Wall clock time and date at job start Tue Mar 31 2020 20:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34984 * 125.97051 * 124.71506 * 10 9 7 12 12 C 1.35217 * 107.87462 * 179.84385 * 11 10 9 13 13 C 1.40464 * 107.86670 * 0.41931 * 12 11 10 14 14 N 1.39926 * 125.97950 * 179.76276 * 13 12 11 15 15 C 1.34778 * 120.00378 * 0.02562 * 14 13 12 16 16 O 1.21383 * 119.99734 * 359.97438 * 15 14 13 17 17 C 1.49342 * 120.00255 * 180.02562 * 15 14 13 18 18 O 1.21361 * 119.99896 * 359.97438 * 17 15 14 19 19 N 1.34769 * 120.00083 * 180.02562 * 17 15 14 20 20 O 1.41604 * 119.99985 * 179.97438 * 19 17 15 21 21 C 1.42901 * 113.99661 * 179.97438 * 20 19 17 22 22 H 1.08996 * 109.48636 * 329.98143 * 21 20 19 23 23 C 1.53096 * 109.47748 * 209.94307 * 21 20 19 24 24 C 1.53177 * 109.16095 * 182.41029 * 23 21 20 25 25 C 1.53184 * 109.03860 * 56.98265 * 24 23 21 26 26 C 1.53091 * 109.16035 * 303.01835 * 25 24 23 27 27 O 1.42902 * 109.41594 * 57.60821 * 26 25 24 28 28 N 1.31278 * 108.03506 * 359.74300 * 13 12 11 29 29 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 31 31 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 32 32 H 1.08001 * 126.06518 * 0.02562 * 11 10 9 33 33 H 1.07998 * 126.06928 * 180.12798 * 12 11 10 34 34 H 0.97007 * 120.00072 * 180.02562 * 14 13 12 35 35 H 0.97008 * 120.00309 * 0.02562 * 19 17 15 36 36 H 1.08994 * 109.52188 * 302.31603 * 23 21 20 37 37 H 1.08993 * 109.52053 * 62.50815 * 23 21 20 38 38 H 1.09002 * 109.54668 * 297.11198 * 24 23 21 39 39 H 1.09003 * 109.61965 * 176.89293 * 24 23 21 40 40 H 1.08994 * 109.52458 * 183.11185 * 25 24 23 41 41 H 1.09003 * 109.57146 * 62.95437 * 25 24 23 42 42 H 1.08998 * 109.48012 * 297.62436 * 26 25 24 43 43 H 1.09001 * 109.48555 * 177.59272 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2453 -4.6196 0.8985 12 6 3.2601 -5.4431 0.5513 13 6 3.8692 -4.9150 -0.5990 14 7 4.9632 -5.4651 -1.2761 15 6 5.5269 -6.6058 -0.8314 16 8 5.0857 -7.1556 0.1568 17 6 6.6948 -7.1926 -1.5538 18 8 7.1361 -6.6427 -2.5415 19 7 7.2581 -8.3335 -1.1094 20 8 8.3652 -8.8902 -1.7947 21 6 8.8606 -10.0982 -1.2138 22 1 8.6827 -10.0842 -0.1385 23 6 10.3635 -10.2143 -1.4814 24 6 10.8753 -11.5395 -0.9085 25 6 10.0829 -12.6927 -1.5321 26 6 8.5909 -12.4808 -1.2625 27 8 8.1870 -11.2171 -1.7937 28 7 3.2322 -3.8152 -0.9278 29 1 -0.4849 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 1.5839 -4.7468 1.7428 33 1 3.5536 -6.3441 1.0694 34 1 5.3160 -5.0256 -2.0656 35 1 6.9046 -8.7737 -0.3205 36 1 10.5453 -10.1876 -2.5558 37 1 10.8839 -9.3852 -1.0022 38 1 10.7388 -11.5462 0.1729 39 1 11.9334 -11.6554 -1.1431 40 1 10.4027 -13.6358 -1.0892 41 1 10.2589 -12.7171 -2.6075 42 1 8.4097 -12.4980 -0.1878 43 1 8.0185 -13.2757 -1.7405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326117039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:48 Heat of formation + Delta-G solvation = -21.311103 kcal Electronic energy + Delta-G solvation = -27943.698629 eV Core-core repulsion = 23607.750292 eV Total energy + Delta-G solvation = -4335.948337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.12646 -40.34224 -39.95719 -38.54313 -37.18010 -35.12988 -34.33431 -33.41529 -32.78212 -31.08156 -30.53249 -29.45910 -27.07062 -25.62111 -25.03554 -23.97498 -22.93522 -21.68677 -21.02303 -20.40229 -19.84737 -19.15853 -18.00836 -17.34531 -16.96897 -16.64599 -16.58789 -16.30237 -16.11242 -15.39644 -15.22781 -15.07795 -14.65756 -14.57220 -14.24935 -13.89645 -13.84705 -13.68067 -13.38444 -13.00162 -12.97374 -12.45172 -12.31366 -12.01759 -11.93279 -11.77143 -11.67170 -11.61493 -11.09524 -11.00163 -10.86819 -10.60750 -10.28201 -10.22681 -10.07028 -9.69341 -9.57671 -9.52674 -8.64975 -8.27730 -7.63006 -6.26471 -4.31896 0.95268 1.09686 2.60366 2.62760 2.95830 3.01590 3.25678 3.29030 3.33635 3.59778 3.61663 3.91694 4.04615 4.12176 4.22129 4.25615 4.27565 4.32645 4.48422 4.74416 4.91969 5.05761 5.08872 5.13180 5.27167 5.37839 5.38851 5.40545 5.61130 5.66166 6.02885 6.07727 6.19579 6.35456 6.52700 6.65234 6.77322 7.00189 7.16823 7.29666 7.58494 7.67154 7.80528 7.86276 7.94632 8.49844 8.76101 9.34101 10.82271 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031154 B = 0.001740 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.535720 B =16083.709843 C =16621.164673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.532 4.532 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.313 5.313 11 C 0.055 3.945 12 C -0.285 4.285 13 C 0.250 3.750 14 N -0.592 5.592 15 C 0.530 3.470 16 O -0.497 6.497 17 C 0.528 3.472 18 O -0.493 6.493 19 N -0.568 5.568 20 O -0.110 6.110 21 C 0.228 3.772 22 H 0.076 0.924 23 C -0.139 4.139 24 C -0.119 4.119 25 C -0.162 4.162 26 C 0.069 3.931 27 O -0.397 6.397 28 N -0.291 5.291 29 H 0.268 0.732 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.426 0.574 35 H 0.423 0.577 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.055 0.945 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.545 -25.659 1.347 31.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.095 5.095 11 C -0.096 4.096 12 C -0.316 4.316 13 C -0.003 4.003 14 N -0.240 5.240 15 C 0.309 3.691 16 O -0.370 6.370 17 C 0.309 3.691 18 O -0.365 6.365 19 N -0.273 5.273 20 O -0.113 6.113 21 C 0.131 3.869 22 H 0.093 0.907 23 C -0.178 4.178 24 C -0.157 4.157 25 C -0.200 4.200 26 C -0.007 4.007 27 O -0.318 6.318 28 N -0.123 5.123 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.188 0.812 33 H 0.179 0.821 34 H 0.263 0.737 35 H 0.266 0.734 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 18.176 -24.343 0.180 30.381 hybrid contribution 0.687 0.010 0.776 1.037 sum 18.864 -24.333 0.956 30.803 Atomic orbital electron populations 1.69906 1.06040 1.27810 1.49503 1.24937 0.94992 0.99564 0.94478 0.86372 0.79378 0.81702 0.78979 1.19871 1.21031 1.20032 1.21211 0.94001 0.89336 1.52462 0.91271 1.19816 0.85540 0.81179 0.99495 1.49194 1.22836 1.19779 1.17675 1.22588 1.00222 0.90065 0.96684 1.21511 1.02277 1.06393 1.01454 1.18950 0.91401 0.94882 0.95042 1.41836 1.28795 1.23177 1.30239 1.19239 0.83533 0.81578 0.84784 1.90731 1.61768 1.59857 1.24646 1.19885 0.83768 0.80228 0.85264 1.90833 1.61505 1.59536 1.24633 1.47090 1.26672 1.24196 1.29307 1.90697 1.36434 1.36665 1.47553 1.23467 0.90774 0.78280 0.94400 0.90683 1.22081 0.92025 0.99377 1.04306 1.21608 1.00642 0.93002 1.00415 1.22277 0.95848 0.99224 1.02652 1.22607 0.94900 0.84527 0.98645 1.87902 1.64293 1.14567 1.65061 1.77426 1.03171 1.15682 1.15988 0.92223 0.93482 0.92315 0.81153 0.82095 0.73657 0.73433 0.89401 0.89334 0.91250 0.90154 0.90157 0.90478 0.92709 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.58 9.24 -34.44 -0.32 -14.90 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.26 6.37 6.26 -5.19 -0.03 6.34 16 10 N -0.31 -7.03 3.67 -62.55 -0.23 -7.26 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 12 C -0.29 -5.27 9.60 -39.82 -0.38 -5.65 16 13 C 0.25 4.87 8.10 -154.55 -1.25 3.62 16 14 N -0.59 -9.50 5.43 -11.58 -0.06 -9.56 16 15 C 0.53 7.63 7.85 -11.64 -0.09 7.54 16 16 O -0.50 -7.48 13.60 5.47 0.07 -7.41 16 17 C 0.53 7.13 8.03 -11.64 -0.09 7.03 16 18 O -0.49 -7.94 16.88 -12.69 -0.21 -8.16 16 19 N -0.57 -6.31 6.36 30.88 0.20 -6.11 16 20 O -0.11 -1.27 11.00 -42.01 -0.46 -1.73 16 21 C 0.23 1.80 3.44 37.21 0.13 1.92 16 22 H 0.08 0.43 7.83 -51.93 -0.41 0.03 16 23 C -0.14 -0.81 5.79 -26.59 -0.15 -0.96 16 24 C -0.12 -0.44 6.03 -26.55 -0.16 -0.60 16 25 C -0.16 -0.62 6.14 -26.59 -0.16 -0.78 16 26 C 0.07 0.36 6.84 37.20 0.25 0.61 16 27 O -0.40 -3.54 10.66 -59.04 -0.63 -4.17 16 28 N -0.29 -6.59 12.42 31.41 0.39 -6.20 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.17 2.55 8.06 -52.49 -0.42 2.13 16 33 H 0.16 2.75 5.91 -52.49 -0.31 2.44 16 34 H 0.43 6.28 8.29 -40.82 -0.34 5.94 16 35 H 0.42 3.65 7.83 -40.82 -0.32 3.33 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -33.52 373.77 -7.71 -41.23 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.57 Total: 5.17 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -2.56 Total: 6.62 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 1.03 Total: -53.41 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.23 Total: -21.47 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.52 -7.71 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326117039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.918 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds