Wall clock time and date at job start Tue Mar 31 2020 20:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00067 * 2 1 4 4 H 1.48502 * 109.46980 * 355.31954 * 3 2 1 5 5 H 1.48501 * 109.46832 * 115.31660 * 3 2 1 6 6 H 1.48495 * 109.47214 * 235.31903 * 3 2 1 7 7 C 1.38808 * 119.99758 * 180.27956 * 2 1 3 8 8 H 1.08004 * 120.00239 * 352.36434 * 7 2 1 9 9 N 1.36944 * 119.99887 * 172.36849 * 7 2 1 10 10 C 1.47058 * 136.05788 * 6.52764 * 9 7 2 11 11 C 1.53749 * 87.89054 * 152.96179 * 10 9 7 12 12 O 1.42899 * 114.39541 * 272.67544 * 11 10 9 13 13 C 1.53007 * 114.08694 * 139.77849 * 11 10 9 14 14 N 1.46494 * 109.46928 * 86.56529 * 13 11 10 15 15 C 1.34781 * 119.99862 * 179.97438 * 14 13 11 16 16 O 1.21280 * 119.99746 * 0.02562 * 15 14 13 17 17 C 1.50700 * 120.00044 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47009 * 180.02562 * 17 15 14 19 19 O 1.42897 * 109.47179 * 180.02562 * 18 17 15 20 20 C 1.35952 * 117.00293 * 180.02562 * 19 18 17 21 21 C 1.38705 * 120.02447 * 359.72042 * 20 19 18 22 22 C 1.38153 * 119.96472 * 179.79339 * 21 20 19 23 23 C 1.38461 * 120.03163 * 0.48548 * 22 21 20 24 24 F 1.35098 * 119.96865 * 179.72068 * 23 22 21 25 25 C 1.38456 * 120.05779 * 359.74750 * 23 22 21 26 26 C 1.38150 * 120.03069 * 0.02562 * 25 23 22 27 27 C 1.47066 * 136.05683 * 186.89762 * 9 7 2 28 28 H 0.96999 * 119.99710 * 185.10483 * 1 2 3 29 29 H 1.09001 * 113.46851 * 267.69866 * 10 9 7 30 30 H 1.09001 * 113.47037 * 38.13172 * 10 9 7 31 31 H 0.96703 * 113.99848 * 273.58159 * 12 11 10 32 32 H 1.09001 * 109.46510 * 206.56068 * 13 11 10 33 33 H 1.08998 * 109.47097 * 326.55971 * 13 11 10 34 34 H 0.96997 * 120.00500 * 359.97438 * 14 13 11 35 35 H 1.09004 * 109.46965 * 299.99944 * 17 15 14 36 36 H 1.08998 * 109.47319 * 60.00120 * 17 15 14 37 37 H 1.09001 * 109.47194 * 300.00184 * 18 17 15 38 38 H 1.08998 * 109.47177 * 59.99794 * 18 17 15 39 39 H 1.07997 * 120.01868 * 0.02562 * 21 20 19 40 40 H 1.08000 * 119.98436 * 180.20407 * 22 21 20 41 41 H 1.07997 * 119.98643 * 179.97438 * 25 23 22 42 42 H 1.07996 * 120.01397 * 179.97438 * 26 25 23 43 43 H 1.09007 * 113.46852 * 321.86298 * 27 9 7 44 44 H 1.08998 * 113.47074 * 92.24182 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2893 2.7441 -0.1142 5 1 3.0162 1.7470 1.2656 6 1 3.1876 1.6481 -1.1513 7 6 2.0102 -1.2021 -0.0059 8 1 1.4774 -2.1339 0.1139 9 7 3.3705 -1.2066 -0.1634 10 6 4.4319 -0.1910 -0.2326 11 6 5.4053 -1.2538 0.3029 12 8 5.4631 -1.3365 1.7283 13 6 6.7836 -1.2293 -0.3611 14 7 7.6440 -0.2695 0.3351 15 6 8.9127 -0.0789 -0.0777 16 8 9.3420 -0.7017 -1.0258 17 6 9.7977 0.9089 0.6380 18 6 11.1759 0.9333 -0.0259 19 8 12.0152 1.8694 0.6531 20 6 13.2834 2.0141 0.1851 21 6 13.7118 1.2659 -0.9014 22 6 14.9994 1.4170 -1.3786 23 6 15.8652 2.3075 -0.7667 24 9 17.1259 2.4502 -1.2309 25 6 15.4403 3.0515 0.3210 26 6 14.1517 2.9058 0.7973 27 6 4.4122 -2.2289 -0.3444 28 1 -0.4850 -0.8367 0.0747 29 1 4.6580 0.1320 -1.2487 30 1 4.2791 0.6438 0.4515 31 1 6.0897 -0.7211 2.1329 32 1 7.2300 -2.2223 -0.3082 33 1 6.6788 -0.9331 -1.4048 34 1 7.3006 0.2288 1.0931 35 1 9.3513 1.9019 0.5844 36 1 9.9020 0.6133 1.6819 37 1 11.6224 -0.0597 0.0273 38 1 11.0712 1.2291 -1.0697 39 1 13.0380 0.5682 -1.3763 40 1 15.3323 0.8370 -2.2267 41 1 16.1167 3.7455 0.7977 42 1 13.8207 3.4859 1.6460 43 1 4.2426 -3.1304 0.2445 44 1 4.6324 -2.4440 -1.3900 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325258369.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:28 Heat of formation + Delta-G solvation = -100.363248 kcal Electronic energy + Delta-G solvation = -27793.771301 eV Core-core repulsion = 23434.475044 eV Total energy + Delta-G solvation = -4359.296257 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.83268 -41.47202 -41.08058 -40.26245 -38.25182 -36.78834 -35.30590 -34.43693 -33.25519 -32.18016 -30.68875 -30.03482 -27.80119 -27.16267 -25.54033 -23.89339 -23.27131 -22.75245 -21.56582 -21.17562 -19.75571 -19.53600 -18.60076 -18.31139 -17.74089 -17.62108 -17.44940 -17.12074 -16.58078 -16.44296 -16.22421 -15.84440 -15.67364 -15.57982 -15.25441 -15.14095 -14.81447 -14.66939 -14.57176 -14.12681 -13.92112 -13.89716 -13.67013 -13.51686 -13.24750 -12.84890 -12.69671 -12.68995 -12.37770 -11.90213 -11.78773 -11.77016 -11.67780 -11.34135 -11.04538 -11.00596 -10.62496 -10.19714 -10.16867 -9.21841 -9.13613 -8.67696 -5.48347 0.15182 0.18251 1.35292 1.48284 1.56973 1.67665 1.68364 2.44252 2.54702 2.55626 2.88311 2.96468 3.18014 3.31339 3.32132 3.59205 3.74518 3.77195 3.79853 3.97636 4.01600 4.11911 4.27328 4.29953 4.42450 4.49382 4.57631 4.59272 4.65021 4.75583 4.76155 4.80668 4.82816 4.91129 5.03108 5.12426 5.14515 5.15940 5.22183 5.28278 5.68492 5.92617 6.29266 6.40730 6.67583 6.77270 7.14801 7.30196 8.23126 8.88040 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.027657 B = 0.001724 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.161069 B =16234.217582 C =16683.728595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.090 4.090 3 Si 1.114 2.886 4 H -0.307 1.307 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.290 4.290 8 H 0.045 0.955 9 N -0.655 5.655 10 C 0.068 3.932 11 C 0.106 3.894 12 O -0.537 6.537 13 C 0.120 3.880 14 N -0.717 5.717 15 C 0.524 3.476 16 O -0.579 6.579 17 C -0.132 4.132 18 C 0.072 3.928 19 O -0.315 6.315 20 C 0.113 3.887 21 C -0.186 4.186 22 C -0.117 4.117 23 C 0.037 3.963 24 F -0.151 7.151 25 C -0.112 4.112 26 C -0.126 4.126 27 C 0.127 3.873 28 H 0.244 0.756 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.387 0.613 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.414 0.586 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.162 0.838 42 H 0.160 0.840 43 H 0.047 0.953 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.444 6.534 2.457 35.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.281 4.281 3 Si 0.939 3.061 4 H -0.235 1.235 5 H -0.195 1.195 6 H -0.180 1.180 7 C -0.418 4.418 8 H 0.063 0.937 9 N -0.383 5.383 10 C -0.057 4.057 11 C 0.063 3.937 12 O -0.344 6.344 13 C -0.005 4.005 14 N -0.371 5.371 15 C 0.311 3.689 16 O -0.459 6.459 17 C -0.172 4.172 18 C -0.003 4.003 19 O -0.229 6.229 20 C 0.067 3.933 21 C -0.205 4.205 22 C -0.136 4.136 23 C 0.018 3.982 24 F -0.130 7.130 25 C -0.130 4.130 26 C -0.144 4.144 27 C 0.001 3.999 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.238 0.762 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.252 0.748 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.164 0.836 40 H 0.167 0.833 41 H 0.180 0.820 42 H 0.178 0.822 43 H 0.066 0.934 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 33.781 7.313 1.805 34.611 hybrid contribution -0.336 -1.767 0.036 1.799 sum 33.445 5.547 1.840 33.952 Atomic orbital electron populations 1.71034 1.06720 1.28528 1.55346 1.27234 0.96502 1.04899 0.99439 0.83228 0.73376 0.71283 0.78225 1.23526 1.19479 1.17997 1.19961 0.81031 0.94394 1.46408 0.93675 1.45769 1.01451 1.05160 1.85898 1.23781 0.87776 0.94418 0.99710 1.22712 0.91761 0.97260 0.81937 1.86656 1.66596 1.63837 1.17305 1.21652 0.87642 0.94278 0.96943 1.45780 1.12232 1.43539 1.35556 1.20690 0.82005 0.82733 0.83429 1.90736 1.74634 1.50456 1.30079 1.21440 0.92318 1.01008 1.02384 1.22475 0.89456 0.92167 0.96225 1.85977 1.20485 1.60388 1.56067 1.19216 0.84748 0.95740 0.93602 1.21346 0.97357 1.03141 0.98672 1.21157 0.93176 0.98312 1.00976 1.17864 0.80381 1.01822 0.98113 1.91471 1.37965 1.95163 1.88374 1.21217 0.96675 0.99764 0.95350 1.20545 0.91766 0.99741 1.02379 1.22649 0.85262 0.93352 0.98631 0.94671 0.91329 0.92698 0.76241 0.89805 0.89751 0.74815 0.85291 0.84974 0.91235 0.91407 0.83579 0.83307 0.82008 0.82222 0.93420 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.40 13.70 21.65 0.30 -63.10 16 2 C -0.09 -5.40 5.50 84.86 0.47 -4.94 16 3 Si 1.11 52.10 25.13 68.60 1.72 53.82 16 4 H -0.31 -14.88 7.11 99.48 0.71 -14.17 16 5 H -0.27 -11.27 6.64 99.48 0.66 -10.61 16 6 H -0.26 -10.43 6.13 99.48 0.61 -9.82 16 7 C -0.29 -17.15 11.08 84.03 0.93 -16.22 16 8 H 0.05 2.91 8.05 -2.91 -0.02 2.89 16 9 N -0.65 -31.11 3.69 -738.49 -2.73 -33.84 16 10 C 0.07 2.47 5.13 83.26 0.43 2.90 16 11 C 0.11 3.03 1.74 -10.37 -0.02 3.01 16 12 O -0.54 -15.13 13.56 -148.98 -2.02 -17.15 16 13 C 0.12 2.51 5.43 86.38 0.47 2.98 16 14 N -0.72 -10.64 5.34 -463.06 -2.47 -13.12 16 15 C 0.52 8.44 7.83 87.66 0.69 9.12 16 16 O -0.58 -14.17 15.98 -3.03 -0.05 -14.21 16 17 C -0.13 -1.20 6.07 29.85 0.18 -1.01 16 18 C 0.07 0.91 4.03 71.98 0.29 1.20 16 19 O -0.32 -4.34 10.14 -93.01 -0.94 -5.29 16 20 C 0.11 1.61 6.69 22.49 0.15 1.76 16 21 C -0.19 -2.61 9.04 22.36 0.20 -2.41 16 22 C -0.12 -1.64 10.02 22.30 0.22 -1.42 16 23 C 0.04 0.56 7.30 22.38 0.16 0.72 16 24 F -0.15 -2.58 17.27 44.97 0.78 -1.81 16 25 C -0.11 -1.30 10.02 22.30 0.22 -1.08 16 26 C -0.13 -1.47 9.98 22.36 0.22 -1.25 16 27 C 0.13 4.63 8.10 83.17 0.67 5.30 16 28 H 0.24 16.10 8.73 -92.71 -0.81 15.29 16 29 H 0.07 2.33 7.50 -2.39 -0.02 2.31 16 30 H 0.06 2.02 4.67 -2.39 -0.01 2.01 16 31 H 0.39 6.41 7.21 -74.06 -0.53 5.87 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.08 1.85 7.89 -2.39 -0.02 1.83 16 34 H 0.41 3.83 6.95 -92.71 -0.64 3.18 16 35 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.93 7.61 -2.39 -0.02 0.91 16 38 H 0.07 0.94 7.63 -2.39 -0.02 0.92 16 39 H 0.15 1.81 6.30 -2.91 -0.02 1.79 16 40 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 41 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 42 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 43 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 44 H 0.08 2.55 8.10 -2.39 -0.02 2.53 16 Total: -1.00 -81.93 370.02 -0.43 -82.36 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -0.30 Total: 13.66 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 5.29 Total: -1.33 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -4.91 Total: -110.05 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -3.01 Total: -36.65 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.81 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 1.72 Total: 53.82 kcal Total: -81.93 -0.43 -82.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325258369.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.000 kcal (2) G-P(sol) polarization free energy of solvation -81.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds