Wall clock time and date at job start Tue Mar 31 2020 20:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86809 * 119.99846 * 2 1 4 4 H 1.48496 * 109.46922 * 270.00547 * 3 2 1 5 5 H 1.48497 * 109.46868 * 30.00127 * 3 2 1 6 6 H 1.48492 * 109.47054 * 150.00292 * 3 2 1 7 7 C 1.37870 * 120.00418 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00592 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00012 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47431 * 179.97438 * 9 7 2 11 11 C 1.34989 * 125.97333 * 125.01960 * 10 9 7 12 12 C 1.35211 * 107.87529 * 180.02562 * 11 10 9 13 13 C 1.40463 * 107.86980 * 0.02562 * 12 11 10 14 14 N 1.39935 * 125.98248 * 180.02562 * 13 12 11 15 15 C 1.34777 * 119.99690 * 359.97438 * 14 13 12 16 16 O 1.21381 * 120.00194 * 0.02562 * 15 14 13 17 17 C 1.49348 * 119.99732 * 180.02562 * 15 14 13 18 18 O 1.21359 * 119.99775 * 359.97438 * 17 15 14 19 19 N 1.34777 * 119.99732 * 179.97438 * 17 15 14 20 20 O 1.41598 * 119.99789 * 179.97438 * 19 17 15 21 21 C 1.42900 * 114.00222 * 179.97438 * 20 19 17 22 22 H 1.09000 * 109.47893 * 30.01725 * 21 20 19 23 23 C 1.53092 * 109.48305 * 150.05768 * 21 20 19 24 24 C 1.53174 * 109.16086 * 177.59092 * 23 21 20 25 25 C 1.53181 * 109.04060 * 303.01614 * 24 23 21 26 26 C 1.53089 * 109.15782 * 56.98353 * 25 24 23 27 27 O 1.42905 * 109.47939 * 269.99993 * 21 20 19 28 28 N 1.31272 * 108.03658 * 359.97438 * 13 12 11 29 29 H 0.97002 * 120.00205 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47116 * 59.99334 * 9 7 2 31 31 H 1.09000 * 109.46710 * 299.99728 * 9 7 2 32 32 H 1.07994 * 126.06234 * 359.97438 * 11 10 9 33 33 H 1.07999 * 126.06485 * 180.02562 * 12 11 10 34 34 H 0.96997 * 119.99673 * 180.02562 * 14 13 12 35 35 H 0.96997 * 119.99800 * 359.97438 * 19 17 15 36 36 H 1.09002 * 109.51970 * 297.49711 * 23 21 20 37 37 H 1.08999 * 109.52292 * 57.68177 * 23 21 20 38 38 H 1.09000 * 109.54402 * 183.14965 * 24 23 21 39 39 H 1.09003 * 109.61773 * 62.93091 * 24 23 21 40 40 H 1.08998 * 109.52258 * 297.08278 * 25 24 23 41 41 H 1.08995 * 109.57559 * 176.91992 * 25 24 23 42 42 H 1.09007 * 109.48045 * 182.41095 * 26 25 24 43 43 H 1.08999 * 109.48631 * 62.37338 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 2.2419 -4.6235 0.8911 12 6 3.2607 -5.4431 0.5467 13 6 3.8703 -4.9135 -0.6026 14 7 4.9648 -5.4626 -1.2799 15 6 5.5290 -6.6032 -0.8357 16 8 5.0874 -7.1543 0.1515 17 6 6.6974 -7.1889 -1.5583 18 8 7.1385 -6.6381 -2.5456 19 7 7.2619 -8.3292 -1.1138 20 8 8.3694 -8.8848 -1.7992 21 6 8.8663 -10.0922 -1.2183 22 1 8.0488 -10.6254 -0.7331 23 6 9.4727 -10.9738 -2.3132 24 6 10.0566 -12.2379 -1.6750 25 6 11.0878 -11.8331 -0.6171 26 6 10.4190 -10.9184 0.4123 27 8 9.8704 -9.7777 -0.2512 28 7 3.2329 -3.8138 -0.9307 29 1 -0.4850 0.8400 0.0004 30 1 0.6248 -2.5563 -0.8919 31 1 0.6242 -2.5575 0.8880 32 1 1.5777 -4.7540 1.7325 33 1 3.5537 -6.3449 1.0636 34 1 5.3178 -5.0219 -2.0686 35 1 6.9095 -8.7692 -0.3244 36 1 8.6981 -11.2510 -3.0282 37 1 10.2634 -10.4259 -2.8257 38 1 10.5394 -12.8438 -2.4417 39 1 9.2585 -12.8127 -1.2051 40 1 11.9111 -11.3025 -1.0953 41 1 11.4692 -12.7244 -0.1190 42 1 11.1585 -10.5925 1.1438 43 1 9.6218 -11.4626 0.9186 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326117040.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:52 Heat of formation + Delta-G solvation = -21.329651 kcal Electronic energy + Delta-G solvation = -27948.258429 eV Core-core repulsion = 23612.309287 eV Total energy + Delta-G solvation = -4335.949141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.12654 -40.34171 -39.95653 -38.54313 -37.18018 -35.13018 -34.33378 -33.41554 -32.78185 -31.08237 -30.53162 -29.46025 -27.07065 -25.62114 -25.03536 -23.97359 -22.93566 -21.68676 -21.02296 -20.40263 -19.84755 -19.15887 -18.00865 -17.34387 -16.96685 -16.64805 -16.58686 -16.31746 -16.08994 -15.42349 -15.21651 -15.06604 -14.65848 -14.58182 -14.21851 -13.95200 -13.81366 -13.67399 -13.38440 -13.00519 -12.96961 -12.45344 -12.32039 -12.01519 -11.93667 -11.76924 -11.67430 -11.61724 -11.07790 -10.99920 -10.89276 -10.59105 -10.28325 -10.22496 -10.07107 -9.69097 -9.56235 -9.52478 -8.65442 -8.27803 -7.62981 -6.26587 -4.31856 0.95310 1.09702 2.58855 2.64477 2.95128 3.02336 3.24241 3.30159 3.35175 3.59714 3.61747 3.91662 4.04472 4.12086 4.22185 4.25606 4.27678 4.32794 4.48578 4.74484 4.92040 5.05767 5.08910 5.13162 5.27053 5.37800 5.38997 5.40438 5.61175 5.66142 6.02836 6.07778 6.19586 6.35435 6.52912 6.65369 6.77312 6.99994 7.16798 7.29637 7.58528 7.67426 7.80495 7.86226 7.94629 8.49812 8.76581 9.34280 10.82204 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028966 B = 0.001740 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.429667 B =16087.352113 C =16380.568721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.070 0.930 9 C 0.257 3.743 10 N -0.313 5.313 11 C 0.055 3.945 12 C -0.285 4.285 13 C 0.250 3.750 14 N -0.592 5.592 15 C 0.530 3.470 16 O -0.497 6.497 17 C 0.528 3.472 18 O -0.493 6.493 19 N -0.568 5.568 20 O -0.110 6.110 21 C 0.228 3.772 22 H 0.076 0.924 23 C -0.139 4.139 24 C -0.119 4.119 25 C -0.162 4.162 26 C 0.069 3.931 27 O -0.397 6.397 28 N -0.291 5.291 29 H 0.268 0.732 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.426 0.574 35 H 0.423 0.577 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.400 -26.660 0.256 31.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.569 4.569 8 H 0.088 0.912 9 C 0.139 3.861 10 N -0.095 5.095 11 C -0.096 4.096 12 C -0.316 4.316 13 C -0.003 4.003 14 N -0.240 5.240 15 C 0.309 3.691 16 O -0.370 6.370 17 C 0.309 3.691 18 O -0.365 6.365 19 N -0.273 5.273 20 O -0.114 6.114 21 C 0.131 3.869 22 H 0.093 0.907 23 C -0.178 4.178 24 C -0.157 4.157 25 C -0.200 4.200 26 C -0.007 4.007 27 O -0.318 6.318 28 N -0.123 5.123 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.188 0.812 33 H 0.179 0.821 34 H 0.263 0.737 35 H 0.266 0.734 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.120 0.880 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 17.227 -25.181 -0.729 30.519 hybrid contribution 0.514 -0.126 0.615 0.811 sum 17.741 -25.307 -0.115 30.906 Atomic orbital electron populations 1.69914 1.06043 1.27700 1.49619 1.24937 0.94989 0.99578 0.94487 0.86313 0.79655 0.82034 0.78434 1.20284 1.20979 1.19687 1.21251 0.94049 0.89317 1.52306 0.91208 1.19817 0.85547 0.81209 0.99486 1.49191 1.22826 1.19602 1.17872 1.22586 1.00193 0.90014 0.96768 1.21509 1.02096 1.06485 1.01539 1.18950 0.91366 0.94917 0.95037 1.41835 1.28737 1.23209 1.30267 1.19240 0.83484 0.81633 0.84775 1.90731 1.61707 1.59903 1.24658 1.19889 0.83934 0.79995 0.85328 1.90832 1.61876 1.59076 1.24718 1.47087 1.25184 1.24890 1.30103 1.90695 1.37637 1.42384 1.40640 1.23467 0.89699 0.84097 0.89662 0.90695 1.22082 1.02489 0.95649 0.97560 1.21606 0.98836 0.96353 0.98865 1.22276 0.99326 1.00541 0.97861 1.22609 0.97551 0.86505 0.94020 1.87906 1.56043 1.33062 1.54796 1.77423 1.03213 1.15688 1.15942 0.92282 0.93498 0.92304 0.81153 0.82094 0.73658 0.73436 0.89343 0.89397 0.90167 0.91245 0.90481 0.90147 0.88022 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.59 9.23 -34.44 -0.32 -14.90 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.26 6.36 6.26 -5.19 -0.03 6.33 16 10 N -0.31 -7.03 3.67 -62.57 -0.23 -7.26 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.83 16 12 C -0.29 -5.27 9.60 -39.82 -0.38 -5.65 16 13 C 0.25 4.87 8.10 -154.55 -1.25 3.62 16 14 N -0.59 -9.50 5.43 -11.58 -0.06 -9.56 16 15 C 0.53 7.63 7.85 -11.63 -0.09 7.54 16 16 O -0.50 -7.48 13.60 5.47 0.07 -7.41 16 17 C 0.53 7.13 8.03 -11.63 -0.09 7.03 16 18 O -0.49 -7.94 16.88 -12.69 -0.21 -8.16 16 19 N -0.57 -6.31 6.37 30.88 0.20 -6.11 16 20 O -0.11 -1.27 11.00 -42.01 -0.46 -1.73 16 21 C 0.23 1.80 3.45 37.21 0.13 1.92 16 22 H 0.08 0.43 7.83 -51.93 -0.41 0.02 16 23 C -0.14 -0.80 5.79 -26.59 -0.15 -0.96 16 24 C -0.12 -0.44 6.03 -26.55 -0.16 -0.60 16 25 C -0.16 -0.63 6.14 -26.59 -0.16 -0.79 16 26 C 0.07 0.36 6.84 37.20 0.25 0.61 16 27 O -0.40 -3.58 10.66 -59.04 -0.63 -4.21 16 28 N -0.29 -6.58 12.42 31.41 0.39 -6.19 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.17 2.55 8.06 -52.49 -0.42 2.12 16 33 H 0.16 2.75 5.91 -52.49 -0.31 2.44 16 34 H 0.43 6.28 8.29 -40.82 -0.34 5.94 16 35 H 0.42 3.65 7.83 -40.82 -0.32 3.33 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 42 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 373.77 15.07 5.63 5.63 Total: -1.00 -33.60 373.77 -7.71 -41.32 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.57 Total: 5.07 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -2.56 Total: 6.62 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 1.03 Total: -53.42 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -1.23 Total: -21.51 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.60 -7.71 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326117040.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.988 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds