Wall clock time and date at job start Tue Mar 31 2020 20:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00541 * 2 1 4 4 H 1.48499 * 109.47166 * 270.00428 * 3 2 1 5 5 H 1.48504 * 109.46954 * 30.00039 * 3 2 1 6 6 H 1.48496 * 109.47264 * 149.99804 * 3 2 1 7 7 C 1.37882 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99691 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99936 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.34769 * 120.00440 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99594 * 359.97438 * 11 10 9 13 13 C 1.50695 * 120.00795 * 179.97438 * 11 10 9 14 14 O 1.45194 * 109.47914 * 179.97438 * 13 11 10 15 15 C 1.34750 * 117.00242 * 180.02562 * 14 13 11 16 16 O 1.21512 * 120.00088 * 359.97438 * 15 14 13 17 17 C 1.47383 * 119.99921 * 180.02562 * 15 14 13 18 18 C 1.36667 * 125.78166 * 180.30487 * 17 15 14 19 19 N 1.34786 * 106.83763 * 180.14906 * 18 17 15 20 20 C 1.46500 * 126.58773 * 179.88840 * 19 18 17 21 21 C 1.53175 * 109.54071 * 274.70714 * 20 19 18 22 22 C 1.53092 * 109.16344 * 176.84833 * 21 20 19 23 23 O 1.42905 * 109.41215 * 302.38824 * 22 21 20 24 24 C 1.42905 * 114.09831 * 61.16158 * 23 22 21 25 25 C 1.53098 * 109.41155 * 298.83847 * 24 23 22 26 26 N 1.40203 * 106.82476 * 359.61816 * 19 18 17 27 27 N 1.28756 * 108.38749 * 0.24577 * 26 19 18 28 28 H 0.97003 * 119.99932 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47339 * 60.00173 * 9 7 2 30 30 H 1.09000 * 109.47494 * 299.99993 * 9 7 2 31 31 H 0.97001 * 119.99783 * 359.97438 * 10 9 7 32 32 H 1.09003 * 109.46800 * 59.99561 * 13 11 10 33 33 H 1.09000 * 109.46583 * 300.00269 * 13 11 10 34 34 H 1.08000 * 126.58183 * 0.02562 * 18 17 15 35 35 H 1.08996 * 109.54248 * 154.53049 * 20 19 18 36 36 H 1.09004 * 109.52714 * 56.93853 * 21 20 19 37 37 H 1.09001 * 109.57654 * 296.78583 * 21 20 19 38 38 H 1.08997 * 109.48111 * 182.40965 * 22 21 20 39 39 H 1.09000 * 109.48212 * 62.37239 * 22 21 20 40 40 H 1.09000 * 109.47932 * 58.81878 * 24 23 22 41 41 H 1.08993 * 109.48024 * 178.86013 * 24 23 22 42 42 H 1.08996 * 109.52270 * 297.70307 * 25 24 23 43 43 H 1.08995 * 109.57012 * 177.54155 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 1.7535 -4.8834 -0.0011 12 8 0.5611 -5.1049 -0.0011 13 6 2.7326 -6.0289 -0.0016 14 8 2.0067 -7.2863 -0.0015 15 6 2.7405 -8.4165 -0.0015 16 8 3.9540 -8.3530 -0.0020 17 6 2.0713 -9.7296 -0.0019 18 6 2.6963 -10.9450 0.0040 19 7 1.7276 -11.8822 -0.0022 20 6 1.9180 -13.3348 -0.0015 21 6 2.1107 -13.8269 -1.4392 22 6 2.3870 -15.3326 -1.4222 23 8 3.5384 -15.5951 -0.6176 24 6 3.3983 -15.1992 0.7484 25 6 3.1626 -13.6881 0.8185 26 7 0.5028 -11.1999 -0.0030 27 7 0.7426 -9.9349 -0.0029 28 1 -0.4850 0.8401 0.0004 29 1 0.6238 -2.5567 -0.8903 30 1 0.6245 -2.5571 0.8897 31 1 3.1565 -3.4356 -0.0009 32 1 3.3594 -5.9716 0.8883 33 1 3.3592 -5.9708 -0.8917 34 1 3.7619 -11.1208 0.0102 35 1 1.0432 -13.8169 0.4347 36 1 2.9546 -13.3067 -1.8923 37 1 1.2080 -13.6287 -2.0172 38 1 2.5673 -15.6805 -2.4393 39 1 1.5259 -15.8555 -1.0062 40 1 2.5504 -15.7204 1.1927 41 1 4.3071 -15.4510 1.2949 42 1 4.0278 -13.1652 0.4111 43 1 3.0119 -13.3899 1.8560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330012862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:29 Heat of formation + Delta-G solvation = -97.018409 kcal Electronic energy + Delta-G solvation = -27764.125353 eV Core-core repulsion = 23424.894101 eV Total energy + Delta-G solvation = -4339.231252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.53026 -41.56847 -40.42439 -40.24643 -37.60845 -36.56527 -36.17926 -34.41329 -32.79678 -32.42833 -32.17099 -30.75562 -28.58992 -26.76082 -25.51659 -24.72805 -24.38397 -23.53450 -22.12428 -21.64741 -21.25617 -19.70658 -19.07953 -18.32407 -17.98218 -17.81900 -17.27096 -17.14968 -16.96956 -16.83602 -16.52965 -16.09072 -15.99001 -15.94310 -15.70213 -14.98355 -14.94223 -14.73217 -14.44034 -14.14643 -13.89945 -13.66580 -13.49275 -13.38331 -12.93029 -12.80428 -12.70895 -12.63905 -12.45476 -12.28879 -12.21983 -12.02472 -11.93633 -11.50321 -11.49205 -11.34645 -10.91466 -10.81093 -10.74313 -10.57817 -9.92505 -8.28598 -6.45578 -0.11888 0.26966 0.76222 1.22441 1.45250 1.47348 1.56333 1.58803 1.77936 2.32454 2.51220 2.88695 3.02489 3.06604 3.09533 3.41813 3.51682 3.65572 3.72369 3.74093 3.80463 4.01544 4.03054 4.07588 4.15394 4.19736 4.37907 4.49294 4.57349 4.64440 4.78129 4.89088 4.96208 5.02397 5.04449 5.11868 5.22199 5.28374 5.42760 5.64059 5.82561 6.18386 6.35120 6.63643 6.77236 6.81014 7.21629 7.37721 8.83632 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.042751 B = 0.001584 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.794679 B =17676.754455 C =18034.623157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.254 1.254 7 C -0.557 4.557 8 H 0.088 0.912 9 C 0.265 3.735 10 N -0.697 5.697 11 C 0.497 3.503 12 O -0.585 6.585 13 C 0.060 3.940 14 O -0.339 6.339 15 C 0.561 3.439 16 O -0.508 6.508 17 C -0.112 4.112 18 C 0.132 3.868 19 N -0.340 5.340 20 C 0.141 3.859 21 C -0.165 4.165 22 C 0.067 3.933 23 O -0.397 6.397 24 C 0.065 3.935 25 C -0.167 4.167 26 N -0.080 5.080 27 N -0.216 5.216 28 H 0.269 0.731 29 H -0.009 1.009 30 H -0.009 1.009 31 H 0.414 0.586 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.246 0.754 35 H 0.128 0.872 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.186 -35.712 0.330 38.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.178 1.178 7 C -0.595 4.595 8 H 0.106 0.894 9 C 0.143 3.857 10 N -0.348 5.348 11 C 0.283 3.717 12 O -0.466 6.466 13 C -0.016 4.016 14 O -0.253 6.253 15 C 0.404 3.596 16 O -0.396 6.396 17 C -0.250 4.250 18 C -0.026 4.026 19 N -0.123 5.123 20 C 0.041 3.959 21 C -0.203 4.203 22 C -0.010 4.010 23 O -0.316 6.316 24 C -0.012 4.012 25 C -0.205 4.205 26 N -0.060 5.060 27 N -0.090 5.090 28 H 0.078 0.922 29 H 0.009 0.991 30 H 0.009 0.991 31 H 0.250 0.750 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.262 0.738 35 H 0.145 0.855 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.131 0.869 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.138 0.862 42 H 0.113 0.887 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.168 -35.958 0.260 37.653 hybrid contribution 0.757 1.559 0.029 1.734 sum 11.925 -34.399 0.289 36.408 Atomic orbital electron populations 1.70146 1.08334 1.28608 1.49859 1.26085 0.95772 1.03970 0.93816 0.85118 0.78472 0.76809 0.78565 1.19633 1.21092 1.17783 1.21622 0.94497 0.90296 1.53042 0.89384 1.18635 0.88640 0.83904 0.94516 1.46000 1.11727 1.04545 1.72574 1.20736 0.89305 0.84830 0.76831 1.90715 1.19166 1.85319 1.51368 1.22867 0.92470 0.78435 1.07830 1.86689 1.40706 1.14504 1.83439 1.19576 0.84585 0.83233 0.72242 1.90855 1.13550 1.87698 1.47478 1.20343 0.90043 0.92682 1.21894 1.23705 0.98832 0.85899 0.94177 1.51060 1.04872 1.09243 1.47172 1.22157 1.02667 0.71716 0.99334 1.22694 1.04260 0.99185 0.94208 1.22665 0.89042 0.91875 0.97418 1.87997 1.39270 1.82937 1.21406 1.22718 1.04519 0.91018 0.82959 1.22759 0.96097 1.00019 1.01671 1.82039 1.03708 0.97265 1.23007 1.74893 1.15331 1.09378 1.09424 0.92243 0.99110 0.99092 0.74965 0.84981 0.85013 0.73802 0.85466 0.90043 0.89685 0.86865 0.90977 0.91079 0.86238 0.88747 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.29 21.45 0.28 -56.23 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.99 42.28 29.54 68.60 2.03 44.31 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.25 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.56 -30.18 9.28 25.60 0.24 -29.94 16 8 H 0.09 4.25 7.60 -2.91 -0.02 4.23 16 9 C 0.27 14.68 5.43 85.63 0.46 15.15 16 10 N -0.70 -29.47 5.55 -466.79 -2.59 -32.06 16 11 C 0.50 20.89 7.91 87.66 0.69 21.58 16 12 O -0.59 -31.42 16.50 15.75 0.26 -31.16 16 13 C 0.06 1.81 5.95 71.23 0.42 2.24 16 14 O -0.34 -11.74 9.76 -50.22 -0.49 -12.23 16 15 C 0.56 15.96 7.96 70.23 0.56 16.52 16 16 O -0.51 -13.63 16.65 19.80 0.33 -13.30 16 17 C -0.11 -2.85 7.02 40.79 0.29 -2.56 16 18 C 0.13 2.01 10.39 83.87 0.87 2.88 16 19 N -0.34 -5.05 3.55 -325.94 -1.16 -6.21 16 20 C 0.14 0.93 3.32 45.11 0.15 1.08 16 21 C -0.16 -0.93 5.74 30.68 0.18 -0.75 16 22 C 0.07 0.24 6.84 72.01 0.49 0.74 16 23 O -0.40 -2.68 10.77 -148.98 -1.60 -4.28 16 24 C 0.06 0.12 6.84 72.01 0.49 0.62 16 25 C -0.17 -0.41 5.13 30.69 0.16 -0.26 16 26 N -0.08 -1.98 13.78 37.02 0.51 -1.47 16 27 N -0.22 -6.62 12.39 -50.03 -0.62 -7.24 16 28 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 29 H -0.01 -0.57 8.14 -2.39 -0.02 -0.58 16 30 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H 0.41 13.85 8.32 -92.71 -0.77 13.07 16 32 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.25 1.57 7.25 -2.91 -0.02 1.55 16 35 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.07 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 42 H 0.09 0.16 7.07 -2.39 -0.02 0.14 16 43 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -85.39 376.63 2.70 -82.69 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 0.29 Total: 9.25 kcal Atomic # 6 Polarization: 22.47 SS G_CDS: 5.47 Total: 27.94 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -3.57 Total: -103.21 kcal Atomic # 8 Polarization: -59.47 SS G_CDS: -1.50 Total: -60.97 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -85.39 2.70 -82.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330012862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.333 kcal (2) G-P(sol) polarization free energy of solvation -85.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds