Wall clock time and date at job start Tue Mar 31 2020 22:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99590 * 2 1 4 4 O 1.20828 * 120.00024 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99934 * 180.02562 * 3 2 1 6 6 N 1.46496 * 109.47134 * 179.97438 * 5 3 2 7 7 C 1.36960 * 119.99814 * 262.46363 * 6 5 3 8 8 H 1.08003 * 119.99741 * 206.09337 * 7 6 5 9 9 C 1.38990 * 119.99809 * 26.09474 * 7 6 5 10 10 N 1.31401 * 120.00114 * 5.35337 * 9 7 6 11 11 Si 1.86798 * 119.99611 * 185.35362 * 9 7 6 12 12 H 1.48502 * 109.47277 * 359.97438 * 11 9 7 13 13 H 1.48502 * 109.47275 * 120.00065 * 11 9 7 14 14 H 1.48502 * 109.46842 * 240.00022 * 11 9 7 15 15 C 1.34776 * 120.00416 * 82.46475 * 6 5 3 16 16 O 1.21625 * 119.99508 * 356.32057 * 15 6 5 17 17 C 1.47439 * 120.00227 * 176.59795 * 15 6 5 18 18 C 1.36665 * 125.77677 * 185.97461 * 17 15 6 19 19 N 1.34842 * 106.82517 * 180.02562 * 18 17 15 20 20 C 1.46495 * 126.59294 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.47524 * 124.99771 * 20 19 18 22 22 C 1.52998 * 112.99609 * 48.17137 * 21 20 19 23 23 C 1.54037 * 113.81553 * 276.18905 * 21 20 19 24 24 O 1.44177 * 85.51527 * 223.19290 * 23 21 20 25 25 C 1.44180 * 93.34067 * 24.18970 * 24 23 21 26 26 N 1.40210 * 106.81500 * 359.97438 * 19 18 17 27 27 N 1.28760 * 108.38396 * 359.72612 * 26 19 18 28 28 H 1.08998 * 109.47296 * 60.00963 * 1 2 3 29 29 H 1.09001 * 109.46816 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47303 * 300.00365 * 1 2 3 31 31 H 1.08994 * 109.47260 * 59.99569 * 5 3 2 32 32 H 1.09002 * 109.46726 * 299.99552 * 5 3 2 33 33 H 0.97002 * 119.99705 * 180.02562 * 10 9 7 34 34 H 1.08000 * 126.59082 * 359.97438 * 18 17 15 35 35 H 1.08997 * 109.47200 * 244.99833 * 20 19 18 36 36 H 1.08997 * 109.47060 * 4.99635 * 20 19 18 37 37 H 1.09001 * 109.47071 * 60.00244 * 22 21 20 38 38 H 1.09007 * 109.47054 * 179.97438 * 22 21 20 39 39 H 1.08998 * 109.47349 * 299.99748 * 22 21 20 40 40 H 1.08995 * 113.86023 * 337.33699 * 23 21 20 41 41 H 1.08996 * 113.86372 * 109.04543 * 23 21 20 42 42 H 1.09004 * 113.86673 * 221.65596 * 25 24 23 43 43 H 1.09002 * 113.98070 * 89.97115 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9815 2.6799 -0.0011 7 6 4.3244 3.2922 -1.1772 8 1 5.0043 4.1313 -1.1710 9 6 3.7974 2.8336 -2.3788 10 7 2.8906 1.8826 -2.3781 11 14 4.3782 3.5693 -3.9946 12 1 5.3960 4.6163 -3.7243 13 1 4.9762 2.5028 -4.8375 14 1 3.2237 4.1739 -4.7065 15 6 4.0263 3.3699 1.1558 16 8 3.6582 2.8468 2.1903 17 6 4.5156 4.7607 1.1663 18 6 4.7191 5.5277 2.2789 19 7 5.1661 6.7256 1.8507 20 6 5.5212 7.8749 2.6868 21 6 6.9504 8.3169 2.3661 22 6 7.2110 8.4539 0.8647 23 6 8.0320 7.5179 3.1175 24 8 8.6635 8.7955 3.3359 25 6 7.4283 9.5253 3.1931 26 7 5.2269 6.6594 0.4515 27 7 4.8428 5.4868 0.0834 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9557 0.7811 -0.8907 32 1 3.9563 0.7808 0.8892 33 1 2.5231 1.5623 -3.2168 34 1 4.5529 5.2316 3.3042 35 1 4.8333 8.6963 2.4864 36 1 5.4551 7.5939 3.7379 37 1 6.5327 9.1965 0.4445 38 1 8.2414 8.7703 0.7021 39 1 7.0445 7.4930 0.3778 40 1 7.6739 7.0413 4.0299 41 1 8.6061 6.8454 2.4801 42 1 7.5236 10.4449 2.6157 43 1 6.8844 9.6629 4.1276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325389201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:13 Heat of formation + Delta-G solvation = 4.998760 kcal Electronic energy + Delta-G solvation = -30233.722945 eV Core-core repulsion = 25898.915489 eV Total energy + Delta-G solvation = -4334.807456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76570 -40.80201 -39.33454 -38.01225 -35.36032 -34.99164 -34.52875 -31.93244 -31.45167 -30.25287 -28.41892 -27.58100 -26.92131 -26.32311 -25.59004 -24.77271 -22.38870 -21.73198 -20.31524 -19.53488 -19.04491 -17.99674 -16.74472 -16.64682 -16.49098 -16.22661 -15.84471 -15.73155 -15.42107 -15.11908 -15.05453 -14.39764 -14.31429 -13.94186 -13.83890 -13.44232 -13.20019 -12.89918 -12.60017 -12.45054 -12.31226 -12.20944 -11.97580 -11.70436 -11.36983 -11.27125 -11.24104 -11.08997 -11.02397 -10.79735 -10.70358 -10.28721 -10.06354 -9.85974 -9.75724 -9.66068 -9.34237 -8.97311 -8.79412 -8.57585 -7.82485 -6.38359 -3.92176 1.64278 2.36032 2.53633 3.22300 3.29670 3.33811 3.37078 3.67221 3.78358 3.80442 4.10979 4.20099 4.38969 4.48789 4.57360 4.68856 4.85430 4.91696 4.95744 5.04185 5.15551 5.25932 5.50778 5.56886 5.58951 5.70441 5.73851 5.78509 5.80945 5.82353 5.85183 5.90384 5.99624 6.19837 6.29726 6.42599 6.58024 6.77215 6.80239 7.51786 7.63377 7.70736 8.48126 8.62267 9.09507 9.17632 9.39627 9.75735 10.69226 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.003412 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.470752 B = 8205.434900 C = 9483.889727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.489 3.511 4 O -0.501 6.501 5 C 0.158 3.842 6 N -0.407 5.407 7 C -0.320 4.320 8 H 0.139 0.861 9 C 0.035 3.965 10 N -0.884 5.884 11 Si 0.931 3.069 12 H -0.263 1.263 13 H -0.282 1.282 14 H -0.283 1.283 15 C 0.537 3.463 16 O -0.603 6.603 17 C -0.046 4.046 18 C 0.061 3.939 19 N -0.370 5.370 20 C 0.133 3.867 21 C -0.141 4.141 22 C -0.134 4.134 23 C 0.043 3.957 24 O -0.376 6.376 25 C 0.049 3.951 26 N -0.090 5.090 27 N -0.177 5.177 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.271 0.729 34 H 0.194 0.806 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.324 7.961 8.717 12.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.293 6.293 3 C 0.330 3.670 4 O -0.386 6.386 5 C 0.033 3.967 6 N -0.123 5.123 7 C -0.449 4.449 8 H 0.156 0.844 9 C -0.168 4.168 10 N -0.524 5.524 11 Si 0.758 3.242 12 H -0.187 1.187 13 H -0.208 1.208 14 H -0.209 1.209 15 C 0.325 3.675 16 O -0.489 6.489 17 C -0.184 4.184 18 C -0.095 4.095 19 N -0.156 5.156 20 C 0.010 3.990 21 C -0.142 4.142 22 C -0.191 4.191 23 C -0.034 4.034 24 O -0.294 6.294 25 C -0.029 4.029 26 N -0.069 5.069 27 N -0.049 5.049 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.148 0.852 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.211 0.789 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.425 8.768 7.837 12.951 hybrid contribution -0.770 -0.056 -0.047 0.773 sum 4.656 8.712 7.790 12.580 Atomic orbital electron populations 1.22913 0.78839 1.01709 1.01574 1.86452 1.21555 1.35515 1.85785 1.23808 0.92168 0.80518 0.70502 1.90520 1.66464 1.36389 1.45188 1.20555 0.87387 0.85134 1.03662 1.43264 1.54550 1.07903 1.06587 1.20767 1.26000 1.16002 0.82083 0.84443 1.25379 0.94796 0.96416 1.00240 1.69667 1.26679 1.28232 1.27856 0.85759 0.78719 0.78948 0.80744 1.18684 1.20844 1.20883 1.16724 0.83143 0.83106 0.84494 1.90643 1.55213 1.69829 1.33217 1.21458 1.10688 0.98250 0.88031 1.23165 0.99526 0.85422 1.01339 1.50288 1.46360 1.10838 1.08162 1.21978 0.96403 0.86934 0.93645 1.24075 0.93789 0.96619 0.99677 1.21793 1.01546 1.05014 0.90785 1.24147 0.92562 0.88099 0.98585 1.89704 1.27108 1.18156 1.94441 1.24025 0.84632 0.95853 0.98362 1.81911 1.22867 1.15360 0.86780 1.75021 1.07456 0.97955 1.24507 0.92705 0.89666 0.93215 0.85200 0.90341 0.91878 0.78875 0.88487 0.87963 0.91549 0.92129 0.89132 0.89886 0.88757 0.88585 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.22 10.57 -39.26 -0.41 -8.63 16 3 C 0.49 12.33 6.02 36.01 0.22 12.55 16 4 O -0.50 -14.28 15.65 -18.75 -0.29 -14.57 16 5 C 0.16 3.82 5.08 -5.20 -0.03 3.80 16 6 N -0.41 -10.49 2.19 -117.31 -0.26 -10.75 16 7 C -0.32 -8.34 8.69 -14.98 -0.13 -8.47 16 8 H 0.14 3.55 4.84 -52.48 -0.25 3.29 16 9 C 0.03 0.90 5.18 -17.46 -0.09 0.81 16 10 N -0.88 -23.43 8.82 55.50 0.49 -22.94 16 11 Si 0.93 20.66 29.56 -169.99 -5.02 15.63 16 12 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.54 13.39 7.33 -12.51 -0.09 13.30 16 16 O -0.60 -15.60 16.59 5.26 0.09 -15.51 16 17 C -0.05 -0.98 6.74 -83.56 -0.56 -1.54 16 18 C 0.06 0.99 11.28 -16.80 -0.19 0.80 16 19 N -0.37 -5.27 3.65 -61.04 -0.22 -5.50 16 20 C 0.13 1.19 6.10 -4.04 -0.02 1.17 16 21 C -0.14 -1.28 1.23 -153.43 -0.19 -1.46 16 22 C -0.13 -1.48 8.22 37.16 0.31 -1.17 16 23 C 0.04 0.41 8.36 37.61 0.31 0.72 16 24 O -0.38 -4.02 12.37 -35.23 -0.44 -4.46 16 25 C 0.05 0.36 8.36 37.60 0.31 0.68 16 26 N -0.09 -1.64 10.44 60.35 0.63 -1.01 16 27 N -0.18 -3.88 8.82 32.84 0.29 -3.59 16 28 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 31 H 0.13 3.12 6.46 -51.93 -0.34 2.79 16 32 H 0.08 1.73 7.72 -51.93 -0.40 1.33 16 33 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.19 2.52 8.06 -52.49 -0.42 2.10 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.10 0.63 7.87 -51.93 -0.41 0.22 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 39 H 0.09 1.26 5.59 -51.93 -0.29 0.97 16 40 H 0.08 0.65 7.96 -51.93 -0.41 0.24 16 41 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 42 H 0.10 0.62 8.10 -51.93 -0.42 0.20 16 43 H 0.08 0.44 8.10 -51.93 -0.42 0.02 16 LS Contribution 363.01 15.07 5.47 5.47 Total: -1.00 -34.82 363.01 -4.22 -39.04 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -5.45 Total: 3.78 kcal Atomic # 6 Polarization: 22.12 SS G_CDS: 0.91 Total: 23.03 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.93 Total: -43.77 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -1.06 Total: -43.18 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.82 -4.22 -39.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325389201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.039 kcal (2) G-P(sol) polarization free energy of solvation -34.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds