Wall clock time and date at job start Tue Mar 31 2020 20:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48497 * 109.46762 * 240.00249 * 3 2 1 5 5 H 1.48506 * 109.46725 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99904 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34984 * 125.97051 * 124.71506 * 10 9 7 12 12 C 1.35217 * 107.87462 * 179.84385 * 11 10 9 13 13 C 1.40464 * 107.86670 * 0.41931 * 12 11 10 14 14 N 1.39926 * 125.97950 * 179.76276 * 13 12 11 15 15 C 1.34778 * 120.00378 * 0.02562 * 14 13 12 16 16 O 1.21383 * 119.99734 * 359.97438 * 15 14 13 17 17 C 1.49342 * 120.00255 * 180.02562 * 15 14 13 18 18 O 1.21361 * 119.99896 * 359.97438 * 17 15 14 19 19 N 1.34769 * 120.00083 * 180.02562 * 17 15 14 20 20 O 1.41604 * 119.99985 * 179.97438 * 19 17 15 21 21 C 1.42901 * 113.99661 * 179.97438 * 20 19 17 22 22 H 1.08996 * 109.48636 * 329.98143 * 21 20 19 23 23 C 1.53096 * 109.47748 * 209.94307 * 21 20 19 24 24 C 1.53177 * 109.16095 * 182.41029 * 23 21 20 25 25 C 1.53184 * 109.03860 * 56.98265 * 24 23 21 26 26 C 1.53091 * 109.16035 * 303.01835 * 25 24 23 27 27 O 1.42902 * 109.41594 * 57.60821 * 26 25 24 28 28 N 1.31278 * 108.03506 * 359.74300 * 13 12 11 29 29 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 31 31 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 32 32 H 1.08001 * 126.06518 * 0.02562 * 11 10 9 33 33 H 1.07998 * 126.06928 * 180.12798 * 12 11 10 34 34 H 0.97007 * 120.00072 * 180.02562 * 14 13 12 35 35 H 0.97008 * 120.00309 * 0.02562 * 19 17 15 36 36 H 1.08994 * 109.52188 * 302.31603 * 23 21 20 37 37 H 1.08993 * 109.52053 * 62.50815 * 23 21 20 38 38 H 1.09002 * 109.54668 * 297.11198 * 24 23 21 39 39 H 1.09003 * 109.61965 * 176.89293 * 24 23 21 40 40 H 1.08994 * 109.52458 * 183.11185 * 25 24 23 41 41 H 1.09003 * 109.57146 * 62.95437 * 25 24 23 42 42 H 1.08998 * 109.48012 * 297.62436 * 26 25 24 43 43 H 1.09001 * 109.48555 * 177.59272 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2453 -4.6196 0.8985 12 6 3.2601 -5.4431 0.5513 13 6 3.8692 -4.9150 -0.5990 14 7 4.9632 -5.4651 -1.2761 15 6 5.5269 -6.6058 -0.8314 16 8 5.0857 -7.1556 0.1568 17 6 6.6948 -7.1926 -1.5538 18 8 7.1361 -6.6427 -2.5415 19 7 7.2581 -8.3335 -1.1094 20 8 8.3652 -8.8902 -1.7947 21 6 8.8606 -10.0982 -1.2138 22 1 8.6827 -10.0842 -0.1385 23 6 10.3635 -10.2143 -1.4814 24 6 10.8753 -11.5395 -0.9085 25 6 10.0829 -12.6927 -1.5321 26 6 8.5909 -12.4808 -1.2625 27 8 8.1870 -11.2171 -1.7937 28 7 3.2322 -3.8152 -0.9278 29 1 -0.4849 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 1.5839 -4.7468 1.7428 33 1 3.5536 -6.3441 1.0694 34 1 5.3160 -5.0256 -2.0656 35 1 6.9046 -8.7737 -0.3205 36 1 10.5453 -10.1876 -2.5558 37 1 10.8839 -9.3852 -1.0022 38 1 10.7388 -11.5462 0.1729 39 1 11.9334 -11.6554 -1.1431 40 1 10.4027 -13.6358 -1.0892 41 1 10.2589 -12.7171 -2.6075 42 1 8.4097 -12.4980 -0.1878 43 1 8.0185 -13.2757 -1.7405 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326117039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:47 Heat of formation + Delta-G solvation = -44.111575 kcal Electronic energy + Delta-G solvation = -27944.687331 eV Core-core repulsion = 23607.750292 eV Total energy + Delta-G solvation = -4336.937040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.48763 -41.53691 -40.69023 -39.67359 -38.03891 -36.52188 -35.33399 -34.76323 -33.69445 -32.84639 -31.08324 -31.02319 -28.82731 -26.74090 -25.73904 -24.71487 -24.46092 -22.91284 -22.07142 -21.43479 -21.00479 -20.18333 -19.10123 -18.67488 -18.10096 -18.06980 -17.76710 -17.25849 -17.15216 -16.84498 -16.21736 -16.06892 -15.75646 -15.67215 -15.38316 -15.23196 -14.62508 -14.50689 -14.27872 -14.19729 -13.91735 -13.87317 -13.72214 -13.62888 -13.06859 -12.84224 -12.67741 -12.43635 -12.30076 -12.16557 -12.16119 -11.97006 -11.67079 -11.44747 -11.41322 -11.00971 -10.71227 -10.63007 -10.44029 -9.84345 -9.22920 -8.32685 -6.46085 -0.09055 -0.01530 1.12481 1.36249 1.39511 1.41519 1.50321 1.67792 2.15831 2.19290 2.36451 2.48020 2.95855 2.99931 3.34223 3.55636 3.66394 3.89724 3.90583 3.94847 4.08315 4.22058 4.38536 4.57197 4.59563 4.71378 4.79342 4.83299 4.87430 4.93898 4.94493 5.03712 5.03964 5.08477 5.23108 5.34515 5.53626 5.57344 5.75686 5.79086 5.98044 6.08475 6.25700 6.46876 6.64695 6.69370 6.95486 7.23813 8.74906 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031154 B = 0.001740 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.535720 B =16083.709843 C =16621.164673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.053 0.947 9 C 0.271 3.729 10 N -0.338 5.338 11 C 0.062 3.938 12 C -0.285 4.285 13 C 0.258 3.742 14 N -0.594 5.594 15 C 0.541 3.459 16 O -0.498 6.498 17 C 0.536 3.464 18 O -0.523 6.523 19 N -0.551 5.551 20 O -0.133 6.133 21 C 0.219 3.781 22 H 0.100 0.900 23 C -0.137 4.137 24 C -0.115 4.115 25 C -0.160 4.160 26 C 0.061 3.939 27 O -0.427 6.427 28 N -0.340 5.340 29 H 0.273 0.727 30 H 0.023 0.977 31 H 0.064 0.936 32 H 0.208 0.792 33 H 0.180 0.820 34 H 0.430 0.570 35 H 0.434 0.566 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.980 -27.156 2.835 33.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.180 4.180 3 Si 0.793 3.207 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.071 0.929 9 C 0.152 3.848 10 N -0.120 5.120 11 C -0.087 4.087 12 C -0.316 4.316 13 C 0.004 3.996 14 N -0.244 5.244 15 C 0.320 3.680 16 O -0.371 6.371 17 C 0.317 3.683 18 O -0.398 6.398 19 N -0.256 5.256 20 O -0.136 6.136 21 C 0.123 3.877 22 H 0.117 0.883 23 C -0.176 4.176 24 C -0.153 4.153 25 C -0.197 4.197 26 C -0.014 4.014 27 O -0.349 6.349 28 N -0.171 5.171 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.225 0.775 33 H 0.197 0.803 34 H 0.269 0.731 35 H 0.280 0.720 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.119 0.881 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 19.629 -25.909 1.701 32.549 hybrid contribution 0.326 0.246 0.333 0.527 sum 19.955 -25.662 2.033 32.571 Atomic orbital electron populations 1.69979 1.07120 1.28805 1.49828 1.25695 0.95823 1.02596 0.93903 0.85440 0.78312 0.78063 0.78858 1.20130 1.19822 1.19387 1.21386 0.93433 0.91038 1.52966 0.92909 1.19400 0.85600 0.81331 0.98443 1.48922 1.23403 1.20507 1.19211 1.23270 1.00373 0.88466 0.96556 1.21768 1.01975 1.06785 1.01078 1.19237 0.91343 0.93928 0.95048 1.41904 1.28263 1.23761 1.30459 1.19347 0.83393 0.80805 0.84452 1.90713 1.61869 1.59763 1.24727 1.19499 0.83378 0.80714 0.84747 1.90827 1.62401 1.60632 1.25923 1.46913 1.26303 1.23285 1.29077 1.90702 1.35968 1.38484 1.48480 1.23878 0.91427 0.76987 0.95391 0.88264 1.22142 0.90705 1.01095 1.03686 1.21638 1.01085 0.91436 1.01095 1.22268 0.95010 1.00290 1.02179 1.22868 0.95863 0.83113 0.99606 1.87854 1.65081 1.15886 1.66061 1.77337 1.04504 1.17757 1.17473 0.91844 0.95917 0.91786 0.77497 0.80329 0.73132 0.72005 0.90886 0.88602 0.89790 0.89002 0.88113 0.91621 0.91068 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.58 13.29 21.45 0.28 -51.29 16 2 C 0.02 1.12 5.46 84.65 0.46 1.59 16 3 Si 0.97 43.54 29.54 68.60 2.03 45.56 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.55 -30.69 9.24 25.60 0.24 -30.45 16 8 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 9 C 0.27 13.71 6.26 85.63 0.54 14.25 16 10 N -0.34 -15.33 3.67 -351.82 -1.29 -16.62 16 11 C 0.06 2.25 11.43 83.51 0.95 3.20 16 12 C -0.29 -10.12 9.60 22.12 0.21 -9.90 16 13 C 0.26 9.99 8.10 133.40 1.08 11.07 16 14 N -0.59 -18.88 5.43 -308.89 -1.68 -20.56 16 15 C 0.54 14.99 7.85 87.24 0.69 15.68 16 16 O -0.50 -14.04 13.60 -3.35 -0.05 -14.09 16 17 C 0.54 14.07 8.03 87.24 0.70 14.77 16 18 O -0.52 -16.81 16.88 14.11 0.24 -16.57 16 19 N -0.55 -11.55 6.36 -174.59 -1.11 -12.66 16 20 O -0.13 -2.94 11.00 -9.59 -0.11 -3.04 16 21 C 0.22 3.14 3.44 72.01 0.25 3.39 16 22 H 0.10 0.90 7.83 -2.39 -0.02 0.88 16 23 C -0.14 -1.41 5.79 30.69 0.18 -1.23 16 24 C -0.12 -0.58 6.03 30.71 0.19 -0.39 16 25 C -0.16 -0.89 6.14 30.69 0.19 -0.70 16 26 C 0.06 0.51 6.84 72.01 0.49 1.00 16 27 O -0.43 -7.14 10.66 -126.21 -1.35 -8.49 16 28 N -0.34 -15.60 12.42 -54.53 -0.68 -16.28 16 29 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.06 3.12 8.07 -2.38 -0.02 3.10 16 32 H 0.21 5.68 8.06 -2.91 -0.02 5.66 16 33 H 0.18 5.66 5.91 -2.91 -0.02 5.64 16 34 H 0.43 12.84 8.29 -92.70 -0.77 12.07 16 35 H 0.43 6.69 7.83 -92.70 -0.73 5.96 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 41 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -72.48 373.77 2.04 -70.44 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -0.42 Total: 21.34 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: 6.16 Total: 22.26 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -4.47 Total: -117.41 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.26 Total: -42.19 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -72.48 2.04 -70.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326117039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.331 kcal (2) G-P(sol) polarization free energy of solvation -72.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds