422 5 C 0.021 3.979 6 N -0.145 5.145 7 N -0.123 5.123 8 C -0.138 4.138 9 C -0.135 4.135 10 N -0.243 5.243 11 C 0.294 3.706 12 O -0.406 6.406 13 C 0.284 3.716 14 O -0.428 6.428 15 N -0.319 5.319 16 C 0.138 3.862 17 H 0.058 0.942 18 C -0.215 4.215 19 C -0.657 4.657 20 H 0.054 0.946 21 C -0.207 4.207 22 N -0.559 5.559 23 Si 0.897 3.103 24 H -0.209 1.209 25 H -0.165 1.165 26 H -0.192 1.192 27 C -0.042 4.042 28 C -0.155 4.155 29 H 0.156 0.844 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.181 0.819 33 H 0.203 0.797 34 H 0.210 0.790 35 H 0.270 0.730 36 H 0.245 0.755 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.129 0.871 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.017 -32.383 3.606 35.087 hybrid contribution -0.353 0.363 -1.573 1.653 sum -13.371 -32.020 2.032 34.759 Atomic orbital electron populations 1.23571 0.74491 1.05971 1.02306 1.86475 1.25019 1.31561 1.83570 1.24457 0.93039 0.81758 0.72086 1.90777 1.67732 1.37853 1.45829 1.21481 0.86715 0.77642 1.12026 1.47831 1.53212 1.10447 1.03005 1.77371 1.23044 1.03237 1.08636 1.24418 0.99361 0.95900 0.94166 1.17550 1.16244 0.88870 0.90826 1.42204 1.63943 1.07311 1.10841 1.20087 0.78574 0.84095 0.87854 1.90636 1.51626 1.83421 1.14871 1.19961 0.79336 0.84318 0.87978 1.90692 1.53645 1.84056 1.14443 1.46072 1.63787 1.10152 1.11892 1.19000 0.93520 0.82591 0.91069 0.94160 1.22413 0.97979 1.00452 1.00637 1.22215 1.33008 1.12614 0.97906 0.94602 1.27019 0.92407 0.90665 1.10638 1.70988 1.46456 1.30270 1.08152 0.83677 0.79411 0.76942 0.70284 1.20935 1.16482 1.19232 1.20946 1.00950 0.89689 0.92649 1.20736 1.04665 1.04781 0.85285 0.84406 0.91907 0.92710 0.81873 0.79667 0.78961 0.73013 0.75541 0.93201 0.93253 0.91791 0.93410 0.89248 0.87066 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.43 16 2 O -0.35 -3.73 10.57 -51.42 -0.54 -4.27 16 3 C 0.44 6.51 8.03 71.23 0.57 7.08 16 4 O -0.53 -13.13 16.18 21.94 0.35 -12.78 16 5 C 0.14 1.27 6.84 85.63 0.59 1.86 16 6 N -0.36 -6.93 3.11 -337.77 -1.05 -7.98 16 7 N -0.30 -8.26 12.56 -56.72 -0.71 -8.97 16 8 C 0.05 1.45 10.84 85.35 0.93 2.38 16 9 C -0.03 -0.82 6.86 37.71 0.26 -0.56 16 10 N -0.60 -15.83 5.45 -305.42 -1.67 -17.49 16 11 C 0.51 17.03 7.86 87.23 0.69 17.71 16 12 O -0.53 -19.34 13.63 -3.42 -0.05 -19.38 16 13 C 0.50 19.03 7.85 87.23 0.68 19.72 16 14 O -0.55 -21.70 16.14 -3.28 -0.05 -21.76 16 15 N -0.67 -27.99 5.06 -447.55 -2.27 -30.25 16 16 C 0.24 11.35 2.14 44.25 0.09 11.44 16 17 H 0.04 1.96 6.23 -2.39 -0.01 1.94 16 18 C -0.16 -6.69 9.16 71.98 0.66 -6.03 16 19 C -0.62 -33.91 9.00 25.60 0.23 -33.68 16 20 H 0.04 2.12 7.96 -2.91 -0.02 2.10 16 21 C -0.01 -0.37 5.29 84.66 0.45 0.08 16 22 N -0.92 -55.87 13.70 21.45 0.29 -55.58 16 23 Si 1.08 48.41 26.29 68.60 1.80 50.22 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.24 -9.62 5.76 99.48 0.57 -9.05 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 C 0.09 1.65 6.96 41.49 0.29 1.94 16 28 C -0.10 -0.86 9.93 71.24 0.71 -0.15 16 29 H 0.14 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 31 H 0.05 0.56 8.13 -2.39 -0.02 0.54 16 32 H 0.16 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.19 -0.20 7.06 -2.38 -0.02 -0.22 16 34 H 0.19 6.27 5.92 -2.91 -0.02 6.25 16 35 H 0.43 9.39 7.55 -92.71 -0.70 8.69 16 36 H 0.41 16.76 7.99 -92.71 -0.74 16.01 16 37 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 2.75 4.88 -2.39 -0.01 2.74 16 40 H 0.26 15.70 8.73 -92.71 -0.81 14.89 16 41 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 42 H 0.11 0.20 7.09 -2.38 -0.02 0.19 16 43 H 0.10 0.74 7.61 -2.39 -0.02 0.72 16 Total: -1.00 -79.81 371.96 2.94 -76.87 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -0.52 Total: 28.17 kcal Atomic # 6 Polarization: 15.87 SS G_CDS: 7.34 Total: 23.21 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -5.40 Total: -120.28 kcal Atomic # 8 Polarization: -57.90 SS G_CDS: -0.29 Total: -58.19 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 1.80 Total: 50.22 kcal Total: -79.81 2.94 -76.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325045838.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.696 kcal (2) G-P(sol) polarization free energy of solvation -79.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds