Wall clock time and date at job start Tue Mar 31 2020 20:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99636 * 2 1 4 4 H 1.48499 * 109.46705 * 240.00016 * 3 2 1 5 5 H 1.48496 * 109.47427 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47257 * 119.99887 * 3 2 1 7 7 C 1.37878 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99498 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00044 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46984 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47042 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.47268 * 179.97438 * 11 10 9 13 13 C 1.34780 * 120.00182 * 179.97438 * 12 11 10 14 14 O 1.21345 * 119.99756 * 359.97438 * 13 12 11 15 15 C 1.49452 * 119.99815 * 179.97438 * 13 12 11 16 16 O 1.21344 * 120.00262 * 0.02562 * 15 13 12 17 17 N 1.34778 * 119.99435 * 179.97438 * 15 13 12 18 18 C 1.46505 * 119.99353 * 180.02562 * 17 15 13 19 19 C 1.53008 * 109.46856 * 180.02562 * 18 17 15 20 20 O 1.42895 * 109.47006 * 64.99442 * 19 18 17 21 21 C 1.35951 * 116.99758 * 179.97438 * 20 19 18 22 22 C 1.38708 * 120.03040 * 0.28885 * 21 20 19 23 23 C 1.38147 * 119.96935 * 180.25012 * 22 21 20 24 24 C 1.38455 * 120.02958 * 359.46222 * 23 22 21 25 25 F 1.35101 * 119.97206 * 180.29906 * 24 23 22 26 26 C 1.38452 * 120.06193 * 0.28172 * 24 23 22 27 27 C 1.38156 * 120.03063 * 359.97438 * 26 24 23 28 28 H 0.96994 * 120.00085 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.47055 * 60.00075 * 9 7 2 30 30 H 1.09004 * 109.46950 * 300.00343 * 9 7 2 31 31 H 1.09000 * 109.47224 * 59.99746 * 10 9 7 32 32 H 1.08996 * 109.46991 * 299.99793 * 10 9 7 33 33 H 1.09000 * 109.47522 * 59.99678 * 11 10 9 34 34 H 1.09011 * 109.46934 * 299.99580 * 11 10 9 35 35 H 0.97001 * 120.00336 * 359.97438 * 12 11 10 36 36 H 0.96995 * 120.00605 * 0.02562 * 17 15 13 37 37 H 1.08997 * 109.47700 * 60.00502 * 18 17 15 38 38 H 1.08996 * 109.47102 * 299.99743 * 18 17 15 39 39 H 1.09005 * 109.46539 * 304.99929 * 19 18 17 40 40 H 1.08995 * 109.46786 * 185.00066 * 19 18 17 41 41 H 1.07998 * 120.01328 * 0.02562 * 22 21 20 42 42 H 1.08002 * 119.98838 * 179.74746 * 23 22 21 43 43 H 1.07997 * 119.98751 * 179.97438 * 26 24 23 44 44 H 1.07999 * 120.02057 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0017 10 6 2.2455 -3.6620 0.0027 11 6 1.4805 -4.9870 0.0033 12 7 2.4325 -6.1005 0.0037 13 6 1.9833 -7.3713 0.0047 14 8 0.7903 -7.5930 0.0058 15 6 2.9546 -8.5071 0.0045 16 8 4.1476 -8.2854 0.0039 17 7 2.5053 -9.7778 0.0060 18 6 3.4575 -10.8913 0.0064 19 6 2.6925 -12.2164 0.0076 20 8 1.9607 -12.3450 -1.2130 21 6 1.2220 -13.4750 -1.3736 22 6 1.1979 -14.4364 -0.3741 23 6 0.4509 -15.5866 -0.5408 24 6 -0.2822 -15.7747 -1.7001 25 9 -1.0170 -16.8971 -1.8593 26 6 -0.2632 -14.8134 -2.6964 27 6 0.4871 -13.6647 -2.5346 28 1 -0.4850 0.8400 -0.0004 29 1 0.6242 -2.5575 -0.8879 30 1 0.6248 -2.5563 0.8920 31 1 2.8722 -3.6035 0.8926 32 1 2.8721 -3.6051 -0.8873 33 1 0.8541 -5.0454 -0.8868 34 1 0.8536 -5.0443 0.8932 35 1 3.3862 -5.9233 0.0032 36 1 1.5517 -9.9551 0.0069 37 1 4.0847 -10.8328 0.8959 38 1 4.0834 -10.8344 -0.8841 39 1 2.0007 -12.2357 0.8498 40 1 3.3975 -13.0428 0.0975 41 1 1.7656 -14.2876 0.5325 42 1 0.4352 -16.3372 0.2356 43 1 -0.8352 -14.9616 -3.6004 44 1 0.5014 -12.9147 -3.3116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340610853.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:01 Heat of formation + Delta-G solvation = -164.393870 kcal Electronic energy + Delta-G solvation = -26783.064725 eV Core-core repulsion = 22420.991893 eV Total energy + Delta-G solvation = -4362.072833 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.83120 -41.75907 -41.09986 -39.69341 -38.37928 -37.20627 -36.08149 -35.15150 -33.03751 -32.32938 -31.42780 -29.88882 -28.92217 -26.43224 -25.02643 -24.02574 -23.50674 -22.57697 -22.36056 -21.39730 -19.60323 -19.43820 -18.52454 -18.39525 -18.05346 -17.60243 -17.27101 -17.07605 -16.61175 -16.49720 -16.28887 -16.19186 -16.03889 -15.70636 -15.24914 -15.08197 -14.77952 -14.56060 -14.25521 -14.22202 -13.78262 -13.74962 -13.60979 -13.48437 -13.28478 -12.88176 -12.75101 -12.72207 -12.54167 -12.43024 -11.87990 -11.78372 -11.68884 -11.54802 -11.24467 -10.71802 -10.53371 -10.39249 -10.27494 -10.19072 -9.13156 -8.18506 -6.29595 0.15804 0.18885 0.30634 1.28103 1.42988 1.45410 1.53324 2.05398 2.11708 2.42473 2.56075 2.63117 3.15369 3.32705 3.41080 3.58107 3.77049 3.83926 4.05525 4.09007 4.12182 4.18703 4.28506 4.34745 4.44149 4.53068 4.68414 4.74717 4.87405 4.90301 4.92148 5.09198 5.11979 5.15627 5.15636 5.20355 5.23692 5.52096 5.68370 5.71432 5.85063 5.86181 6.23324 6.30791 6.32440 6.68719 6.87140 6.90607 7.39814 8.93064 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025757 B = 0.001403 C = 0.001351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.829272 B =19946.764474 C =20714.275503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.024 3.976 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.686 5.686 13 C 0.499 3.501 14 O -0.549 6.549 15 C 0.516 3.484 16 O -0.538 6.538 17 N -0.688 5.688 18 C 0.117 3.883 19 C 0.043 3.957 20 O -0.325 6.325 21 C 0.115 3.885 22 C -0.178 4.178 23 C -0.114 4.114 24 C 0.035 3.965 25 F -0.152 7.152 26 C -0.116 4.116 27 C -0.135 4.135 28 H 0.263 0.737 29 H -0.004 1.004 30 H -0.004 1.004 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.420 0.580 36 H 0.419 0.581 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.154 0.846 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.915 -35.123 -0.241 35.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.339 5.339 13 C 0.280 3.720 14 O -0.427 6.427 15 C 0.296 3.704 16 O -0.416 6.416 17 N -0.342 5.342 18 C -0.005 4.005 19 C -0.032 4.032 20 O -0.239 6.239 21 C 0.069 3.931 22 C -0.197 4.197 23 C -0.133 4.133 24 C 0.016 3.984 25 F -0.131 7.131 26 C -0.134 4.134 27 C -0.154 4.154 28 H 0.072 0.928 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.257 0.743 36 H 0.256 0.744 37 H 0.132 0.868 38 H 0.099 0.901 39 H 0.110 0.890 40 H 0.132 0.868 41 H 0.183 0.817 42 H 0.173 0.827 43 H 0.171 0.829 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.786 -34.902 -0.369 35.380 hybrid contribution -0.268 0.785 -0.028 0.830 sum 5.518 -34.117 -0.398 34.563 Atomic orbital electron populations 1.70092 1.07808 1.27823 1.51554 1.25973 0.95735 1.03366 0.94752 0.85502 0.78229 0.78128 0.79188 1.19191 1.21091 1.19129 1.21660 0.93728 0.92146 1.50681 0.91741 1.18935 0.94364 0.92607 0.95419 1.21640 0.98625 0.91873 1.02249 1.21472 0.91613 0.84580 1.01954 1.45882 1.12254 1.04681 1.71062 1.20399 0.88574 0.84886 0.78131 1.90756 1.17170 1.85063 1.49754 1.19851 0.87865 0.84671 0.77986 1.90766 1.16476 1.85010 1.49335 1.45749 1.12477 1.04272 1.71690 1.21778 0.91374 0.82304 1.05008 1.23358 0.96341 0.97892 0.85606 1.86132 1.59442 1.37544 1.40814 1.19155 0.92609 0.86499 0.94833 1.21398 1.03652 0.94008 1.00609 1.21215 0.96235 0.99049 0.96769 1.17900 0.97805 0.85147 0.97558 1.91471 1.75605 1.50002 1.96040 1.21158 0.99986 0.92731 0.99573 1.20506 0.98439 0.98775 0.97643 0.92816 0.98572 0.98518 0.91367 0.91475 0.91852 0.91699 0.74300 0.74356 0.86769 0.90063 0.89049 0.86793 0.81681 0.82674 0.82861 0.83584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 2 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 3 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.54 -30.19 9.11 25.60 0.23 -29.96 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.02 1.25 4.97 29.85 0.15 1.40 16 10 C -0.11 -4.03 5.27 30.59 0.16 -3.87 16 11 C 0.13 4.28 5.67 86.38 0.49 4.77 16 12 N -0.69 -19.55 5.55 -464.41 -2.58 -22.12 16 13 C 0.50 14.09 7.89 87.27 0.69 14.78 16 14 O -0.55 -18.06 16.48 -3.23 -0.05 -18.12 16 15 C 0.52 12.03 7.89 87.27 0.69 12.72 16 16 O -0.54 -14.28 16.48 -3.23 -0.05 -14.33 16 17 N -0.69 -11.31 5.50 -464.39 -2.55 -13.86 16 18 C 0.12 1.15 6.06 86.38 0.52 1.67 16 19 C 0.04 0.23 4.87 71.98 0.35 0.59 16 20 O -0.33 -3.90 10.08 -92.99 -0.94 -4.83 16 21 C 0.11 1.38 6.69 22.50 0.15 1.53 16 22 C -0.18 -1.54 9.04 22.36 0.20 -1.34 16 23 C -0.11 -1.18 10.02 22.30 0.22 -0.96 16 24 C 0.04 0.49 7.30 22.37 0.16 0.66 16 25 F -0.15 -2.53 17.27 44.97 0.78 -1.76 16 26 C -0.12 -1.46 10.02 22.30 0.22 -1.24 16 27 C -0.14 -1.74 9.99 22.36 0.22 -1.51 16 28 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 34 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 35 H 0.42 10.61 7.94 -92.71 -0.74 9.87 16 36 H 0.42 6.63 7.94 -92.71 -0.74 5.89 16 37 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 0.25 7.65 -2.38 -0.02 0.24 16 40 H 0.11 0.04 7.67 -2.39 -0.02 0.02 16 41 H 0.17 0.42 6.30 -2.91 -0.02 0.40 16 42 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 43 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 44 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -72.26 388.60 1.42 -70.84 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -0.43 Total: 14.88 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 4.93 Total: -0.32 kcal Atomic # 7 Polarization: -87.16 SS G_CDS: -4.84 Total: -92.00 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -1.04 Total: -37.28 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -72.26 1.42 -70.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340610853.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.558 kcal (2) G-P(sol) polarization free energy of solvation -72.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds