Wall clock time and date at job start Tue Mar 31 2020 21:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34225 * 117.00144 * 2 1 4 4 O 1.20829 * 120.00211 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00107 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47385 * 180.02562 * 5 3 2 7 7 N 1.40061 * 125.99186 * 269.95951 * 6 5 3 8 8 C 1.30828 * 108.36047 * 179.75363 * 7 6 5 9 9 C 1.40339 * 108.20957 * 0.43600 * 8 7 6 10 10 N 1.40490 * 126.11050 * 179.81818 * 9 8 7 11 11 C 1.34770 * 120.00403 * 359.69491 * 10 9 8 12 12 O 1.21409 * 119.99847 * 0.02562 * 11 10 9 13 13 C 1.49328 * 120.00240 * 179.97438 * 11 10 9 14 14 O 1.21364 * 119.99702 * 359.97438 * 13 11 10 15 15 N 1.34777 * 119.99988 * 180.02562 * 13 11 10 16 16 C 1.46497 * 120.00015 * 180.02562 * 15 13 11 17 17 H 1.09003 * 109.46733 * 325.00143 * 16 15 13 18 18 C 1.53000 * 109.47145 * 84.99707 * 16 15 13 19 19 C 1.50694 * 109.47115 * 204.99781 * 16 15 13 20 20 H 1.08000 * 120.00563 * 359.97438 * 19 16 15 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 16 15 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 16 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 C 1.35225 * 125.99719 * 89.99520 * 6 5 3 28 28 C 1.50700 * 126.17608 * 359.95067 * 27 6 5 29 29 H 1.09002 * 109.47000 * 299.99885 * 1 2 3 30 30 H 1.09002 * 109.47167 * 59.99757 * 1 2 3 31 31 H 1.08995 * 109.47576 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47289 * 59.99941 * 5 3 2 33 33 H 1.09005 * 109.47176 * 300.00115 * 5 3 2 34 34 H 1.07999 * 125.89314 * 180.29524 * 8 7 6 35 35 H 0.97002 * 119.99195 * 179.69365 * 10 9 8 36 36 H 0.97005 * 120.00104 * 359.97438 * 15 13 11 37 37 H 1.09000 * 109.47156 * 59.99824 * 18 16 15 38 38 H 1.08997 * 109.47359 * 180.02562 * 18 16 15 39 39 H 1.09007 * 109.47356 * 300.00099 * 18 16 15 40 40 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 41 41 H 1.09002 * 109.46963 * 269.99512 * 28 27 6 42 42 H 1.09008 * 109.47458 * 29.99328 * 28 27 6 43 43 H 1.08996 * 109.47231 * 149.99812 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9818 2.6796 0.0002 7 7 4.2155 3.4694 -1.1327 8 6 4.5638 4.6664 -0.7358 9 6 4.5738 4.6775 0.6675 10 7 4.8986 5.7733 1.4846 11 6 5.2470 6.9498 0.9270 12 8 5.2797 7.0628 -0.2813 13 6 5.5917 8.1146 1.7955 14 8 5.5577 8.0020 3.0034 15 7 5.9396 9.2913 1.2379 16 6 6.2783 10.4339 2.0899 17 1 5.6585 10.4149 2.9864 18 6 7.7534 10.3537 2.4879 19 6 6.0307 11.7143 1.3349 20 1 5.6586 11.6805 0.3215 21 6 6.2801 12.9292 1.9374 22 7 6.7336 12.9705 3.1712 23 14 5.9738 14.5164 1.0012 24 1 6.3170 15.6746 1.8649 25 1 6.8182 14.5416 -0.2200 26 1 4.5421 14.5947 0.6148 27 6 4.2075 3.4411 1.0946 28 6 4.0762 2.9981 2.5290 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.9557 0.7809 -0.8908 33 1 3.9564 0.7805 0.8892 34 1 4.8046 5.5011 -1.3774 35 1 4.8721 5.6830 2.4500 36 1 5.9664 9.3814 0.2724 37 1 8.3732 10.3725 1.5915 38 1 8.0054 11.2035 3.1222 39 1 7.9326 9.4275 3.0341 40 1 6.9095 13.8252 3.5949 41 1 3.0592 3.1835 2.8748 42 1 4.2963 1.9329 2.6020 43 1 4.7779 3.5573 3.1477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325045840.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:43 Heat of formation + Delta-G solvation = -91.169877 kcal Electronic energy + Delta-G solvation = -28561.157923 eV Core-core repulsion = 24222.180283 eV Total energy + Delta-G solvation = -4338.977641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.81991 -41.67352 -41.24945 -39.55686 -37.71316 -37.04938 -36.08703 -34.61103 -34.31741 -32.55527 -31.08099 -29.67118 -28.12607 -27.66350 -27.35092 -25.81599 -23.48685 -22.96045 -21.87603 -21.24593 -21.02366 -19.67921 -19.03014 -18.52504 -18.11084 -17.80040 -17.63030 -17.30823 -16.99710 -16.86642 -16.53512 -16.01146 -15.84834 -15.23475 -15.11088 -14.88423 -14.65903 -14.47374 -14.40134 -13.96589 -13.75307 -13.72016 -13.46767 -13.11022 -13.06518 -13.01531 -12.88912 -12.78328 -12.54628 -12.27391 -12.23384 -12.13091 -11.92198 -11.89680 -11.75884 -11.15294 -10.66761 -10.56943 -10.43867 -9.95997 -8.87078 -8.18840 -6.35716 0.13764 0.58764 0.96597 1.02354 1.41037 1.47585 1.48490 1.56502 1.62784 1.84553 2.30134 2.40581 2.80586 3.11833 3.42356 3.53615 3.56959 3.63120 3.91445 4.06102 4.23422 4.26047 4.28797 4.30760 4.64560 4.68445 4.72294 4.84432 4.84930 4.91302 5.00708 5.03813 5.20625 5.32999 5.45631 5.55729 5.61596 5.78322 5.79138 6.03284 6.05452 6.42368 6.53720 6.61401 6.66694 6.83932 7.09531 7.36235 8.86996 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.026605 B = 0.001990 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.170180 B =14063.643827 C =14311.012479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.351 6.351 3 C 0.444 3.556 4 O -0.534 6.534 5 C 0.143 3.857 6 N -0.360 5.360 7 N -0.301 5.301 8 C 0.050 3.950 9 C -0.031 4.031 10 N -0.598 5.598 11 C 0.514 3.486 12 O -0.527 6.527 13 C 0.500 3.500 14 O -0.557 6.557 15 N -0.670 5.670 16 C 0.268 3.732 17 H 0.016 0.984 18 C -0.136 4.136 19 C -0.553 4.553 20 H 0.069 0.931 21 C 0.020 3.980 22 N -0.911 5.911 23 Si 0.971 3.029 24 H -0.283 1.283 25 H -0.267 1.267 26 H -0.273 1.273 27 C 0.085 3.915 28 C -0.097 4.097 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.138 0.862 32 H 0.165 0.835 33 H 0.186 0.814 34 H 0.196 0.804 35 H 0.429 0.571 36 H 0.410 0.590 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.022 0.978 40 H 0.268 0.732 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.234 -30.271 -3.001 31.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.266 6.266 3 C 0.286 3.714 4 O -0.422 6.422 5 C 0.022 3.978 6 N -0.145 5.145 7 N -0.122 5.122 8 C -0.137 4.137 9 C -0.134 4.134 10 N -0.245 5.245 11 C 0.296 3.704 12 O -0.403 6.403 13 C 0.280 3.720 14 O -0.437 6.437 15 N -0.320 5.320 16 C 0.165 3.835 17 H 0.034 0.966 18 C -0.194 4.194 19 C -0.591 4.591 20 H 0.087 0.913 21 C -0.181 4.181 22 N -0.549 5.549 23 Si 0.796 3.204 24 H -0.208 1.208 25 H -0.192 1.192 26 H -0.198 1.198 27 C -0.044 4.044 28 C -0.155 4.155 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.156 0.844 32 H 0.182 0.818 33 H 0.203 0.797 34 H 0.212 0.788 35 H 0.268 0.732 36 H 0.246 0.754 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.106 0.894 42 H 0.130 0.870 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.656 -30.677 -3.844 31.851 hybrid contribution -0.343 1.942 0.257 1.988 sum -7.998 -28.736 -3.587 30.043 Atomic orbital electron populations 1.23566 0.74525 1.05964 1.02287 1.86470 1.24991 1.31575 1.83582 1.24481 0.93077 0.81747 0.72081 1.90779 1.67753 1.37865 1.45823 1.21481 0.86648 0.77659 1.12033 1.47820 1.53274 1.10449 1.02986 1.77363 1.23015 1.03193 1.08607 1.24438 0.99317 0.95930 0.94042 1.17573 1.16118 0.88821 0.90917 1.42237 1.64019 1.07453 1.10810 1.20085 0.78472 0.83968 0.87868 1.90617 1.51651 1.83368 1.14651 1.20021 0.79425 0.84652 0.87910 1.90701 1.54167 1.83887 1.14979 1.46246 1.63600 1.10113 1.11993 1.18627 0.93026 0.81946 0.89871 0.96612 1.21922 0.97430 0.99938 1.00150 1.21459 1.45978 0.90687 1.00955 0.91252 1.25716 0.94157 1.02434 0.95787 1.70009 1.44382 1.27025 1.13503 0.85410 0.78740 0.77856 0.78415 1.20800 1.19151 1.19820 1.20912 1.01104 0.89784 0.92592 1.20725 1.04557 1.04760 0.85430 0.91977 0.92701 0.84385 0.81770 0.79726 0.78752 0.73192 0.75400 0.94181 0.90795 0.95932 0.92318 0.89414 0.87000 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.35 -3.93 10.56 -51.37 -0.54 -4.48 16 3 C 0.44 6.80 8.03 71.24 0.57 7.38 16 4 O -0.53 -13.59 16.18 21.95 0.36 -13.23 16 5 C 0.14 1.35 6.84 85.64 0.59 1.94 16 6 N -0.36 -7.16 3.11 -337.77 -1.05 -8.21 16 7 N -0.30 -8.33 12.56 -56.72 -0.71 -9.04 16 8 C 0.05 1.51 10.84 85.35 0.93 2.43 16 9 C -0.03 -0.83 6.86 37.71 0.26 -0.57 16 10 N -0.60 -16.91 5.45 -305.42 -1.67 -18.57 16 11 C 0.51 17.86 7.86 87.23 0.69 18.54 16 12 O -0.53 -19.42 13.63 -3.43 -0.05 -19.47 16 13 C 0.50 20.31 7.85 87.23 0.68 21.00 16 14 O -0.56 -24.74 16.14 -3.29 -0.05 -24.79 16 15 N -0.67 -29.22 5.06 -447.56 -2.27 -31.49 16 16 C 0.27 13.75 2.56 44.24 0.11 13.86 16 17 H 0.02 0.94 7.58 -2.39 -0.02 0.92 16 18 C -0.14 -6.69 9.26 71.98 0.67 -6.03 16 19 C -0.55 -29.46 8.73 25.60 0.22 -29.24 16 20 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 21 C 0.02 1.06 5.30 84.66 0.45 1.51 16 22 N -0.91 -51.08 11.32 21.45 0.24 -50.84 16 23 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 27 C 0.09 1.70 6.96 41.48 0.29 1.99 16 28 C -0.10 -1.00 9.93 71.24 0.71 -0.29 16 29 H 0.06 0.58 8.13 -2.39 -0.02 0.57 16 30 H 0.05 0.59 8.13 -2.39 -0.02 0.57 16 31 H 0.14 0.22 8.14 -2.39 -0.02 0.21 16 32 H 0.16 0.82 8.14 -2.39 -0.02 0.81 16 33 H 0.19 -0.09 7.06 -2.38 -0.02 -0.10 16 34 H 0.20 6.33 5.92 -2.91 -0.02 6.32 16 35 H 0.43 10.39 7.55 -92.71 -0.70 9.69 16 36 H 0.41 16.61 8.01 -92.70 -0.74 15.86 16 37 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 3.96 6.07 -2.39 -0.01 3.95 16 39 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.11 0.33 7.09 -2.38 -0.02 0.31 16 43 H 0.10 0.89 7.61 -2.39 -0.02 0.87 16 Total: -1.00 -77.32 376.34 3.29 -74.03 By element: Atomic # 1 Polarization: 28.22 SS G_CDS: -0.35 Total: 27.87 kcal Atomic # 6 Polarization: 26.62 SS G_CDS: 7.36 Total: 33.98 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -5.45 Total: -118.15 kcal Atomic # 8 Polarization: -61.68 SS G_CDS: -0.29 Total: -61.97 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -77.32 3.29 -74.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325045840.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.140 kcal (2) G-P(sol) polarization free energy of solvation -77.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds