Wall clock time and date at job start Tue Mar 31 2020 22:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30499 * 125.64952 * 2 1 4 4 C 1.34126 * 109.25673 * 180.02562 * 3 2 1 5 5 N 1.48034 * 125.98915 * 180.02562 * 4 3 2 6 6 O 1.21799 * 119.99505 * 359.97185 * 5 4 3 7 7 O 1.21801 * 119.99764 * 179.97438 * 5 4 3 8 8 C 1.34672 * 108.02188 * 359.73152 * 4 3 2 9 9 N 1.35047 * 125.65459 * 180.02562 * 2 1 3 10 10 C 1.46504 * 126.39006 * 359.97438 * 9 2 1 11 11 C 1.53003 * 109.47133 * 85.00208 * 10 9 2 12 12 C 1.50698 * 109.47194 * 179.97438 * 11 10 9 13 13 O 1.21289 * 119.99840 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00128 * 179.97438 * 12 11 10 15 15 C 1.47024 * 125.64726 * 0.03634 * 14 12 11 16 16 C 1.54321 * 107.39958 * 178.82085 * 15 14 12 17 17 C 1.55405 * 102.83228 * 337.97496 * 16 15 14 18 18 O 1.42897 * 110.89370 * 277.27122 * 17 16 15 19 19 C 1.50697 * 111.07414 * 153.48405 * 17 16 15 20 20 H 1.07994 * 120.00504 * 242.41907 * 19 17 16 21 21 C 1.37876 * 119.99341 * 62.41212 * 19 17 16 22 22 N 1.31515 * 120.00620 * 4.92746 * 21 19 17 23 23 Si 1.86811 * 119.99657 * 184.92297 * 21 19 17 24 24 H 1.48505 * 109.46708 * 95.00337 * 23 21 19 25 25 H 1.48493 * 109.46952 * 215.00017 * 23 21 19 26 26 H 1.48496 * 109.47256 * 335.00588 * 23 21 19 27 27 C 1.47422 * 125.64530 * 179.97438 * 14 12 11 28 28 H 1.09000 * 109.47124 * 269.99457 * 1 2 3 29 29 H 1.09001 * 109.47400 * 29.99680 * 1 2 3 30 30 H 1.09003 * 109.47565 * 149.99661 * 1 2 3 31 31 H 1.07997 * 126.59079 * 180.26453 * 8 4 3 32 32 H 1.08995 * 109.47480 * 325.00053 * 10 9 2 33 33 H 1.09005 * 109.46921 * 204.99789 * 10 9 2 34 34 H 1.09007 * 109.46806 * 59.99838 * 11 10 9 35 35 H 1.08995 * 109.47079 * 299.99579 * 11 10 9 36 36 H 1.08996 * 109.88191 * 298.31587 * 15 14 12 37 37 H 1.09002 * 109.88324 * 59.32707 * 15 14 12 38 38 H 1.08997 * 110.71926 * 96.24702 * 16 15 14 39 39 H 1.09004 * 110.71964 * 219.52077 * 16 15 14 40 40 H 0.96698 * 113.99652 * 292.23333 * 18 17 16 41 41 H 0.96993 * 120.00033 * 179.97438 * 22 21 19 42 42 H 1.08993 * 110.37362 * 323.00856 * 27 14 12 43 43 H 1.09005 * 110.36310 * 85.33675 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 7 4.7268 1.5855 -0.0002 6 8 4.5653 2.7927 0.0001 7 8 5.8531 1.1217 -0.0003 8 6 3.5925 -0.6643 0.0051 9 7 2.2941 -1.0973 -0.0005 10 6 1.8425 -2.4910 -0.0006 11 6 1.5652 -2.9372 -1.4376 12 6 1.1012 -4.3710 -1.4378 13 8 1.0016 -4.9762 -0.3914 14 7 0.7959 -4.9803 -2.6005 15 6 0.8710 -4.3673 -3.9347 16 6 0.4590 -5.4436 -4.9610 17 6 0.7161 -6.7697 -4.1925 18 8 2.0922 -7.1464 -4.2724 19 6 -0.1737 -7.8734 -4.7035 20 1 -0.8960 -8.3331 -4.0453 21 6 -0.0655 -8.2961 -6.0113 22 7 0.8777 -7.8053 -6.7854 23 14 -1.2589 -9.5663 -6.6840 24 1 -2.3799 -8.8767 -7.3719 25 1 -0.5526 -10.4467 -7.6490 26 1 -1.7928 -10.3849 -5.5660 27 6 0.3326 -6.3724 -2.7451 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 4.4776 -1.2831 0.0102 32 1 0.9299 -2.5773 0.5891 33 1 2.6167 -3.1238 0.4333 34 1 2.4779 -2.8509 -2.0273 35 1 0.7910 -2.3044 -1.8715 36 1 0.1883 -3.5196 -3.9922 37 1 1.8903 -4.0363 -4.1337 38 1 -0.5954 -5.3465 -5.2194 39 1 1.0828 -5.3849 -5.8529 40 1 2.3787 -7.4033 -5.1595 41 1 0.9539 -8.1030 -7.7053 42 1 0.8396 -7.0175 -2.0277 43 1 -0.7476 -6.4286 -2.6100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349468413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:18 Heat of formation + Delta-G solvation = -23.849770 kcal Electronic energy + Delta-G solvation = -28972.317362 eV Core-core repulsion = 24636.258940 eV Total energy + Delta-G solvation = -4336.058422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.37146 -41.88892 -39.88647 -37.65126 -36.66334 -35.54232 -34.54551 -32.72841 -32.34132 -31.49746 -29.92840 -28.79185 -28.53547 -26.58150 -25.47816 -24.23374 -22.44922 -22.07089 -20.84756 -19.97343 -19.26972 -19.11268 -18.60103 -17.82292 -17.59992 -17.23706 -16.44104 -16.29355 -15.94064 -15.22005 -15.12677 -14.99766 -14.54726 -14.27237 -14.11833 -13.58136 -13.49308 -13.19632 -13.00171 -12.88780 -12.42119 -12.26242 -12.05544 -11.77320 -11.75130 -11.57998 -11.55883 -11.49109 -11.27124 -11.03884 -10.92065 -10.80142 -10.70485 -10.61282 -10.23109 -9.83278 -9.58380 -9.49102 -8.82180 -8.41062 -8.31037 -6.45158 -4.53398 0.00861 0.91222 1.20538 1.89187 2.20513 2.62804 3.08622 3.15950 3.18400 3.23257 3.64702 3.85180 4.08993 4.13405 4.17721 4.32651 4.53086 4.72621 4.81603 4.86757 4.89485 4.94590 5.14261 5.18389 5.29527 5.33913 5.42277 5.50481 5.60519 5.78200 6.02007 6.10303 6.19839 6.23924 6.37933 6.64340 6.70636 6.85865 7.10114 7.14811 7.57710 7.60924 7.76548 7.82867 8.20248 8.49877 9.14850 9.27844 10.62554 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.002146 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.342829 B =13041.431070 C =13424.706561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.248 3.752 3 N -0.448 5.448 4 C 0.041 3.959 5 N 0.067 4.933 6 O -0.136 6.136 7 O -0.163 6.163 8 C 0.065 3.935 9 N -0.441 5.441 10 C 0.115 3.885 11 C -0.156 4.156 12 C 0.528 3.472 13 O -0.555 6.555 14 N -0.600 5.600 15 C 0.097 3.903 16 C -0.139 4.139 17 C 0.249 3.751 18 O -0.586 6.586 19 C -0.539 4.539 20 H 0.066 0.934 21 C 0.073 3.927 22 N -0.895 5.895 23 Si 0.904 3.096 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.271 1.271 27 C 0.119 3.881 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.207 0.793 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.386 0.614 41 H 0.270 0.730 42 H 0.073 0.927 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 11.989 8.914 14.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.017 4.017 3 N -0.169 5.169 4 C -0.169 4.169 5 N 0.588 4.412 6 O -0.357 6.357 7 O -0.373 6.373 8 C -0.078 4.078 9 N -0.122 5.122 10 C -0.007 4.007 11 C -0.197 4.197 12 C 0.315 3.685 13 O -0.436 6.436 14 N -0.331 5.331 15 C -0.026 4.026 16 C -0.177 4.177 17 C 0.208 3.792 18 O -0.395 6.395 19 C -0.577 4.577 20 H 0.084 0.916 21 C -0.130 4.130 22 N -0.534 5.534 23 Si 0.731 3.269 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.196 1.196 27 C -0.002 4.002 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.105 0.895 31 H 0.224 0.776 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.237 0.763 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.325 12.050 9.971 15.696 hybrid contribution 0.097 -1.224 -1.307 1.793 sum -1.229 10.826 8.664 13.921 Atomic orbital electron populations 1.20430 0.82733 1.05376 1.04877 1.23544 0.96392 0.79368 1.02357 1.69725 0.98785 1.29122 1.19249 1.20580 0.87833 0.87503 1.20987 1.42253 1.00497 1.00885 0.97518 1.94580 1.92565 0.96208 1.52307 1.94568 1.07458 1.80640 1.54656 1.22427 0.89232 0.93885 1.02209 1.45886 1.05243 1.09313 1.51745 1.21974 1.04289 0.76160 0.98233 1.21972 1.04716 0.95917 0.97054 1.19577 0.78316 0.87507 0.83106 1.90712 1.55241 1.66890 1.30710 1.48610 1.63698 1.14942 1.05885 1.22231 1.00227 0.97188 0.82949 1.23237 1.01721 0.95281 0.97486 1.19655 0.81258 0.90630 0.87655 1.86097 1.27482 1.89022 1.36934 1.21439 1.20191 1.19611 0.96496 0.91560 1.25000 0.95318 0.96091 0.96550 1.69619 1.31920 1.43706 1.08149 0.86380 0.80683 0.80941 0.78893 1.20427 1.20938 1.19598 1.22454 0.98516 0.79794 0.99449 0.88848 0.88024 0.89480 0.77614 0.86596 0.86646 0.87940 0.88084 0.92681 0.92242 0.91202 0.89571 0.76287 0.91984 0.90854 0.90727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.04 36.00 0.36 -0.04 16 2 C 0.25 2.22 7.90 -155.42 -1.23 0.99 16 3 N -0.45 -5.51 11.23 -7.88 -0.09 -5.60 16 4 C 0.04 0.50 8.02 -145.53 -1.17 -0.67 16 5 N 0.07 0.93 4.46 32.62 0.15 1.08 16 6 O -0.14 -2.07 19.24 -29.46 -0.57 -2.63 16 7 O -0.16 -2.20 19.02 -29.46 -0.56 -2.76 16 8 C 0.07 0.59 11.25 -16.56 -0.19 0.40 16 9 N -0.44 -3.56 2.75 -113.90 -0.31 -3.87 16 10 C 0.11 0.84 4.97 -4.04 -0.02 0.82 16 11 C -0.16 -1.40 5.22 -27.88 -0.15 -1.55 16 12 C 0.53 7.52 7.85 -10.99 -0.09 7.43 16 13 O -0.56 -9.48 16.24 5.55 0.09 -9.39 16 14 N -0.60 -9.82 3.33 -170.52 -0.57 -10.39 16 15 C 0.10 1.46 6.48 -3.06 -0.02 1.44 16 16 C -0.14 -2.64 5.52 -24.76 -0.14 -2.78 16 17 C 0.25 5.44 0.89 -89.49 -0.08 5.36 16 18 O -0.59 -13.81 13.19 -35.23 -0.46 -14.27 16 19 C -0.54 -12.99 8.27 -34.44 -0.28 -13.27 16 20 H 0.07 1.60 7.79 -52.49 -0.41 1.19 16 21 C 0.07 1.76 5.26 -17.82 -0.09 1.67 16 22 N -0.89 -21.62 10.77 55.43 0.60 -21.02 16 23 Si 0.90 18.99 29.54 -169.99 -5.02 13.97 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 27 C 0.12 2.34 6.08 -2.53 -0.02 2.33 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.34 7.36 -51.93 -0.38 -0.04 16 31 H 0.21 1.27 8.06 -52.49 -0.42 0.85 16 32 H 0.12 0.76 7.88 -51.93 -0.41 0.35 16 33 H 0.12 0.83 8.09 -51.93 -0.42 0.41 16 34 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.10 0.75 7.67 -51.93 -0.40 0.35 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 1.34 8.03 -51.93 -0.42 0.93 16 39 H 0.09 1.76 7.72 -51.93 -0.40 1.35 16 40 H 0.39 9.26 7.18 45.56 0.33 9.59 16 41 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 42 H 0.07 1.55 8.04 -51.93 -0.42 1.14 16 43 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -30.00 373.68 -9.24 -39.23 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.02 Total: 7.89 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -3.10 Total: 2.15 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: -0.23 Total: -39.81 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -1.50 Total: -29.06 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.00 -9.24 -39.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349468413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.383 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds