Wall clock time and date at job start Tue Mar 31 2020 20:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 120.00001 * 2 1 4 4 H 1.48495 * 109.46895 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47031 * 300.00210 * 3 2 1 6 6 H 1.48504 * 109.46896 * 60.00058 * 3 2 1 7 7 C 1.38812 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99644 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00082 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.48871 * 180.02562 * 9 7 2 11 11 C 1.53947 * 86.11666 * 155.35556 * 10 9 7 12 12 C 1.53001 * 113.73697 * 269.15137 * 11 10 9 13 13 C 1.53007 * 109.47078 * 172.50981 * 12 11 10 14 14 O 1.42900 * 109.47046 * 175.18600 * 13 12 11 15 15 N 1.46498 * 113.74771 * 137.95061 * 11 10 9 16 16 C 1.34771 * 119.99977 * 74.85670 * 15 11 10 17 17 O 1.21280 * 119.99906 * 355.07886 * 16 15 11 18 18 C 1.50705 * 120.00126 * 175.08222 * 16 15 11 19 19 O 1.42898 * 109.47270 * 179.97438 * 18 16 15 20 20 C 1.35953 * 117.00093 * 179.97438 * 19 18 16 21 21 C 1.38661 * 120.05954 * 0.02562 * 20 19 18 22 22 C 1.38183 * 119.96681 * 180.02562 * 21 20 19 23 23 C 1.38264 * 120.09679 * 359.97438 * 22 21 20 24 24 C 1.38251 * 120.12377 * 0.02562 * 23 22 21 25 25 C 1.38332 * 120.03128 * 359.97438 * 24 23 22 26 26 F 1.35107 * 120.04729 * 179.97438 * 25 24 23 27 27 C 1.47811 * 134.45722 * 359.86292 * 9 7 2 28 28 H 0.96993 * 119.99754 * 359.97438 * 1 2 3 29 29 H 1.08993 * 113.77555 * 41.05221 * 10 9 7 30 30 H 1.09008 * 113.86618 * 269.66011 * 10 9 7 31 31 H 1.08997 * 109.46981 * 292.50912 * 12 11 10 32 32 H 1.08998 * 109.47415 * 52.51207 * 12 11 10 33 33 H 1.08993 * 109.47100 * 295.19134 * 13 12 11 34 34 H 1.09001 * 109.46687 * 55.19182 * 13 12 11 35 35 H 0.96701 * 113.99691 * 180.02562 * 14 13 12 36 36 H 0.97000 * 119.99567 * 254.86454 * 15 11 10 37 37 H 1.09003 * 109.46422 * 59.99765 * 18 16 15 38 38 H 1.08994 * 109.46681 * 300.00430 * 18 16 15 39 39 H 1.08000 * 120.01910 * 359.97438 * 21 20 19 40 40 H 1.08004 * 119.94827 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.93637 * 180.02562 * 23 22 21 42 42 H 1.07999 * 119.98630 * 179.72226 * 24 23 22 43 43 H 1.09000 * 113.76519 * 90.38332 * 27 9 7 44 44 H 1.09002 * 113.83757 * 318.91886 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3881 -0.0016 10 6 1.7202 -3.8101 -0.0019 11 6 0.3466 -4.0833 0.6373 12 6 0.3631 -4.0572 2.1670 13 6 -1.0701 -4.1523 2.6942 14 8 -1.0482 -4.2409 4.1203 15 7 -0.3334 -5.2614 0.0935 16 6 0.0808 -6.4970 0.4371 17 8 1.0705 -6.6355 1.1242 18 6 -0.6858 -7.7065 -0.0326 19 8 -0.0539 -8.8908 0.4574 20 6 -0.6242 -10.0786 0.1222 21 6 -1.7674 -10.1033 -0.6622 22 6 -2.3457 -11.3116 -1.0014 23 6 -1.7859 -12.4963 -0.5601 24 6 -0.6462 -12.4762 0.2221 25 6 -0.0629 -11.2695 0.5647 26 9 1.0507 -11.2495 1.3296 27 6 -0.1058 -2.7570 0.0001 28 1 -0.4849 0.8400 0.0004 29 1 2.5620 -4.0327 0.6537 30 1 1.8332 -4.2362 -0.9989 31 1 0.9436 -4.9016 2.5385 32 1 0.8153 -3.1266 2.5098 33 1 -1.6273 -3.2650 2.3938 34 1 -1.5505 -5.0398 2.2824 35 1 -1.9246 -4.3046 4.5239 36 1 -1.0818 -5.1521 -0.5139 37 1 -0.6999 -7.7269 -1.1224 38 1 -1.7077 -7.6573 0.3431 39 1 -2.2060 -9.1787 -1.0072 40 1 -3.2359 -11.3305 -1.6127 41 1 -2.2399 -13.4392 -0.8271 42 1 -0.2133 -13.4027 0.5693 43 1 -0.5311 -2.8713 -0.9969 44 1 -0.7189 -2.1405 0.6575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329718249.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:39 Heat of formation + Delta-G solvation = -102.882644 kcal Electronic energy + Delta-G solvation = -29199.018280 eV Core-core repulsion = 24839.612774 eV Total energy + Delta-G solvation = -4359.405506 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.81801 -41.71108 -40.91488 -39.39487 -38.17225 -37.73077 -35.32705 -33.88999 -32.12676 -31.64186 -31.16707 -29.44388 -28.65665 -26.86989 -25.15490 -23.94413 -23.46413 -23.24956 -21.70734 -20.31191 -19.55690 -18.80460 -18.60479 -18.21076 -18.01258 -17.56077 -17.35619 -17.03843 -16.69732 -16.50071 -16.13122 -15.83157 -15.76781 -15.43842 -15.32148 -15.23145 -14.93216 -14.43335 -14.13714 -13.73519 -13.66265 -13.36777 -13.33862 -13.19472 -12.89784 -12.82710 -12.65078 -12.60522 -12.28651 -12.12972 -12.12590 -12.01063 -11.77006 -11.48446 -11.03681 -10.90914 -10.65316 -10.11912 -9.91591 -9.22729 -8.97770 -7.95135 -5.27569 0.15753 0.28468 1.42419 1.46413 1.47266 1.53852 1.56513 2.40955 2.58712 2.63945 3.11951 3.23903 3.28791 3.34464 3.59862 3.60307 3.83385 3.94669 4.05458 4.09682 4.12981 4.23991 4.31817 4.32158 4.37009 4.44566 4.54437 4.67560 4.70137 4.81685 4.97758 5.01185 5.11905 5.12454 5.14587 5.20515 5.29190 5.46017 5.46681 5.63943 5.71314 5.88234 6.23217 6.57239 6.89577 6.89740 7.23963 7.54913 8.47697 9.21975 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021133 B = 0.002352 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.649190 B =11899.740634 C =12168.341113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.977 3.023 4 H -0.272 1.272 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.236 4.236 8 H 0.077 0.923 9 N -0.632 5.632 10 C 0.118 3.882 11 C 0.158 3.842 12 C -0.094 4.094 13 C 0.093 3.907 14 O -0.594 6.594 15 N -0.696 5.696 16 C 0.510 3.490 17 O -0.562 6.562 18 C 0.044 3.956 19 O -0.321 6.321 20 C 0.074 3.926 21 C -0.182 4.182 22 C -0.082 4.082 23 C -0.125 4.125 24 C -0.119 4.119 25 C 0.025 3.975 26 F -0.157 7.157 27 C 0.175 3.825 28 H 0.252 0.748 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.397 0.603 36 H 0.421 0.579 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.156 0.844 43 H 0.043 0.957 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.672 -24.182 -3.925 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.251 4.251 3 Si 0.805 3.195 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.364 4.364 8 H 0.095 0.905 9 N -0.359 5.359 10 C -0.008 4.008 11 C 0.070 3.930 12 C -0.132 4.132 13 C 0.015 3.985 14 O -0.402 6.402 15 N -0.351 5.351 16 C 0.296 3.704 17 O -0.439 6.439 18 C -0.034 4.034 19 O -0.234 6.234 20 C 0.028 3.972 21 C -0.201 4.201 22 C -0.099 4.099 23 C -0.143 4.143 24 C -0.138 4.138 25 C 0.006 3.994 26 F -0.136 7.136 27 C 0.049 3.951 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.246 0.754 36 H 0.259 0.741 37 H 0.147 0.853 38 H 0.150 0.850 39 H 0.185 0.815 40 H 0.187 0.813 41 H 0.184 0.816 42 H 0.173 0.827 43 H 0.061 0.939 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.066 -23.866 -3.379 26.955 hybrid contribution 0.237 1.376 -0.014 1.396 sum -11.830 -22.489 -3.394 25.637 Atomic orbital electron populations 1.69921 1.05991 1.25808 1.57644 1.25520 0.96701 1.00398 1.02466 0.85044 0.78019 0.79524 0.76918 1.19649 1.21421 1.21746 1.19313 0.90618 0.82985 1.43483 0.90509 1.45962 1.03580 1.00055 1.86298 1.22978 0.96029 0.84364 0.97420 1.22227 0.93450 0.84602 0.92677 1.21217 0.97721 1.01683 0.92620 1.21961 0.95820 1.00216 0.80481 1.86451 1.36001 1.97314 1.20471 1.45721 1.36628 1.03553 1.49221 1.20685 0.84787 0.84861 0.80029 1.90753 1.27455 1.86502 1.39223 1.22737 0.97496 0.80781 1.02339 1.86180 1.52859 1.12426 1.71980 1.19403 0.95152 0.84278 0.98347 1.21585 0.95196 1.02235 1.01056 1.21533 1.00029 0.90700 0.97683 1.21404 0.94825 1.00567 0.97527 1.21337 0.97459 0.95489 0.99467 1.17668 0.87884 0.93625 1.00245 1.91456 1.50831 1.97389 1.73960 1.22484 0.87260 0.88195 0.97136 0.93900 0.94726 0.93456 0.91923 0.92991 0.93103 0.92044 0.75361 0.74056 0.85283 0.85032 0.81531 0.81349 0.81582 0.82682 0.93949 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.51 11.39 21.65 0.25 -54.27 16 2 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 3 Si 0.98 45.61 29.55 68.60 2.03 47.64 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.24 -13.36 10.70 84.03 0.90 -12.46 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 9 N -0.63 -32.45 3.55 -715.50 -2.54 -34.99 16 10 C 0.12 5.21 8.04 86.49 0.70 5.91 16 11 C 0.16 5.85 0.68 5.36 0.00 5.85 16 12 C -0.09 -3.72 4.67 30.60 0.14 -3.58 16 13 C 0.09 2.93 6.86 71.98 0.49 3.42 16 14 O -0.59 -18.70 13.66 -148.98 -2.04 -20.74 16 15 N -0.70 -18.23 4.52 -427.57 -1.93 -20.17 16 16 C 0.51 14.47 7.47 87.66 0.65 15.13 16 17 O -0.56 -22.63 14.68 16.00 0.23 -22.39 16 18 C 0.04 0.80 5.22 71.24 0.37 1.17 16 19 O -0.32 -8.70 9.53 -73.99 -0.71 -9.41 16 20 C 0.07 1.61 6.69 22.53 0.15 1.76 16 21 C -0.18 -2.24 9.04 22.36 0.20 -2.04 16 22 C -0.08 -0.67 10.04 22.26 0.22 -0.44 16 23 C -0.13 -1.14 10.04 22.28 0.22 -0.92 16 24 C -0.12 -1.79 10.02 22.30 0.22 -1.57 16 25 C 0.03 0.59 7.31 22.45 0.16 0.76 16 26 F -0.16 -4.76 17.11 44.97 0.77 -3.99 16 27 C 0.17 7.60 6.69 86.44 0.58 8.18 16 28 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 29 H 0.03 1.62 8.10 -2.39 -0.02 1.60 16 30 H 0.05 1.98 8.14 -2.38 -0.02 1.97 16 31 H 0.06 2.72 6.54 -2.39 -0.02 2.71 16 32 H 0.05 2.44 8.02 -2.39 -0.02 2.42 16 33 H 0.05 1.60 7.61 -2.39 -0.02 1.58 16 34 H 0.06 1.60 7.43 -2.39 -0.02 1.58 16 35 H 0.40 7.73 9.12 -74.06 -0.68 7.06 16 36 H 0.42 7.39 8.67 -92.71 -0.80 6.58 16 37 H 0.13 1.41 7.66 -2.39 -0.02 1.39 16 38 H 0.13 1.36 7.66 -2.39 -0.02 1.34 16 39 H 0.17 0.97 6.30 -2.91 -0.02 0.95 16 40 H 0.17 0.20 8.06 -2.91 -0.02 0.17 16 41 H 0.17 0.42 8.06 -2.91 -0.02 0.39 16 42 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 43 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.06 2.93 6.59 -2.39 -0.02 2.91 16 Total: -1.00 -84.27 374.58 1.14 -83.13 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -0.42 Total: 16.75 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: 5.49 Total: 18.42 kcal Atomic # 7 Polarization: -105.20 SS G_CDS: -4.23 Total: -109.42 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -2.51 Total: -52.54 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.77 Total: -3.99 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -84.27 1.14 -83.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329718249.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.749 kcal (2) G-P(sol) polarization free energy of solvation -84.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds