Wall clock time and date at job start Tue Mar 31 2020 21:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99666 * 2 1 4 4 O 1.20829 * 120.00306 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99788 * 180.02562 * 3 2 1 6 6 O 1.42903 * 113.28404 * 21.93080 * 5 3 2 7 7 C 1.53500 * 114.20844 * 155.00025 * 5 3 2 8 8 N 1.47062 * 87.98721 * 139.65123 * 7 5 3 9 9 C 1.34777 * 136.05651 * 152.83902 * 8 7 5 10 10 O 1.21593 * 119.99953 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99726 * 180.27578 * 9 8 7 12 12 C 1.40196 * 119.99786 * 179.72659 * 11 9 8 13 13 C 1.40409 * 125.97477 * 0.02562 * 12 11 9 14 14 C 1.35236 * 107.86982 * 179.97438 * 13 12 11 15 15 C 1.50705 * 126.07145 * 179.97438 * 14 13 12 16 16 N 1.34965 * 107.85802 * 359.97438 * 14 13 12 17 17 C 1.46503 * 125.97610 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47031 * 89.99877 * 17 16 14 19 19 H 1.08002 * 119.99705 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00248 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99816 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00145 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46892 * 90.00526 * 22 20 18 24 24 H 1.48505 * 109.47119 * 210.00289 * 22 20 18 25 25 H 1.48497 * 109.47493 * 330.00462 * 22 20 18 26 26 N 1.31208 * 125.97545 * 179.69629 * 12 11 9 27 27 C 1.47067 * 87.88602 * 333.10138 * 8 7 5 28 28 H 1.09005 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47599 * 300.00204 * 1 2 3 30 30 H 1.09000 * 109.47629 * 60.00203 * 1 2 3 31 31 H 0.96700 * 113.99424 * 313.07065 * 6 5 3 32 32 H 1.09005 * 113.46346 * 24.86922 * 7 5 3 33 33 H 1.08998 * 113.51550 * 254.44517 * 7 5 3 34 34 H 0.97000 * 120.00483 * 359.73178 * 11 9 8 35 35 H 1.08003 * 126.06048 * 359.97438 * 13 12 11 36 36 H 1.08994 * 109.46979 * 90.02028 * 15 14 13 37 37 H 1.08997 * 109.46862 * 210.02362 * 15 14 13 38 38 H 1.08998 * 109.46784 * 330.01674 * 15 14 13 39 39 H 1.08995 * 109.47501 * 210.00017 * 17 16 14 40 40 H 1.09004 * 109.47182 * 330.00311 * 17 16 14 41 41 H 0.96996 * 119.99988 * 179.97438 * 21 20 18 42 42 H 1.09000 * 113.47213 * 141.67818 * 27 8 7 43 43 H 1.08998 * 113.46769 * 272.11820 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2749 -0.0006 6 8 4.1939 0.0886 -0.4913 7 6 4.1281 2.5751 -0.5922 8 7 5.1306 2.5705 0.4838 9 6 6.3810 3.0460 0.6472 10 8 6.9243 3.6511 -0.2568 11 7 7.0312 2.8464 1.8108 12 6 8.3341 3.3360 1.9786 13 6 9.0772 4.0480 1.0234 14 6 10.2802 4.3406 1.5674 15 6 11.3977 5.0961 0.8954 16 7 10.3023 3.8359 2.8189 17 6 11.4185 3.9260 3.7636 18 6 11.2777 5.1787 4.5894 19 1 10.4403 5.8412 4.4271 20 6 12.2173 5.4786 5.5529 21 7 13.2367 4.6715 5.7509 22 14 12.0423 7.0310 6.5770 23 1 11.2500 6.7324 7.7969 24 1 13.3888 7.5199 6.9687 25 1 11.3493 8.0746 5.7797 26 7 9.0701 3.2144 3.0580 27 6 4.1706 1.8130 1.3008 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.8376 -0.7286 -0.1167 32 1 3.4339 3.4135 -0.5352 33 1 4.5576 2.4506 -1.5862 34 1 6.5978 2.3639 2.5320 35 1 8.7465 4.3145 0.0304 36 1 11.2883 6.1617 1.0967 37 1 12.3554 4.7495 1.2836 38 1 11.3577 4.9235 -0.1801 39 1 11.4105 3.0556 4.4196 40 1 12.3588 3.9576 3.2131 41 1 13.8979 4.8826 6.4284 42 1 4.6361 1.0408 1.9132 43 1 3.4879 2.4463 1.8672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365047871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:58 Heat of formation + Delta-G solvation = -22.406362 kcal Electronic energy + Delta-G solvation = -28628.759046 eV Core-core repulsion = 24292.763215 eV Total energy + Delta-G solvation = -4335.995831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.90555 -40.72599 -40.07838 -38.56633 -37.17304 -35.79299 -34.78961 -33.35883 -31.51589 -30.90710 -29.85854 -28.37701 -26.83523 -26.52884 -26.27717 -24.58369 -22.93349 -21.51897 -20.60358 -19.75751 -19.60415 -18.86796 -17.89839 -17.65049 -17.21400 -16.67491 -16.43986 -16.14387 -15.68083 -15.35739 -15.00046 -14.78729 -14.49679 -14.25511 -14.08509 -13.94368 -13.55505 -13.51864 -13.22245 -12.94910 -12.64514 -12.45967 -12.27062 -12.17424 -12.13690 -11.66476 -11.44391 -11.37610 -11.17471 -11.10361 -10.82663 -10.75658 -10.45000 -10.24781 -10.03623 -9.68524 -9.53071 -9.11549 -8.63053 -7.90935 -7.40340 -6.24162 -4.31572 1.34418 1.70221 2.15833 2.63176 3.07305 3.11030 3.22481 3.28540 3.30000 3.35815 3.45427 3.80453 3.96167 4.10397 4.31230 4.36024 4.53720 4.63314 4.76250 4.82221 4.96222 5.00472 5.09513 5.20532 5.25768 5.46503 5.64869 5.72436 5.94723 6.14685 6.24377 6.47729 6.60920 6.67820 6.76861 6.91651 7.04462 7.06131 7.14677 7.51108 7.68675 7.86481 7.90787 8.08142 8.50949 8.67857 8.77027 9.34573 10.83034 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.002058 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.709289 B =13604.538664 C =14098.174403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.457 3.543 4 O -0.487 6.487 5 C 0.099 3.901 6 O -0.509 6.509 7 C 0.157 3.843 8 N -0.655 5.655 9 C 0.753 3.247 10 O -0.554 6.554 11 N -0.638 5.638 12 C 0.282 3.718 13 C -0.289 4.289 14 C 0.093 3.907 15 C -0.084 4.084 16 N -0.317 5.317 17 C 0.259 3.741 18 C -0.535 4.535 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.892 5.892 22 Si 0.906 3.094 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.272 1.272 26 N -0.322 5.322 27 C 0.088 3.912 28 H 0.105 0.895 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.394 0.606 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.406 0.594 35 H 0.160 0.840 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.055 0.945 41 H 0.268 0.732 42 H 0.098 0.902 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.072 -10.581 -11.757 27.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.273 6.273 3 C 0.297 3.703 4 O -0.373 6.373 5 C 0.055 3.945 6 O -0.315 6.315 7 C 0.033 3.967 8 N -0.396 5.396 9 C 0.456 3.544 10 O -0.428 6.428 11 N -0.287 5.287 12 C 0.029 3.971 13 C -0.320 4.320 14 C -0.039 4.039 15 C -0.142 4.142 16 N -0.100 5.100 17 C 0.141 3.859 18 C -0.573 4.573 19 H 0.082 0.918 20 C -0.138 4.138 21 N -0.530 5.530 22 Si 0.733 3.267 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.197 1.197 26 N -0.153 5.153 27 C -0.036 4.036 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.244 0.756 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.240 0.760 35 H 0.177 0.823 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.117 0.883 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -21.971 -9.798 -11.357 26.602 hybrid contribution -1.005 0.388 0.796 1.340 sum -22.975 -9.409 -10.560 26.980 Atomic orbital electron populations 1.23371 0.75249 1.04232 1.02966 1.86446 1.24334 1.32916 1.83606 1.23912 0.91419 0.82080 0.72892 1.90735 1.66241 1.36197 1.44166 1.22296 0.83328 0.90115 0.98788 1.86639 1.61628 1.14687 1.68571 1.22847 0.87709 0.91997 0.94107 1.48063 1.12036 1.60607 1.18906 1.14662 0.78442 0.78857 0.82481 1.90904 1.65114 1.45321 1.41447 1.41217 1.13043 1.58833 1.15609 1.18616 0.85114 0.99222 0.94150 1.21226 0.94166 1.13376 1.03276 1.21050 0.97312 0.98581 0.86953 1.20333 0.95090 0.99557 0.99212 1.48969 1.10988 1.39180 1.10846 1.19686 0.80117 0.99183 0.86917 1.21327 1.10190 1.06752 1.19061 0.91762 1.24928 0.94724 0.97462 0.96716 1.69920 1.12414 1.37029 1.33636 0.86355 0.77492 0.82518 0.80313 1.20378 1.20889 1.19670 1.77244 0.93856 1.24169 1.20035 1.23554 0.90798 0.95476 0.93807 0.87622 0.91489 0.91492 0.75557 0.86692 0.88004 0.75989 0.82251 0.90416 0.90856 0.90791 0.93020 0.92743 0.92282 0.88328 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.13 10.56 101.05 1.07 1.19 16 2 O -0.36 -2.03 9.88 -44.10 -0.44 -2.47 16 3 C 0.46 3.29 7.32 36.01 0.26 3.56 16 4 O -0.49 -4.65 15.86 -18.75 -0.30 -4.95 16 5 C 0.10 0.72 1.98 -91.39 -0.18 0.54 16 6 O -0.51 -3.69 13.49 -47.74 -0.64 -4.34 16 7 C 0.16 1.46 7.95 -8.51 -0.07 1.39 16 8 N -0.66 -7.59 3.69 -191.17 -0.71 -8.30 16 9 C 0.75 12.15 8.76 -86.92 -0.76 11.39 16 10 O -0.55 -10.80 14.25 5.28 0.08 -10.73 16 11 N -0.64 -10.56 5.46 -15.50 -0.08 -10.65 16 12 C 0.28 5.93 8.11 -154.36 -1.25 4.68 16 13 C -0.29 -6.17 9.52 -39.83 -0.38 -6.55 16 14 C 0.09 1.99 6.92 -82.28 -0.57 1.42 16 15 C -0.08 -1.46 10.11 36.01 0.36 -1.10 16 16 N -0.32 -7.64 3.59 -58.32 -0.21 -7.85 16 17 C 0.26 6.68 5.99 -5.19 -0.03 6.65 16 18 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 19 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 22 Si 0.91 21.24 29.54 -169.99 -5.02 16.21 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 26 N -0.32 -7.56 12.59 31.44 0.40 -7.17 16 27 C 0.09 0.65 7.69 -8.64 -0.07 0.58 16 28 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 29 H 0.07 0.24 8.13 -51.93 -0.42 -0.18 16 30 H 0.07 0.25 8.13 -51.93 -0.42 -0.17 16 31 H 0.39 1.28 8.50 45.56 0.39 1.67 16 32 H 0.12 0.96 7.42 -51.93 -0.39 0.58 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.41 5.47 8.54 -40.82 -0.35 5.12 16 35 H 0.16 3.35 5.91 -52.48 -0.31 3.04 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.28 7.07 -51.93 -0.37 0.91 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.05 1.39 7.04 -51.93 -0.37 1.02 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.10 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -36.14 376.52 -7.29 -43.42 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -4.74 Total: 5.24 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: -2.03 Total: 10.29 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.13 Total: -58.37 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -1.30 Total: -22.48 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.14 -7.29 -43.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365047871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.016 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds