Wall clock time and date at job start Tue Mar 31 2020 22:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30499 * 125.64952 * 2 1 4 4 C 1.34126 * 109.25673 * 180.02562 * 3 2 1 5 5 N 1.48034 * 125.98915 * 180.02562 * 4 3 2 6 6 O 1.21799 * 119.99505 * 359.97185 * 5 4 3 7 7 O 1.21801 * 119.99764 * 179.97438 * 5 4 3 8 8 C 1.34672 * 108.02188 * 359.73152 * 4 3 2 9 9 N 1.35047 * 125.65459 * 180.02562 * 2 1 3 10 10 C 1.46504 * 126.39006 * 359.97438 * 9 2 1 11 11 C 1.53003 * 109.47133 * 85.00208 * 10 9 2 12 12 C 1.50698 * 109.47194 * 179.97438 * 11 10 9 13 13 O 1.21289 * 119.99840 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00128 * 179.97438 * 12 11 10 15 15 C 1.47024 * 125.64726 * 0.03634 * 14 12 11 16 16 C 1.54321 * 107.39958 * 178.82085 * 15 14 12 17 17 C 1.55405 * 102.83228 * 337.97496 * 16 15 14 18 18 O 1.42897 * 110.89370 * 277.27122 * 17 16 15 19 19 C 1.50697 * 111.07414 * 153.48405 * 17 16 15 20 20 H 1.07994 * 120.00504 * 242.41907 * 19 17 16 21 21 C 1.37876 * 119.99341 * 62.41212 * 19 17 16 22 22 N 1.31515 * 120.00620 * 4.92746 * 21 19 17 23 23 Si 1.86811 * 119.99657 * 184.92297 * 21 19 17 24 24 H 1.48505 * 109.46708 * 95.00337 * 23 21 19 25 25 H 1.48493 * 109.46952 * 215.00017 * 23 21 19 26 26 H 1.48496 * 109.47256 * 335.00588 * 23 21 19 27 27 C 1.47422 * 125.64530 * 179.97438 * 14 12 11 28 28 H 1.09000 * 109.47124 * 269.99457 * 1 2 3 29 29 H 1.09001 * 109.47400 * 29.99680 * 1 2 3 30 30 H 1.09003 * 109.47565 * 149.99661 * 1 2 3 31 31 H 1.07997 * 126.59079 * 180.26453 * 8 4 3 32 32 H 1.08995 * 109.47480 * 325.00053 * 10 9 2 33 33 H 1.09005 * 109.46921 * 204.99789 * 10 9 2 34 34 H 1.09007 * 109.46806 * 59.99838 * 11 10 9 35 35 H 1.08995 * 109.47079 * 299.99579 * 11 10 9 36 36 H 1.08996 * 109.88191 * 298.31587 * 15 14 12 37 37 H 1.09002 * 109.88324 * 59.32707 * 15 14 12 38 38 H 1.08997 * 110.71926 * 96.24702 * 16 15 14 39 39 H 1.09004 * 110.71964 * 219.52077 * 16 15 14 40 40 H 0.96698 * 113.99652 * 292.23333 * 18 17 16 41 41 H 0.96993 * 120.00033 * 179.97438 * 22 21 19 42 42 H 1.08993 * 110.37362 * 323.00856 * 27 14 12 43 43 H 1.09005 * 110.36310 * 85.33675 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2675 1.0604 0.0000 4 6 3.5543 0.6819 -0.0006 5 7 4.7268 1.5855 -0.0002 6 8 4.5653 2.7927 0.0001 7 8 5.8531 1.1217 -0.0003 8 6 3.5925 -0.6643 0.0051 9 7 2.2941 -1.0973 -0.0005 10 6 1.8425 -2.4910 -0.0006 11 6 1.5652 -2.9372 -1.4376 12 6 1.1012 -4.3710 -1.4378 13 8 1.0016 -4.9762 -0.3914 14 7 0.7959 -4.9803 -2.6005 15 6 0.8710 -4.3673 -3.9347 16 6 0.4590 -5.4436 -4.9610 17 6 0.7161 -6.7697 -4.1925 18 8 2.0922 -7.1464 -4.2724 19 6 -0.1737 -7.8734 -4.7035 20 1 -0.8960 -8.3331 -4.0453 21 6 -0.0655 -8.2961 -6.0113 22 7 0.8777 -7.8053 -6.7854 23 14 -1.2589 -9.5663 -6.6840 24 1 -2.3799 -8.8767 -7.3719 25 1 -0.5526 -10.4467 -7.6490 26 1 -1.7928 -10.3849 -5.5660 27 6 0.3326 -6.3724 -2.7451 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 4.4776 -1.2831 0.0102 32 1 0.9299 -2.5773 0.5891 33 1 2.6167 -3.1238 0.4333 34 1 2.4779 -2.8509 -2.0273 35 1 0.7910 -2.3044 -1.8715 36 1 0.1883 -3.5196 -3.9922 37 1 1.8903 -4.0363 -4.1337 38 1 -0.5954 -5.3465 -5.2194 39 1 1.0828 -5.3849 -5.8529 40 1 2.3787 -7.4033 -5.1595 41 1 0.9539 -8.1030 -7.7053 42 1 0.8396 -7.0175 -2.0277 43 1 -0.7476 -6.4286 -2.6100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349468413.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:17 Heat of formation + Delta-G solvation = -42.256320 kcal Electronic energy + Delta-G solvation = -28973.115530 eV Core-core repulsion = 24636.258940 eV Total energy + Delta-G solvation = -4336.856590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.12205 -42.85286 -41.11585 -39.07280 -37.68295 -36.33563 -36.08961 -34.18385 -33.33583 -32.45054 -31.26078 -29.99912 -29.49924 -27.64015 -26.76116 -25.24919 -23.71354 -22.91669 -21.69456 -21.43158 -20.29171 -20.10238 -19.57613 -19.15881 -18.78928 -18.41145 -17.35778 -17.17675 -16.93850 -16.90723 -16.40571 -15.91496 -15.74022 -15.39921 -15.03644 -14.74515 -14.49092 -14.14105 -13.86874 -13.67174 -13.56301 -13.44926 -13.27601 -13.22086 -13.08449 -12.80484 -12.62898 -12.56436 -12.54240 -12.43631 -12.34471 -12.29153 -11.87564 -11.68788 -11.45334 -11.29897 -10.98148 -10.62424 -10.21587 -10.15612 -9.60925 -8.26729 -6.40712 -0.96006 0.05896 0.48043 1.18453 1.40562 1.40973 1.45864 1.53192 1.54816 2.05990 2.39159 2.99140 3.00052 3.19405 3.41960 3.53521 3.55746 3.72540 3.83839 4.01196 4.13689 4.23916 4.29794 4.35327 4.37413 4.58453 4.60626 4.62975 4.64389 4.71430 4.72336 4.87592 5.01277 5.17168 5.22799 5.24372 5.45109 5.53087 5.54209 5.76712 6.05576 6.10439 6.57666 6.62914 6.64799 7.05473 7.30262 7.42395 8.79115 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023033 B = 0.002146 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.342829 B =13041.431070 C =13424.706561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.260 3.740 3 N -0.492 5.492 4 C 0.007 3.993 5 N 0.069 4.931 6 O -0.195 6.195 7 O -0.149 6.149 8 C 0.091 3.909 9 N -0.433 5.433 10 C 0.120 3.880 11 C -0.143 4.143 12 C 0.528 3.472 13 O -0.586 6.586 14 N -0.607 5.607 15 C 0.106 3.894 16 C -0.132 4.132 17 C 0.231 3.769 18 O -0.596 6.596 19 C -0.561 4.561 20 H 0.056 0.944 21 C 0.037 3.963 22 N -0.908 5.908 23 Si 0.957 3.043 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.275 1.275 27 C 0.126 3.874 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.236 0.764 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.380 0.620 41 H 0.271 0.729 42 H 0.049 0.951 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.432 12.134 9.109 15.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.005 4.005 3 N -0.213 5.213 4 C -0.201 4.201 5 N 0.584 4.416 6 O -0.402 6.402 7 O -0.366 6.366 8 C -0.053 4.053 9 N -0.114 5.114 10 C -0.001 4.001 11 C -0.183 4.183 12 C 0.318 3.682 13 O -0.467 6.467 14 N -0.339 5.339 15 C -0.016 4.016 16 C -0.171 4.171 17 C 0.191 3.809 18 O -0.405 6.405 19 C -0.599 4.599 20 H 0.075 0.925 21 C -0.164 4.164 22 N -0.547 5.547 23 Si 0.783 3.217 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.200 1.200 27 C 0.003 3.997 28 H 0.127 0.873 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.253 0.747 32 H 0.148 0.852 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.230 0.770 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.289 12.329 10.174 16.148 hybrid contribution 0.371 -1.450 -1.331 2.003 sum -1.918 10.879 8.843 14.151 Atomic orbital electron populations 1.20675 0.80139 1.06527 1.06259 1.24215 0.97548 0.78700 1.00068 1.69666 0.99279 1.31053 1.21298 1.20675 0.87374 0.88099 1.23997 1.42531 1.01155 1.00979 0.96904 1.94577 1.92871 0.97343 1.55450 1.94517 1.08383 1.80422 1.53272 1.22891 0.90477 0.92801 0.99141 1.45952 1.04740 1.09460 1.51239 1.22011 1.05213 0.75407 0.97436 1.21925 1.05828 0.92085 0.98493 1.20414 0.76928 0.89204 0.81703 1.90706 1.56178 1.68201 1.31644 1.48646 1.64515 1.13564 1.07195 1.22201 1.01956 0.96532 0.80905 1.23013 1.01081 0.95237 0.97752 1.19877 0.79972 0.91479 0.89588 1.86084 1.28620 1.89269 1.36547 1.21705 1.20649 1.20771 0.96804 0.92549 1.25584 0.96527 0.97544 0.96772 1.69685 1.32520 1.44270 1.08208 0.85561 0.79130 0.79016 0.78004 1.19800 1.20980 1.19985 1.22124 0.98347 0.81868 0.97328 0.87292 0.87749 0.87383 0.74733 0.85222 0.86124 0.86802 0.85449 0.88744 0.90928 0.91737 0.91258 0.76971 0.91924 0.93287 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.04 71.23 0.71 0.19 16 2 C 0.26 3.85 7.90 138.13 1.09 4.94 16 3 N -0.49 -11.45 11.23 -178.84 -2.01 -13.46 16 4 C 0.01 0.16 8.02 128.16 1.03 1.19 16 5 N 0.07 1.93 4.46 -50.70 -0.23 1.70 16 6 O -0.20 -6.27 19.24 18.89 0.36 -5.90 16 7 O -0.15 -3.93 19.02 18.88 0.36 -3.57 16 8 C 0.09 1.37 11.25 83.09 0.93 2.30 16 9 N -0.43 -5.32 2.75 -514.28 -1.41 -6.73 16 10 C 0.12 1.23 4.97 86.38 0.43 1.66 16 11 C -0.14 -1.89 5.22 29.85 0.16 -1.73 16 12 C 0.53 13.34 7.85 87.66 0.69 14.03 16 13 O -0.59 -18.66 16.24 -3.06 -0.05 -18.71 16 14 N -0.61 -18.42 3.33 -811.79 -2.70 -21.12 16 15 C 0.11 2.86 6.48 86.73 0.56 3.43 16 16 C -0.13 -4.89 5.52 31.87 0.18 -4.72 16 17 C 0.23 10.11 0.89 -10.06 -0.01 10.10 16 18 O -0.60 -28.35 13.19 -148.98 -1.96 -30.31 16 19 C -0.56 -27.28 8.27 25.60 0.21 -27.07 16 20 H 0.06 2.77 7.79 -2.91 -0.02 2.74 16 21 C 0.04 1.78 5.26 84.65 0.45 2.23 16 22 N -0.91 -43.91 10.77 21.45 0.23 -43.67 16 23 Si 0.96 38.80 29.54 68.60 2.03 40.83 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 25 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 27 C 0.13 4.91 6.08 86.86 0.53 5.44 16 28 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.11 0.30 7.36 -2.39 -0.02 0.28 16 31 H 0.24 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.13 1.09 7.88 -2.39 -0.02 1.07 16 33 H 0.12 1.23 8.09 -2.38 -0.02 1.21 16 34 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.13 1.10 7.67 -2.39 -0.02 1.08 16 36 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 2.41 8.03 -2.39 -0.02 2.39 16 39 H 0.07 2.78 7.72 -2.38 -0.02 2.76 16 40 H 0.38 18.55 7.18 -74.06 -0.53 18.02 16 41 H 0.27 12.57 8.31 -92.71 -0.77 11.80 16 42 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 43 H 0.08 2.87 8.03 -2.38 -0.02 2.85 16 Total: -1.00 -68.02 373.68 2.10 -65.92 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.53 Total: 23.03 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 6.96 Total: 11.99 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -6.12 Total: -83.28 kcal Atomic # 8 Polarization: -57.20 SS G_CDS: -1.29 Total: -58.50 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -68.02 2.10 -65.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349468413.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.662 kcal (2) G-P(sol) polarization free energy of solvation -68.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds