Wall clock time and date at job start Tue Mar 31 2020 20:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86804 * 119.99564 * 2 1 4 4 H 1.48500 * 109.47217 * 275.34605 * 3 2 1 5 5 H 1.48506 * 109.47010 * 35.34412 * 3 2 1 6 6 H 1.48496 * 109.47296 * 155.34212 * 3 2 1 7 7 C 1.38888 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99878 * 353.09791 * 7 2 1 9 9 N 1.37135 * 119.99678 * 173.09436 * 7 2 1 10 10 C 1.34773 * 120.00269 * 128.20012 * 9 7 2 11 11 O 1.21282 * 120.00517 * 183.75564 * 10 9 7 12 12 C 1.50710 * 119.99563 * 3.75571 * 10 9 7 13 13 C 1.53003 * 109.46728 * 185.01173 * 12 10 9 14 14 C 1.50696 * 109.46711 * 184.88190 * 13 12 10 15 15 C 1.38361 * 119.85632 * 269.72718 * 14 13 12 16 16 C 1.37960 * 120.14463 * 179.72671 * 15 14 13 17 17 C 1.39575 * 119.85265 * 0.54244 * 16 15 14 18 18 C 1.47853 * 120.14295 * 179.70484 * 17 16 15 19 19 N 1.34771 * 119.99933 * 0.02562 * 18 17 16 20 20 O 1.21552 * 119.99834 * 180.02562 * 18 17 16 21 21 C 1.39578 * 119.71257 * 359.73186 * 17 16 15 22 22 C 1.37954 * 119.85093 * 359.97438 * 21 17 16 23 23 C 1.39798 * 120.00100 * 308.19692 * 9 7 2 24 24 C 1.38960 * 120.07685 * 351.69665 * 23 9 7 25 25 C 1.38083 * 119.91742 * 180.22974 * 24 23 9 26 26 C 1.38303 * 120.07982 * 359.47758 * 25 24 23 27 27 C 1.38309 * 120.15755 * 0.54756 * 26 25 24 28 28 C 1.38091 * 120.07508 * 359.70494 * 27 26 25 29 29 H 0.97004 * 120.00680 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46857 * 305.00723 * 12 10 9 31 31 H 1.08990 * 109.47001 * 65.01078 * 12 10 9 32 32 H 1.08996 * 109.47259 * 304.87706 * 13 12 10 33 33 H 1.09001 * 109.47642 * 64.88227 * 13 12 10 34 34 H 1.07997 * 119.92169 * 359.97438 * 15 14 13 35 35 H 1.08005 * 120.07138 * 180.24773 * 16 15 14 36 36 H 0.97007 * 120.00384 * 359.97438 * 19 18 17 37 37 H 0.96999 * 120.00169 * 179.97438 * 19 18 17 38 38 H 1.08001 * 120.07212 * 179.97438 * 21 17 16 39 39 H 1.08005 * 119.92480 * 179.97438 * 22 21 17 40 40 H 1.07999 * 120.03589 * 359.95961 * 24 23 9 41 41 H 1.08003 * 119.95783 * 179.74500 * 25 24 23 42 42 H 1.07998 * 119.92441 * 180.25453 * 26 25 24 43 43 H 1.08001 * 119.96354 * 179.73281 * 27 26 25 44 44 H 1.08002 * 120.03591 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.3826 2.1118 -1.3940 5 1 1.5065 2.6175 0.8100 6 1 3.5975 1.4105 0.5841 7 6 2.0087 -1.2028 0.0005 8 1 1.4746 -2.1346 0.1134 9 7 3.3726 -1.2070 -0.1423 10 6 4.1407 -1.8740 0.7418 11 8 5.3493 -1.8218 0.6556 12 6 3.4976 -2.6846 1.8375 13 6 4.5807 -3.2328 2.7689 14 6 3.9499 -4.1405 3.7932 15 6 3.5100 -3.6196 4.9972 16 6 2.9266 -4.4441 5.9369 17 6 2.7907 -5.8084 5.6755 18 6 2.1723 -6.6990 6.6807 19 7 1.7379 -6.1938 7.8522 20 8 2.0557 -7.8868 6.4505 21 6 3.2417 -6.3284 4.4613 22 6 3.8178 -5.4920 3.5277 23 6 3.9663 -0.5195 -1.2049 24 6 3.1766 0.0223 -2.2118 25 6 3.7668 0.6966 -3.2623 26 6 5.1414 0.8424 -3.3076 27 6 5.9305 0.3040 -2.3075 28 6 5.3475 -0.3761 -1.2565 29 1 -0.4851 0.8400 0.0004 30 1 2.8162 -2.0515 2.4057 31 1 2.9426 -3.5134 1.3983 32 1 5.3107 -3.7946 2.1862 33 1 5.0784 -2.4052 3.2743 34 1 3.6201 -2.5646 5.2001 35 1 2.5800 -4.0356 6.8748 36 1 1.8312 -5.2459 8.0361 37 1 1.3318 -6.7780 8.5116 38 1 3.1399 -7.3833 4.2531 39 1 4.1676 -5.8931 2.5879 40 1 2.1028 -0.0877 -2.1748 41 1 3.1539 1.1144 -4.0473 42 1 5.6001 1.3738 -4.1283 43 1 7.0040 0.4159 -2.3482 44 1 5.9643 -0.7960 -0.4757 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357232586.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:34 Heat of formation + Delta-G solvation = -26.096126 kcal Electronic energy + Delta-G solvation = -27938.754999 eV Core-core repulsion = 24013.448431 eV Total energy + Delta-G solvation = -3925.306568 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.142 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.82217 -41.10985 -39.59286 -39.06648 -36.93612 -35.27181 -34.54464 -34.15609 -31.86496 -31.72077 -31.48269 -30.07938 -27.26219 -26.30334 -23.92690 -23.61347 -23.21587 -22.59537 -21.28200 -21.02946 -19.74270 -19.16404 -18.15960 -17.88140 -17.65485 -17.07194 -16.65742 -16.34719 -16.08154 -15.86506 -15.82735 -15.68030 -15.39182 -15.02103 -14.72923 -14.59863 -14.44069 -14.30943 -14.16225 -14.07769 -13.64766 -13.58363 -13.15946 -12.74371 -12.64462 -12.49118 -12.35805 -12.21523 -12.09054 -11.86938 -11.75294 -11.31486 -11.20298 -10.82075 -10.74844 -10.13665 -9.94099 -9.70153 -9.65523 -8.85551 -8.53303 -6.46770 -0.17881 0.42718 0.43883 0.55680 1.23496 1.30285 1.38830 1.80664 1.83020 2.13748 2.47160 2.54178 2.75606 2.89107 3.12303 3.66298 3.82325 3.90568 4.02621 4.09967 4.18707 4.21471 4.23472 4.36308 4.44571 4.47381 4.54102 4.68242 4.73796 4.80678 4.86269 4.91494 4.95968 5.11542 5.22007 5.27896 5.28731 5.38012 5.50268 5.60137 5.65815 5.67299 5.74052 5.84654 5.93432 6.00576 6.03997 6.39897 6.41075 6.83889 7.23858 7.26958 7.55376 8.50457 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.018025 B = 0.002650 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.061203 B =10565.215380 C =11415.415317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.060 3.940 3 Si 0.913 3.087 4 H -0.244 1.244 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.358 4.358 8 H 0.091 0.909 9 N -0.423 5.423 10 C 0.489 3.511 11 O -0.571 6.571 12 C -0.104 4.104 13 C -0.061 4.061 14 C -0.051 4.051 15 C -0.128 4.128 16 C -0.072 4.072 17 C -0.163 4.163 18 C 0.563 3.437 19 N -0.829 5.829 20 O -0.591 6.591 21 C -0.070 4.070 22 C -0.130 4.130 23 C 0.125 3.875 24 C -0.178 4.178 25 C -0.109 4.109 26 C -0.159 4.159 27 C -0.106 4.106 28 C -0.204 4.204 29 H 0.283 0.717 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.163 0.837 36 H 0.417 0.583 37 H 0.413 0.587 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.117 0.883 41 H 0.140 0.860 42 H 0.152 0.848 43 H 0.147 0.853 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.045 -2.601 9.787 11.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.168 1.168 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.485 4.485 8 H 0.108 0.892 9 N -0.133 5.133 10 C 0.283 3.717 11 O -0.455 6.455 12 C -0.143 4.143 13 C -0.099 4.099 14 C -0.052 4.052 15 C -0.146 4.146 16 C -0.090 4.090 17 C -0.166 4.166 18 C 0.350 3.650 19 N -0.393 5.393 20 O -0.473 6.473 21 C -0.089 4.089 22 C -0.148 4.148 23 C 0.029 3.971 24 C -0.198 4.198 25 C -0.127 4.127 26 C -0.178 4.178 27 C -0.125 4.125 28 C -0.224 4.224 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.165 0.835 35 H 0.181 0.819 36 H 0.250 0.750 37 H 0.245 0.755 38 H 0.147 0.853 39 H 0.154 0.846 40 H 0.135 0.865 41 H 0.158 0.842 42 H 0.170 0.830 43 H 0.165 0.835 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.373 -3.223 9.535 11.913 hybrid contribution -0.517 0.824 0.091 0.977 sum 5.856 -2.399 9.626 11.520 Atomic orbital electron populations 1.69707 1.06974 1.29382 1.46311 1.25767 0.95423 1.00483 0.92983 0.86342 0.78744 0.80921 0.80157 1.16802 1.21278 1.20432 1.18838 0.79427 0.95148 1.55046 0.89169 1.41593 1.07028 1.44154 1.20514 1.21547 0.86281 0.81046 0.82858 1.90194 1.15309 1.65742 1.74277 1.21343 0.98891 0.99471 0.94608 1.20373 0.96317 0.98456 0.94725 1.20198 0.95922 0.93995 0.95063 1.21327 0.98892 1.01259 0.93097 1.21555 0.96075 0.91173 1.00215 1.19955 1.05737 0.94717 0.96174 1.18444 0.76991 0.86783 0.82780 1.43566 1.63173 1.14831 1.17733 1.90783 1.58822 1.18074 1.79625 1.21308 0.94867 1.00411 0.92337 1.21195 1.00475 0.93066 1.00065 1.18802 0.93025 0.95862 0.89367 1.21082 1.00329 1.02821 0.95609 1.21225 0.96002 0.98182 0.97322 1.21390 0.93193 1.02684 1.00496 1.21445 1.00890 0.96544 0.93574 1.22841 0.93832 1.02969 1.02774 0.90647 0.88550 0.89026 0.90282 0.89993 0.83477 0.81938 0.75032 0.75467 0.85343 0.84579 0.86509 0.84216 0.83044 0.83510 0.81379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.24 13.96 21.65 0.30 -46.94 16 2 C 0.06 3.09 4.29 84.91 0.36 3.45 16 3 Si 0.91 42.36 24.16 68.60 1.66 44.01 16 4 H -0.24 -10.84 6.07 99.48 0.60 -10.24 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.28 -13.74 6.90 99.48 0.69 -13.05 16 7 C -0.36 -18.06 7.96 84.02 0.67 -17.39 16 8 H 0.09 4.80 7.90 -2.91 -0.02 4.78 16 9 N -0.42 -20.06 2.26 -458.89 -1.04 -21.09 16 10 C 0.49 20.97 7.57 87.66 0.66 21.64 16 11 O -0.57 -25.08 12.30 -3.04 -0.04 -25.12 16 12 C -0.10 -3.57 4.50 29.85 0.13 -3.43 16 13 C -0.06 -1.69 4.73 29.85 0.14 -1.55 16 14 C -0.05 -1.25 5.14 -19.81 -0.10 -1.35 16 15 C -0.13 -2.60 9.68 22.23 0.22 -2.38 16 16 C -0.07 -1.24 9.54 22.53 0.21 -1.02 16 17 C -0.16 -3.59 5.87 -20.09 -0.12 -3.71 16 18 C 0.56 12.63 8.05 86.79 0.70 13.33 16 19 N -0.83 -10.09 8.82 -175.60 -1.55 -11.64 16 20 O -0.59 -18.44 17.18 -3.88 -0.07 -18.51 16 21 C -0.07 -1.73 9.60 22.53 0.22 -1.51 16 22 C -0.13 -3.14 9.68 22.23 0.22 -2.93 16 23 C 0.13 5.79 4.40 38.22 0.17 5.96 16 24 C -0.18 -7.84 5.78 22.41 0.13 -7.71 16 25 C -0.11 -3.94 9.79 22.25 0.22 -3.72 16 26 C -0.16 -5.04 10.04 22.30 0.22 -4.82 16 27 C -0.11 -3.64 10.04 22.25 0.22 -3.42 16 28 C -0.20 -8.65 9.03 22.41 0.20 -8.45 16 29 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 30 H 0.10 3.39 7.90 -2.39 -0.02 3.37 16 31 H 0.09 3.12 8.12 -2.39 -0.02 3.10 16 32 H 0.08 2.25 7.83 -2.39 -0.02 2.23 16 33 H 0.08 2.20 8.08 -2.39 -0.02 2.19 16 34 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.16 1.41 6.41 -2.91 -0.02 1.39 16 36 H 0.42 2.40 6.86 -92.70 -0.64 1.77 16 37 H 0.41 3.90 8.93 -92.71 -0.83 3.08 16 38 H 0.13 3.22 7.65 -2.91 -0.02 3.20 16 39 H 0.14 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.12 5.61 5.69 -2.91 -0.02 5.59 16 41 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 42 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 43 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 44 H 0.17 7.42 4.58 -58.78 -0.27 7.15 16 Total: -1.00 -68.56 362.99 2.97 -65.60 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: -0.78 Total: 32.70 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 4.48 Total: -19.01 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -2.29 Total: -79.68 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -0.10 Total: -43.63 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.66 Total: 44.01 kcal Total: -68.56 2.97 -65.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357232586.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.503 kcal (2) G-P(sol) polarization free energy of solvation -68.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds