Wall clock time and date at job start Tue Mar 31 2020 21:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99666 * 2 1 4 4 O 1.20829 * 120.00306 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99788 * 180.02562 * 3 2 1 6 6 O 1.42903 * 113.28404 * 21.93080 * 5 3 2 7 7 C 1.53500 * 114.20844 * 155.00025 * 5 3 2 8 8 N 1.47062 * 87.98721 * 139.65123 * 7 5 3 9 9 C 1.34777 * 136.05651 * 152.83902 * 8 7 5 10 10 O 1.21593 * 119.99953 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99726 * 180.27578 * 9 8 7 12 12 C 1.40196 * 119.99786 * 179.72659 * 11 9 8 13 13 C 1.40409 * 125.97477 * 0.02562 * 12 11 9 14 14 C 1.35236 * 107.86982 * 179.97438 * 13 12 11 15 15 C 1.50705 * 126.07145 * 179.97438 * 14 13 12 16 16 N 1.34965 * 107.85802 * 359.97438 * 14 13 12 17 17 C 1.46503 * 125.97610 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47031 * 89.99877 * 17 16 14 19 19 H 1.08002 * 119.99705 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00248 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99816 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00145 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46892 * 90.00526 * 22 20 18 24 24 H 1.48505 * 109.47119 * 210.00289 * 22 20 18 25 25 H 1.48497 * 109.47493 * 330.00462 * 22 20 18 26 26 N 1.31208 * 125.97545 * 179.69629 * 12 11 9 27 27 C 1.47067 * 87.88602 * 333.10138 * 8 7 5 28 28 H 1.09005 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47599 * 300.00204 * 1 2 3 30 30 H 1.09000 * 109.47629 * 60.00203 * 1 2 3 31 31 H 0.96700 * 113.99424 * 313.07065 * 6 5 3 32 32 H 1.09005 * 113.46346 * 24.86922 * 7 5 3 33 33 H 1.08998 * 113.51550 * 254.44517 * 7 5 3 34 34 H 0.97000 * 120.00483 * 359.73178 * 11 9 8 35 35 H 1.08003 * 126.06048 * 359.97438 * 13 12 11 36 36 H 1.08994 * 109.46979 * 90.02028 * 15 14 13 37 37 H 1.08997 * 109.46862 * 210.02362 * 15 14 13 38 38 H 1.08998 * 109.46784 * 330.01674 * 15 14 13 39 39 H 1.08995 * 109.47501 * 210.00017 * 17 16 14 40 40 H 1.09004 * 109.47182 * 330.00311 * 17 16 14 41 41 H 0.96996 * 119.99988 * 179.97438 * 21 20 18 42 42 H 1.09000 * 113.47213 * 141.67818 * 27 8 7 43 43 H 1.08998 * 113.46769 * 272.11820 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2749 -0.0006 6 8 4.1939 0.0886 -0.4913 7 6 4.1281 2.5751 -0.5922 8 7 5.1306 2.5705 0.4838 9 6 6.3810 3.0460 0.6472 10 8 6.9243 3.6511 -0.2568 11 7 7.0312 2.8464 1.8108 12 6 8.3341 3.3360 1.9786 13 6 9.0772 4.0480 1.0234 14 6 10.2802 4.3406 1.5674 15 6 11.3977 5.0961 0.8954 16 7 10.3023 3.8359 2.8189 17 6 11.4185 3.9260 3.7636 18 6 11.2777 5.1787 4.5894 19 1 10.4403 5.8412 4.4271 20 6 12.2173 5.4786 5.5529 21 7 13.2367 4.6715 5.7509 22 14 12.0423 7.0310 6.5770 23 1 11.2500 6.7324 7.7969 24 1 13.3888 7.5199 6.9687 25 1 11.3493 8.0746 5.7797 26 7 9.0701 3.2144 3.0580 27 6 4.1706 1.8130 1.3008 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 3.8376 -0.7286 -0.1167 32 1 3.4339 3.4135 -0.5352 33 1 4.5576 2.4506 -1.5862 34 1 6.5978 2.3639 2.5320 35 1 8.7465 4.3145 0.0304 36 1 11.2883 6.1617 1.0967 37 1 12.3554 4.7495 1.2836 38 1 11.3577 4.9235 -0.1801 39 1 11.4105 3.0556 4.4196 40 1 12.3588 3.9576 3.2131 41 1 13.8979 4.8826 6.4284 42 1 4.6361 1.0408 1.9132 43 1 3.4879 2.4463 1.8672 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365047871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:57 Heat of formation + Delta-G solvation = -49.214537 kcal Electronic energy + Delta-G solvation = -28629.921536 eV Core-core repulsion = 24292.763215 eV Total energy + Delta-G solvation = -4337.158321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.147 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.66929 -42.19584 -41.03840 -39.62183 -37.72762 -36.51529 -36.31111 -35.29873 -33.12325 -32.64801 -30.80998 -28.97581 -28.33591 -27.88085 -27.43731 -25.52259 -24.68510 -22.64372 -21.52640 -21.28552 -20.62131 -19.78472 -18.89274 -18.73751 -18.32964 -18.01563 -17.57049 -17.17835 -17.07280 -16.61395 -16.28377 -15.85467 -15.82977 -15.46133 -15.06501 -14.93868 -14.70081 -14.38001 -14.22317 -14.15644 -13.80993 -13.74029 -13.68958 -13.51459 -13.13190 -13.01368 -12.86302 -12.76104 -12.67067 -12.25189 -12.12777 -11.87532 -11.82102 -11.63106 -11.42887 -11.38879 -11.11493 -10.72777 -10.10018 -9.58188 -9.10329 -8.31851 -6.49263 0.72410 0.77909 1.00061 1.37606 1.38445 1.40729 1.51013 1.63138 1.88741 2.31184 2.34954 2.54578 2.76561 2.83656 2.97761 3.46952 3.69910 3.83341 4.03315 4.15784 4.26117 4.28434 4.31889 4.36308 4.43861 4.51213 4.58506 4.72870 4.76214 4.78279 4.90227 4.97463 5.00890 5.14942 5.17289 5.28042 5.54744 5.81347 5.83223 5.93114 6.26464 6.34510 6.56533 6.60325 6.63676 7.03420 7.21403 7.26616 8.74011 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.002058 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.709289 B =13604.538664 C =14098.174403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.467 3.533 4 O -0.512 6.512 5 C 0.116 3.884 6 O -0.521 6.521 7 C 0.147 3.853 8 N -0.656 5.656 9 C 0.750 3.250 10 O -0.594 6.594 11 N -0.630 5.630 12 C 0.292 3.708 13 C -0.299 4.299 14 C 0.090 3.910 15 C -0.082 4.082 16 N -0.341 5.341 17 C 0.275 3.725 18 C -0.552 4.552 19 H 0.049 0.951 20 C 0.023 3.977 21 N -0.917 5.917 22 Si 0.971 3.029 23 H -0.274 1.274 24 H -0.270 1.270 25 H -0.271 1.271 26 N -0.356 5.356 27 C 0.088 3.912 28 H 0.134 0.866 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.412 0.588 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.420 0.580 35 H 0.164 0.836 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.026 0.974 40 H 0.054 0.946 41 H 0.273 0.727 42 H 0.120 0.880 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.705 -10.811 -11.801 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.308 3.692 4 O -0.400 6.400 5 C 0.072 3.928 6 O -0.331 6.331 7 C 0.024 3.976 8 N -0.395 5.395 9 C 0.452 3.548 10 O -0.471 6.471 11 N -0.281 5.281 12 C 0.037 3.963 13 C -0.330 4.330 14 C -0.041 4.041 15 C -0.140 4.140 16 N -0.124 5.124 17 C 0.156 3.844 18 C -0.590 4.590 19 H 0.067 0.933 20 C -0.178 4.178 21 N -0.556 5.556 22 Si 0.795 3.205 23 H -0.200 1.200 24 H -0.195 1.195 25 H -0.195 1.195 26 N -0.187 5.187 27 C -0.034 4.034 28 H 0.152 0.848 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.265 0.735 32 H 0.143 0.857 33 H 0.113 0.887 34 H 0.257 0.743 35 H 0.182 0.818 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.138 0.862 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.680 -10.097 -11.401 28.155 hybrid contribution -0.673 0.333 0.708 1.032 sum -24.354 -9.764 -10.694 28.334 Atomic orbital electron populations 1.23651 0.73834 1.06122 1.02906 1.86439 1.25622 1.31803 1.83020 1.23697 0.91089 0.82154 0.72223 1.90736 1.66696 1.37082 1.45473 1.21894 0.83527 0.89388 0.98027 1.86618 1.61972 1.15485 1.69015 1.23076 0.87184 0.93850 0.93445 1.48018 1.11083 1.59572 1.20850 1.14771 0.79588 0.78729 0.81680 1.90859 1.66653 1.47114 1.42483 1.41168 1.11586 1.58776 1.16540 1.18880 0.86326 0.97855 0.93211 1.21385 0.94308 1.13805 1.03549 1.21718 0.98480 0.97828 0.86041 1.20472 0.93473 0.99239 1.00784 1.48780 1.11096 1.41011 1.11512 1.19269 0.80947 0.97436 0.86748 1.21433 1.10085 1.07323 1.20192 0.93278 1.25723 0.94179 1.00444 0.97496 1.69999 1.12919 1.38484 1.34151 0.85360 0.77972 0.78655 0.78526 1.19986 1.19523 1.19512 1.77164 0.94268 1.25777 1.21474 1.23855 0.89858 0.95718 0.94000 0.84819 0.91395 0.91772 0.73493 0.85709 0.88691 0.74301 0.81836 0.89788 0.91098 0.87630 0.95615 0.92868 0.91742 0.86177 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 10.56 113.37 1.20 1.33 16 2 O -0.35 -3.17 9.88 -46.77 -0.46 -3.63 16 3 C 0.47 5.79 7.32 71.24 0.52 6.31 16 4 O -0.51 -8.93 15.86 21.95 0.35 -8.58 16 5 C 0.12 1.46 1.98 -11.29 -0.02 1.44 16 6 O -0.52 -6.47 13.49 -137.02 -1.85 -8.31 16 7 C 0.15 2.58 7.95 83.18 0.66 3.24 16 8 N -0.66 -14.37 3.69 -877.48 -3.24 -17.61 16 9 C 0.75 23.80 8.76 179.05 1.57 25.37 16 10 O -0.59 -23.23 14.25 -4.01 -0.06 -23.29 16 11 N -0.63 -20.55 5.46 -321.22 -1.75 -22.30 16 12 C 0.29 12.36 8.11 133.32 1.08 13.44 16 13 C -0.30 -12.83 9.52 22.11 0.21 -12.62 16 14 C 0.09 3.90 6.92 41.39 0.29 4.18 16 15 C -0.08 -2.80 10.11 71.24 0.72 -2.08 16 16 N -0.34 -16.82 3.59 -338.44 -1.22 -18.04 16 17 C 0.27 14.65 5.99 85.63 0.51 15.16 16 18 C -0.55 -31.16 9.39 25.60 0.24 -30.92 16 19 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 20 C 0.02 1.24 5.46 84.65 0.46 1.70 16 21 N -0.92 -51.90 13.29 21.45 0.28 -51.61 16 22 Si 0.97 43.30 29.54 68.60 2.03 45.32 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 25 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 26 N -0.36 -17.04 12.59 -54.43 -0.69 -17.72 16 27 C 0.09 1.09 7.69 83.09 0.64 1.73 16 28 H 0.13 -0.10 8.14 -2.38 -0.02 -0.12 16 29 H 0.07 0.35 8.13 -2.39 -0.02 0.33 16 30 H 0.06 0.38 8.13 -2.39 -0.02 0.36 16 31 H 0.41 1.63 8.50 -74.06 -0.63 1.00 16 32 H 0.13 1.96 7.42 -2.38 -0.02 1.94 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.42 10.89 8.54 -92.71 -0.79 10.10 16 35 H 0.16 6.90 5.91 -2.91 -0.02 6.88 16 36 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 37 H 0.07 2.46 7.07 -2.39 -0.02 2.44 16 38 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 39 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 2.80 7.04 -2.39 -0.02 2.78 16 41 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 42 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.12 1.15 8.10 -2.39 -0.02 1.13 16 Total: -1.00 -78.68 376.52 1.14 -77.54 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -0.34 Total: 19.97 kcal Atomic # 6 Polarization: 20.20 SS G_CDS: 8.08 Total: 28.28 kcal Atomic # 7 Polarization: -120.68 SS G_CDS: -6.61 Total: -127.29 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -2.02 Total: -43.82 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -78.68 1.14 -77.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365047871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.323 kcal (2) G-P(sol) polarization free energy of solvation -78.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds