Wall clock time and date at job start Tue Mar 31 2020 20:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 120.00001 * 2 1 4 4 H 1.48495 * 109.46895 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47031 * 300.00210 * 3 2 1 6 6 H 1.48504 * 109.46896 * 60.00058 * 3 2 1 7 7 C 1.38812 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99644 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.48871 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11666 * 155.35556 * 10 9 7 12 12 C 1.53001 * 113.73697 * 269.15137 * 11 10 9 13 13 C 1.53007 * 109.47078 * 172.50981 * 12 11 10 14 14 O 1.42900 * 109.47046 * 175.18600 * 13 12 11 15 15 N 1.46498 * 113.74771 * 137.95061 * 11 10 9 16 16 C 1.34771 * 119.99977 * 74.85670 * 15 11 10 17 17 O 1.21280 * 119.99906 * 355.07886 * 16 15 11 18 18 C 1.50705 * 120.00126 * 175.08222 * 16 15 11 19 19 O 1.42898 * 109.47270 * 179.97438 * 18 16 15 20 20 C 1.35953 * 117.00093 * 179.97438 * 19 18 16 21 21 C 1.38661 * 120.05954 * 0.02562 * 20 19 18 22 22 C 1.38183 * 119.96681 * 180.02562 * 21 20 19 23 23 C 1.38264 * 120.09679 * 359.97438 * 22 21 20 24 24 C 1.38251 * 120.12377 * 0.02562 * 23 22 21 25 25 C 1.38332 * 120.03128 * 359.97438 * 24 23 22 26 26 F 1.35107 * 120.04729 * 179.97438 * 25 24 23 27 27 C 1.47811 * 134.45722 * 359.86292 * 9 7 2 28 28 H 0.96993 * 119.99754 * 359.97438 * 1 2 3 29 29 H 1.08993 * 113.77555 * 41.05221 * 10 9 7 30 30 H 1.09008 * 113.86618 * 269.66011 * 10 9 7 31 31 H 1.08997 * 109.46981 * 292.50912 * 12 11 10 32 32 H 1.08998 * 109.47415 * 52.51207 * 12 11 10 33 33 H 1.08993 * 109.47100 * 295.19134 * 13 12 11 34 34 H 1.09001 * 109.46687 * 55.19182 * 13 12 11 35 35 H 0.96701 * 113.99691 * 180.02562 * 14 13 12 36 36 H 0.97000 * 119.99567 * 254.86454 * 15 11 10 37 37 H 1.09003 * 109.46422 * 59.99765 * 18 16 15 38 38 H 1.08994 * 109.46681 * 300.00430 * 18 16 15 39 39 H 1.08000 * 120.01910 * 359.97438 * 21 20 19 40 40 H 1.08004 * 119.94827 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.93637 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.98630 * 179.72226 * 24 23 22 43 43 H 1.09000 * 113.76519 * 90.38332 * 27 9 7 44 44 H 1.09002 * 113.83757 * 318.91886 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7202 -3.8101 -0.0019 11 6 0.3466 -4.0833 0.6373 12 6 0.3631 -4.0572 2.1670 13 6 -1.0701 -4.1523 2.6942 14 8 -1.0482 -4.2409 4.1203 15 7 -0.3334 -5.2614 0.0935 16 6 0.0808 -6.4970 0.4371 17 8 1.0705 -6.6355 1.1242 18 6 -0.6858 -7.7065 -0.0326 19 8 -0.0539 -8.8908 0.4574 20 6 -0.6242 -10.0786 0.1222 21 6 -1.7674 -10.1033 -0.6622 22 6 -2.3457 -11.3116 -1.0014 23 6 -1.7859 -12.4963 -0.5601 24 6 -0.6462 -12.4762 0.2221 25 6 -0.0629 -11.2695 0.5647 26 9 1.0507 -11.2495 1.3296 27 6 -0.1058 -2.7570 0.0001 28 1 -0.4849 0.8400 0.0004 29 1 2.5620 -4.0327 0.6537 30 1 1.8332 -4.2362 -0.9989 31 1 0.9436 -4.9016 2.5385 32 1 0.8153 -3.1266 2.5098 33 1 -1.6273 -3.2650 2.3938 34 1 -1.5505 -5.0398 2.2824 35 1 -1.9246 -4.3046 4.5239 36 1 -1.0818 -5.1521 -0.5139 37 1 -0.6999 -7.7269 -1.1224 38 1 -1.7077 -7.6573 0.3431 39 1 -2.2060 -9.1787 -1.0072 40 1 -3.2359 -11.3305 -1.6127 41 1 -2.2399 -13.4392 -0.8271 42 1 -0.2133 -13.4027 0.5693 43 1 -0.5311 -2.8713 -0.9969 44 1 -0.7189 -2.1405 0.6575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329718249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:40 Heat of formation + Delta-G solvation = -75.685663 kcal Electronic energy + Delta-G solvation = -29197.838930 eV Core-core repulsion = 24839.612774 eV Total energy + Delta-G solvation = -4358.226156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.93354 -40.60694 -39.82945 -38.16793 -37.23666 -36.39644 -33.75700 -32.08493 -31.07369 -30.74023 -30.25567 -28.36185 -26.97020 -25.11440 -23.68939 -23.05813 -22.75023 -21.72968 -20.39595 -18.98878 -18.65871 -17.49934 -17.25452 -17.02703 -16.83501 -16.70278 -16.41282 -15.61635 -15.52234 -15.22583 -14.83380 -14.77667 -14.67085 -14.24002 -14.15885 -13.72458 -13.59677 -13.28824 -12.95891 -12.68008 -12.50655 -12.06882 -11.95504 -11.79588 -11.64446 -11.53155 -11.40140 -11.09102 -10.96864 -10.81557 -10.73821 -10.17081 -10.04457 -9.74959 -9.62833 -9.32515 -9.24569 -8.94390 -8.67886 -8.53200 -6.97913 -5.85074 -3.16829 0.75201 0.89288 2.37692 2.68514 3.21148 3.36434 3.42397 3.44728 3.53794 3.95428 4.31717 4.40238 4.44290 4.45343 4.61206 4.74344 4.79521 4.84179 4.85915 5.09979 5.15660 5.19073 5.43478 5.50202 5.58221 5.67063 5.69420 5.76711 5.79596 5.90486 5.99118 6.24191 6.26413 6.39581 6.44541 6.59546 6.73378 6.78776 6.92579 7.05412 7.23833 7.43348 7.67939 7.88638 7.89626 8.37110 8.97390 9.63229 10.48461 11.32746 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021133 B = 0.002352 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.649190 B =11899.740634 C =12168.341113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.007 4.007 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.218 4.218 8 H 0.083 0.917 9 N -0.604 5.604 10 C 0.123 3.877 11 C 0.127 3.873 12 C -0.099 4.099 13 C 0.084 3.916 14 O -0.574 6.574 15 N -0.712 5.712 16 C 0.512 3.488 17 O -0.506 6.506 18 C 0.038 3.962 19 O -0.279 6.279 20 C 0.100 3.900 21 C -0.186 4.186 22 C -0.089 4.089 23 C -0.132 4.132 24 C -0.117 4.117 25 C 0.072 3.928 26 F -0.129 7.129 27 C 0.167 3.833 28 H 0.254 0.746 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.033 0.967 35 H 0.372 0.628 36 H 0.398 0.602 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.142 0.858 43 H 0.031 0.969 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.695 -22.486 -2.222 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.346 4.346 8 H 0.101 0.899 9 N -0.330 5.330 10 C -0.004 4.004 11 C 0.041 3.959 12 C -0.137 4.137 13 C 0.006 3.994 14 O -0.378 6.378 15 N -0.365 5.365 16 C 0.295 3.705 17 O -0.380 6.380 18 C -0.041 4.041 19 O -0.191 6.191 20 C 0.053 3.947 21 C -0.205 4.205 22 C -0.108 4.108 23 C -0.151 4.151 24 C -0.136 4.136 25 C 0.052 3.948 26 F -0.107 7.107 27 C 0.041 3.959 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.217 0.783 36 H 0.232 0.768 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.160 0.840 43 H 0.049 0.951 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.033 -22.129 -1.652 23.959 hybrid contribution -0.656 0.983 -0.533 1.296 sum -9.689 -21.147 -2.186 23.363 Atomic orbital electron populations 1.69787 1.05022 1.25392 1.56823 1.24778 0.95739 0.97594 1.02261 0.86009 0.78844 0.83460 0.77252 1.20373 1.21745 1.21608 1.19057 0.90376 0.81450 1.43695 0.89874 1.45692 1.01815 0.99517 1.86009 1.22875 0.94724 0.85759 0.97022 1.23040 0.95488 0.83918 0.93471 1.21363 0.95746 1.04657 0.91944 1.22111 0.98282 0.98909 0.80101 1.86510 1.33452 1.97264 1.20577 1.46075 1.36449 1.04875 1.49124 1.19873 0.85415 0.83826 0.81380 1.90760 1.24812 1.85707 1.36734 1.22651 0.97300 0.83744 1.00396 1.86261 1.51092 1.11029 1.70692 1.19129 0.93585 0.85401 0.96576 1.21222 0.96659 1.00205 1.02371 1.21030 0.99555 0.91528 0.98656 1.20938 0.96072 0.98821 0.99235 1.21052 0.96924 0.96133 0.99471 1.17038 0.87477 0.91815 0.98502 1.91544 1.49154 1.97166 1.72865 1.22592 0.89096 0.87253 0.96955 0.93617 0.92934 0.94540 0.90139 0.89074 0.93254 0.94837 0.78274 0.76759 0.88898 0.88945 0.84324 0.84956 0.84845 0.84024 0.95095 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.29 11.39 55.49 0.63 -25.66 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.22 -6.03 10.70 -15.06 -0.16 -6.19 16 8 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 9 N -0.60 -15.10 3.55 -177.50 -0.63 -15.73 16 10 C 0.12 2.63 8.04 -2.97 -0.02 2.61 16 11 C 0.13 2.33 0.68 -134.04 -0.09 2.24 16 12 C -0.10 -1.90 4.67 -26.73 -0.12 -2.03 16 13 C 0.08 1.35 6.86 37.16 0.25 1.61 16 14 O -0.57 -9.24 13.66 -35.23 -0.48 -9.72 16 15 N -0.71 -9.95 4.52 -49.08 -0.22 -10.17 16 16 C 0.51 7.58 7.47 -10.99 -0.08 7.50 16 17 O -0.51 -9.98 14.68 -14.35 -0.21 -10.19 16 18 C 0.04 0.40 5.22 36.01 0.19 0.59 16 19 O -0.28 -3.87 9.53 -39.50 -0.38 -4.24 16 20 C 0.10 1.14 6.69 -39.18 -0.26 0.88 16 21 C -0.19 -1.49 9.04 -39.45 -0.36 -1.85 16 22 C -0.09 -0.58 10.04 -39.59 -0.40 -0.97 16 23 C -0.13 -0.85 10.04 -39.57 -0.40 -1.25 16 24 C -0.12 -0.96 10.02 -39.54 -0.40 -1.36 16 25 C 0.07 0.83 7.31 -39.30 -0.29 0.54 16 26 F -0.13 -1.81 17.11 2.25 0.04 -1.77 16 27 C 0.17 3.62 6.69 -2.85 -0.02 3.60 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.05 1.17 8.10 -51.93 -0.42 0.75 16 30 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.08 1.67 6.54 -51.93 -0.34 1.33 16 32 H 0.09 2.02 8.02 -51.93 -0.42 1.61 16 33 H 0.05 0.80 7.61 -51.93 -0.40 0.40 16 34 H 0.03 0.48 7.43 -51.93 -0.39 0.09 16 35 H 0.37 3.94 9.12 45.56 0.42 4.36 16 36 H 0.40 4.16 8.67 -40.82 -0.35 3.80 16 37 H 0.09 0.71 7.66 -51.93 -0.40 0.31 16 38 H 0.09 0.69 7.66 -51.93 -0.40 0.30 16 39 H 0.14 0.78 6.30 -52.49 -0.33 0.45 16 40 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 41 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.08 1.98 6.59 -51.93 -0.34 1.64 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -36.00 374.58 -7.90 -43.90 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.02 Total: 5.44 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -2.25 Total: 5.62 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.22 Total: -51.56 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -1.07 Total: -24.16 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.00 -7.90 -43.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329718249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.785 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds