Wall clock time and date at job start Tue Mar 31 2020 20:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99636 * 2 1 4 4 H 1.48499 * 109.46705 * 240.00016 * 3 2 1 5 5 H 1.48496 * 109.47427 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47257 * 119.99887 * 3 2 1 7 7 C 1.37878 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99498 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00044 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46984 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47042 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47268 * 179.97438 * 11 10 9 13 13 C 1.34780 * 120.00182 * 179.97438 * 12 11 10 14 14 O 1.21345 * 119.99756 * 359.97438 * 13 12 11 15 15 C 1.49452 * 119.99815 * 179.97438 * 13 12 11 16 16 O 1.21344 * 120.00262 * 0.02562 * 15 13 12 17 17 N 1.34778 * 119.99435 * 179.97438 * 15 13 12 18 18 C 1.46505 * 119.99353 * 180.02562 * 17 15 13 19 19 C 1.53008 * 109.46856 * 180.02562 * 18 17 15 20 20 O 1.42895 * 109.47006 * 64.99442 * 19 18 17 21 21 C 1.35951 * 116.99758 * 179.97438 * 20 19 18 22 22 C 1.38708 * 120.03040 * 0.28885 * 21 20 19 23 23 C 1.38147 * 119.96935 * 180.25012 * 22 21 20 24 24 C 1.38455 * 120.02958 * 359.46222 * 23 22 21 25 25 F 1.35101 * 119.97206 * 180.29906 * 24 23 22 26 26 C 1.38452 * 120.06193 * 0.28172 * 24 23 22 27 27 C 1.38156 * 120.03063 * 359.97438 * 26 24 23 28 28 H 0.96994 * 120.00085 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47055 * 60.00075 * 9 7 2 30 30 H 1.09004 * 109.46950 * 300.00343 * 9 7 2 31 31 H 1.09000 * 109.47224 * 59.99746 * 10 9 7 32 32 H 1.08996 * 109.46991 * 299.99793 * 10 9 7 33 33 H 1.09000 * 109.47522 * 59.99678 * 11 10 9 34 34 H 1.09011 * 109.46934 * 299.99580 * 11 10 9 35 35 H 0.97001 * 120.00336 * 359.97438 * 12 11 10 36 36 H 0.96995 * 120.00605 * 0.02562 * 17 15 13 37 37 H 1.08997 * 109.47700 * 60.00502 * 18 17 15 38 38 H 1.08996 * 109.47102 * 299.99743 * 18 17 15 39 39 H 1.09005 * 109.46539 * 304.99929 * 19 18 17 40 40 H 1.08995 * 109.46786 * 185.00066 * 19 18 17 41 41 H 1.07998 * 120.01328 * 0.02562 * 22 21 20 42 42 H 1.08002 * 119.98838 * 179.74746 * 23 22 21 43 43 H 1.07997 * 119.98751 * 179.97438 * 26 24 23 44 44 H 1.07999 * 120.02057 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0017 10 6 2.2455 -3.6620 0.0027 11 6 1.4805 -4.9870 0.0033 12 7 2.4325 -6.1005 0.0037 13 6 1.9833 -7.3713 0.0047 14 8 0.7903 -7.5930 0.0058 15 6 2.9546 -8.5071 0.0045 16 8 4.1476 -8.2854 0.0039 17 7 2.5053 -9.7778 0.0060 18 6 3.4575 -10.8913 0.0064 19 6 2.6925 -12.2164 0.0076 20 8 1.9607 -12.3450 -1.2130 21 6 1.2220 -13.4750 -1.3736 22 6 1.1979 -14.4364 -0.3741 23 6 0.4509 -15.5866 -0.5408 24 6 -0.2822 -15.7747 -1.7001 25 9 -1.0170 -16.8971 -1.8593 26 6 -0.2632 -14.8134 -2.6964 27 6 0.4871 -13.6647 -2.5346 28 1 -0.4850 0.8400 -0.0004 29 1 0.6242 -2.5575 -0.8879 30 1 0.6248 -2.5563 0.8920 31 1 2.8722 -3.6035 0.8926 32 1 2.8721 -3.6051 -0.8873 33 1 0.8541 -5.0454 -0.8868 34 1 0.8536 -5.0443 0.8932 35 1 3.3862 -5.9233 0.0032 36 1 1.5517 -9.9551 0.0069 37 1 4.0847 -10.8328 0.8959 38 1 4.0834 -10.8344 -0.8841 39 1 2.0007 -12.2357 0.8498 40 1 3.3975 -13.0428 0.0975 41 1 1.7656 -14.2876 0.5325 42 1 0.4352 -16.3372 0.2356 43 1 -0.8352 -14.9616 -3.6004 44 1 0.5014 -12.9147 -3.3116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340610853.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:02 Heat of formation + Delta-G solvation = -141.267135 kcal Electronic energy + Delta-G solvation = -26782.061875 eV Core-core repulsion = 22420.991893 eV Total energy + Delta-G solvation = -4361.069982 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.27025 -40.88019 -40.47524 -38.64068 -37.86680 -35.89104 -35.11519 -33.33560 -31.88573 -31.25897 -30.87549 -29.36849 -27.25807 -25.32629 -24.03307 -23.17720 -22.62580 -21.98558 -20.80623 -20.25125 -19.01762 -18.49930 -17.89362 -17.27320 -17.04607 -16.50330 -16.31056 -16.11549 -15.93515 -15.49123 -15.27152 -15.16266 -14.94420 -14.52180 -14.43869 -14.17085 -13.98721 -13.74769 -13.51510 -13.23385 -13.02534 -12.81835 -12.31461 -12.30574 -11.90851 -11.81001 -11.75501 -11.46023 -11.37137 -10.89897 -10.77152 -10.63977 -9.91015 -9.82688 -9.75560 -9.61149 -9.39735 -9.15398 -9.00122 -8.65613 -8.38237 -6.03155 -4.06351 0.59131 0.67012 1.37243 2.24702 2.47917 3.01812 3.18729 3.32087 3.36752 3.38830 3.59555 3.78979 3.98986 4.17549 4.22368 4.36460 4.42990 4.47274 4.51313 4.60948 4.73731 4.86156 5.11881 5.20139 5.31026 5.32722 5.55402 5.57815 5.61663 5.64299 5.67731 5.83719 6.06648 6.13461 6.24890 6.52743 6.66238 6.73899 6.84022 6.93983 7.35290 7.60639 7.66078 7.72445 7.94858 8.02094 8.36108 8.99879 9.58013 11.08021 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025757 B = 0.001403 C = 0.001351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.829272 B =19946.764474 C =20714.275503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.113 3.887 12 N -0.691 5.691 13 C 0.500 3.500 14 O -0.525 6.525 15 C 0.510 3.490 16 O -0.520 6.520 17 N -0.703 5.703 18 C 0.121 3.879 19 C 0.044 3.956 20 O -0.307 6.307 21 C 0.123 3.877 22 C -0.182 4.182 23 C -0.113 4.113 24 C 0.058 3.942 25 F -0.141 7.141 26 C -0.112 4.112 27 C -0.120 4.120 28 H 0.262 0.738 29 H 0.020 0.980 30 H 0.020 0.980 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.411 0.589 36 H 0.416 0.584 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.143 0.857 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.059 -34.218 -0.965 34.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.009 4.009 12 N -0.343 5.343 13 C 0.280 3.720 14 O -0.402 6.402 15 C 0.291 3.709 16 O -0.395 6.395 17 N -0.358 5.358 18 C -0.002 4.002 19 C -0.032 4.032 20 O -0.221 6.221 21 C 0.077 3.923 22 C -0.200 4.200 23 C -0.132 4.132 24 C 0.039 3.961 25 F -0.120 7.120 26 C -0.131 4.131 27 C -0.139 4.139 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.247 0.753 36 H 0.253 0.747 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.161 0.839 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.910 -33.951 -1.094 34.193 hybrid contribution 0.332 0.564 0.197 0.684 sum 4.241 -33.387 -0.898 33.667 Atomic orbital electron populations 1.69952 1.06055 1.26833 1.50434 1.25021 0.94859 0.99298 0.95202 0.86631 0.79555 0.83028 0.78624 1.20228 1.21271 1.20229 1.21165 0.93021 0.90903 1.51153 0.92620 1.19029 0.93795 0.90767 0.97724 1.21930 0.99888 0.92949 1.01320 1.21854 0.91733 0.84699 1.02566 1.46072 1.12241 1.04976 1.70979 1.19958 0.88427 0.84493 0.79151 1.90768 1.15974 1.84672 1.48782 1.20353 0.88796 0.84343 0.77394 1.90767 1.16223 1.84782 1.47762 1.45677 1.11681 1.04658 1.73743 1.21514 0.91614 0.82630 1.04449 1.23179 0.95662 0.98258 0.86054 1.86162 1.59127 1.37358 1.39469 1.19002 0.92582 0.86205 0.94493 1.21130 1.03977 0.94847 1.00080 1.20952 0.96859 0.98453 0.96888 1.17611 0.96907 0.85074 0.96507 1.91503 1.75184 1.49421 1.95897 1.21010 0.99969 0.92907 0.99183 1.20355 0.97950 0.98518 0.97079 0.92862 0.96177 0.96201 0.92418 0.92414 0.91057 0.91064 0.75303 0.74680 0.88462 0.89532 0.90620 0.89638 0.84375 0.84398 0.83903 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.11 1.92 5.67 -4.05 -0.02 1.90 16 12 N -0.69 -10.13 5.55 -60.73 -0.34 -10.46 16 13 C 0.50 7.26 7.89 -11.58 -0.09 7.16 16 14 O -0.53 -8.74 16.48 5.50 0.09 -8.65 16 15 C 0.51 6.30 7.89 -11.58 -0.09 6.21 16 16 O -0.52 -7.30 16.48 5.50 0.09 -7.21 16 17 N -0.70 -6.40 5.50 -60.72 -0.33 -6.74 16 18 C 0.12 0.75 6.06 -4.03 -0.02 0.72 16 19 C 0.04 0.19 4.87 37.16 0.18 0.37 16 20 O -0.31 -2.14 10.08 -19.58 -0.20 -2.34 16 21 C 0.12 0.84 6.69 -39.23 -0.26 0.57 16 22 C -0.18 -1.00 9.04 -39.44 -0.36 -1.35 16 23 C -0.11 -0.67 10.02 -39.53 -0.40 -1.07 16 24 C 0.06 0.42 7.30 -39.42 -0.29 0.14 16 25 F -0.14 -1.18 17.27 2.25 0.04 -1.14 16 26 C -0.11 -0.72 10.02 -39.53 -0.40 -1.11 16 27 C -0.12 -0.80 9.99 -39.44 -0.39 -1.20 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 35 H 0.41 5.47 7.94 -40.82 -0.32 5.14 16 36 H 0.42 3.63 7.94 -40.82 -0.32 3.31 16 37 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.24 7.65 -51.93 -0.40 -0.16 16 40 H 0.09 0.18 7.67 -51.93 -0.40 -0.21 16 41 H 0.14 0.43 6.30 -52.49 -0.33 0.10 16 42 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -33.39 388.60 -7.88 -41.27 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.97 Total: 1.85 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -2.83 Total: -2.99 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.07 Total: -43.01 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.02 Total: -18.20 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.39 -7.88 -41.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340610853.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.998 kcal (2) G-P(sol) polarization free energy of solvation -33.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds